Wall clock time and date at job start Tue Mar 31 2020 06:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00276 * 2 1 4 4 H 1.48506 * 109.46920 * 269.99746 * 3 2 1 5 5 H 1.48494 * 109.47145 * 29.99565 * 3 2 1 6 6 H 1.48493 * 109.47253 * 150.00200 * 3 2 1 7 7 C 1.38817 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00221 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99653 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00037 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47473 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.47212 * 179.97438 * 11 10 9 13 13 C 1.34771 * 119.99622 * 179.97438 * 12 11 10 14 14 O 1.21280 * 120.00597 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99622 * 179.97438 * 13 12 11 16 16 C 1.52997 * 109.47212 * 180.02562 * 15 13 12 17 17 H 1.09005 * 110.13339 * 54.29743 * 16 15 13 18 18 O 1.43951 * 110.15395 * 292.60240 * 16 15 13 19 19 C 1.44112 * 104.85709 * 269.29562 * 18 16 15 20 20 C 1.51082 * 105.97560 * 331.54889 * 19 18 16 21 21 C 1.37964 * 132.68607 * 197.69751 * 20 19 18 22 22 C 1.38292 * 119.91656 * 180.02562 * 21 20 19 23 23 C 1.38263 * 120.04299 * 359.97438 * 22 21 20 24 24 C 1.38288 * 120.04264 * 0.02562 * 23 22 21 25 25 C 1.37978 * 119.91764 * 359.96604 * 24 23 22 26 26 H 0.97001 * 119.99359 * 0.02562 * 1 2 3 27 27 H 0.97004 * 120.00567 * 359.97438 * 9 7 2 28 28 H 1.09002 * 109.47129 * 59.99499 * 10 9 7 29 29 H 1.08998 * 109.46845 * 300.00306 * 10 9 7 30 30 H 1.09002 * 109.47153 * 59.99757 * 11 10 9 31 31 H 1.09001 * 109.46832 * 299.99948 * 11 10 9 32 32 H 0.96996 * 119.99606 * 0.02562 * 12 11 10 33 33 H 1.09001 * 109.47380 * 300.00190 * 15 13 12 34 34 H 1.09002 * 109.47060 * 60.00278 * 15 13 12 35 35 H 1.09005 * 110.13458 * 212.42411 * 19 18 16 36 36 H 1.09004 * 110.21283 * 90.72014 * 19 18 16 37 37 H 1.08003 * 120.04128 * 0.02997 * 21 20 19 38 38 H 1.08007 * 119.97811 * 179.97438 * 22 21 20 39 39 H 1.08000 * 119.97634 * 179.97438 * 23 22 21 40 40 H 1.08001 * 120.04319 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0637 -4.8197 0.0012 12 7 1.7962 -6.0885 0.0006 13 6 1.1222 -7.2556 0.0015 14 8 -0.0906 -7.2556 0.0024 15 6 1.8757 -8.5607 0.0003 16 6 0.8814 -9.7236 0.0010 17 1 0.1827 -9.6205 -0.8292 18 8 0.1658 -9.7635 1.2494 19 6 0.9513 -10.6231 2.0984 20 6 1.6607 -11.5848 1.1741 21 6 2.2806 -12.7993 1.3845 22 6 2.8600 -13.4709 0.3235 23 6 2.8177 -12.9263 -0.9467 24 6 2.1964 -11.7089 -1.1576 25 6 1.6181 -11.0389 -0.0991 26 1 -0.4849 0.8401 -0.0004 27 1 0.3555 -2.3881 0.0005 28 1 2.6846 -3.7146 0.8905 29 1 2.6846 -3.7146 -0.8894 30 1 0.4366 -4.7622 -0.8886 31 1 0.4374 -4.7618 0.8914 32 1 2.7661 -6.0885 0.0002 33 1 2.5010 -8.6185 -0.8906 34 1 2.5036 -8.6186 0.8894 35 1 0.3021 -11.1696 2.7826 36 1 1.6782 -10.0360 2.6596 37 1 2.3132 -13.2249 2.3765 38 1 3.3459 -14.4215 0.4872 39 1 3.2709 -13.4515 -1.7744 40 1 2.1630 -11.2837 -2.1498 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149351393.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:56 Heat of formation + Delta-G solvation = -61.301809 kcal Electronic energy + Delta-G solvation = -21771.933183 eV Core-core repulsion = 18358.004544 eV Total energy + Delta-G solvation = -3413.928639 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.96872 -40.48962 -38.30972 -37.29103 -35.47315 -33.59280 -33.04411 -32.26225 -31.22720 -29.38035 -27.47457 -25.72442 -24.78675 -23.11869 -22.49211 -22.19464 -21.21500 -19.33541 -18.32294 -17.76666 -17.43358 -17.13014 -16.65328 -16.61669 -16.45016 -16.07631 -15.42955 -15.25645 -15.08923 -14.87963 -14.68603 -14.46728 -13.99372 -13.84704 -13.49254 -13.13973 -13.04889 -12.87180 -12.80295 -12.62705 -12.51900 -12.20121 -12.08773 -11.87015 -11.76796 -11.05747 -10.99818 -10.96096 -10.13318 -9.83793 -9.55214 -9.07795 -7.97488 -5.29280 0.26138 0.39718 1.47921 1.50689 1.59150 1.64727 2.08381 2.57222 2.74123 2.94725 3.20794 3.36548 3.56432 3.68834 3.95549 4.00757 4.05965 4.14692 4.20574 4.22244 4.27369 4.40164 4.44789 4.55279 4.57426 4.61287 4.69194 4.84062 4.93166 5.03509 5.10117 5.12586 5.39212 5.42051 5.45366 5.48620 5.55269 5.80253 6.00916 6.23116 6.55787 7.27136 7.29107 8.00946 8.24022 9.26248 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.043416 B = 0.002287 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.761688 B =12241.654674 C =12450.800297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.981 3.019 4 H -0.285 1.285 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.248 4.248 8 H 0.084 0.916 9 N -0.748 5.748 10 C 0.150 3.850 11 C 0.128 3.872 12 N -0.713 5.713 13 C 0.509 3.491 14 O -0.579 6.579 15 C -0.141 4.141 16 C 0.135 3.865 17 H 0.092 0.908 18 O -0.371 6.371 19 C 0.076 3.924 20 C -0.140 4.140 21 C -0.102 4.102 22 C -0.115 4.115 23 C -0.118 4.118 24 C -0.097 4.097 25 C -0.139 4.139 26 H 0.252 0.748 27 H 0.373 0.627 28 H 0.037 0.963 29 H 0.039 0.961 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.417 0.583 33 H 0.137 0.863 34 H 0.116 0.884 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.144 0.856 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.016 -31.243 0.287 33.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.810 3.190 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.190 1.190 7 C -0.380 4.380 8 H 0.102 0.898 9 N -0.392 5.392 10 C 0.023 3.977 11 C 0.003 3.997 12 N -0.366 5.366 13 C 0.297 3.703 14 O -0.458 6.458 15 C -0.180 4.180 16 C 0.076 3.924 17 H 0.110 0.890 18 O -0.290 6.290 19 C 0.000 4.000 20 C -0.140 4.140 21 C -0.119 4.119 22 C -0.132 4.132 23 C -0.136 4.136 24 C -0.115 4.115 25 C -0.139 4.139 26 H 0.061 0.939 27 H 0.205 0.795 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.255 0.745 33 H 0.155 0.845 34 H 0.134 0.866 35 H 0.124 0.876 36 H 0.104 0.896 37 H 0.162 0.838 38 H 0.171 0.829 39 H 0.170 0.830 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 10.119 -31.019 0.358 32.630 hybrid contribution 0.042 1.238 0.024 1.239 sum 10.162 -29.781 0.382 31.469 Atomic orbital electron populations 1.69848 1.06885 1.26306 1.59134 1.25717 0.96478 1.01599 1.03362 0.85027 0.77681 0.78818 0.77517 1.21207 1.22327 1.18964 1.19661 0.91751 0.84826 1.41730 0.89813 1.42455 1.05765 1.01179 1.89781 1.20847 0.93551 0.84027 0.99272 1.21115 0.94821 0.82948 1.00827 1.45750 1.11155 1.04601 1.75119 1.21124 0.87906 0.86259 0.75007 1.90731 1.16217 1.88156 1.50720 1.22101 0.98901 0.89436 1.07609 1.21004 0.92506 0.90620 0.88251 0.88978 1.89316 1.46965 1.68340 1.24384 1.22016 0.94898 0.90297 0.92803 1.21182 1.00602 0.96814 0.95401 1.20717 0.97466 0.92809 1.00951 1.21547 0.98598 1.00745 0.92330 1.21512 0.98670 0.95069 0.98363 1.20727 0.97197 0.95257 0.98355 1.20913 1.01293 0.96218 0.95523 0.93900 0.79527 0.94514 0.94285 0.93011 0.93342 0.74548 0.84501 0.86601 0.87625 0.89638 0.83837 0.82868 0.82952 0.84185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.71 13.06 21.65 0.28 -60.42 16 2 C -0.08 -4.60 5.50 84.86 0.47 -4.14 16 3 Si 0.98 46.07 29.55 68.60 2.03 48.10 16 4 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.25 -13.87 9.99 84.03 0.84 -13.03 16 8 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 9 N -0.75 -38.79 5.60 -343.46 -1.92 -40.72 16 10 C 0.15 5.81 6.37 86.38 0.55 6.36 16 11 C 0.13 4.54 5.79 86.38 0.50 5.04 16 12 N -0.71 -18.96 5.56 -463.06 -2.57 -21.53 16 13 C 0.51 14.53 7.74 87.66 0.68 15.20 16 14 O -0.58 -22.69 15.54 7.13 0.11 -22.58 16 15 C -0.14 -2.62 5.37 29.85 0.16 -2.46 16 16 C 0.13 3.01 2.92 29.97 0.09 3.10 16 17 H 0.09 2.34 7.95 -2.38 -0.02 2.32 16 18 O -0.37 -10.19 10.85 -138.82 -1.51 -11.70 16 19 C 0.08 1.42 7.39 71.36 0.53 1.95 16 20 C -0.14 -2.35 6.32 -19.72 -0.12 -2.47 16 21 C -0.10 -1.24 10.04 22.22 0.22 -1.02 16 22 C -0.11 -1.11 10.05 22.29 0.22 -0.89 16 23 C -0.12 -1.20 10.05 22.29 0.22 -0.98 16 24 C -0.10 -1.30 10.04 22.22 0.22 -1.08 16 25 C -0.14 -2.46 5.63 -19.72 -0.11 -2.57 16 26 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 27 H 0.37 20.99 7.67 -92.71 -0.71 20.28 16 28 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.42 7.88 8.47 -92.71 -0.79 7.10 16 33 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.12 1.75 7.97 -2.39 -0.02 1.73 16 35 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.14 1.12 8.06 -2.91 -0.02 1.09 16 38 H 0.15 0.64 8.06 -2.91 -0.02 0.62 16 39 H 0.15 0.74 8.06 -2.91 -0.02 0.72 16 40 H 0.14 1.39 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -77.61 342.11 0.45 -77.16 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: -0.44 Total: 28.67 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 4.47 Total: 3.02 kcal Atomic # 7 Polarization: -118.45 SS G_CDS: -4.21 Total: -122.67 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -1.40 Total: -34.28 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -77.61 0.45 -77.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149351393.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.856 kcal (2) G-P(sol) polarization free energy of solvation -77.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds