Wall clock time and date at job start Tue Mar 31 2020 06:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00157 * 2 1 4 4 H 1.48494 * 109.47177 * 270.00126 * 3 2 1 5 5 H 1.48498 * 109.47028 * 30.00049 * 3 2 1 6 6 H 1.48505 * 109.47036 * 149.99842 * 3 2 1 7 7 C 1.38813 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00062 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00059 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00253 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47299 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.46840 * 180.02562 * 12 11 10 14 14 C 1.34779 * 119.99872 * 180.02562 * 13 12 11 15 15 O 1.21278 * 120.00071 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99944 * 180.02562 * 14 13 12 17 17 H 1.09002 * 110.66712 * 58.21510 * 16 14 13 18 18 C 1.54711 * 110.74814 * 295.00195 * 16 14 13 19 19 C 1.51642 * 101.92553 * 266.95919 * 18 16 14 20 20 C 1.37744 * 132.17938 * 164.59945 * 19 18 16 21 21 C 1.38352 * 119.97972 * 180.35702 * 20 19 18 22 22 C 1.38284 * 119.76969 * 0.03276 * 21 20 19 23 23 C 1.37936 * 120.35013 * 359.78836 * 22 21 20 24 24 C 1.38887 * 107.04297 * 344.62296 * 19 18 16 25 25 O 1.36143 * 111.23157 * 358.91895 * 24 19 18 26 26 H 0.97005 * 120.00080 * 0.02562 * 1 2 3 27 27 H 0.97003 * 119.99763 * 359.97438 * 9 7 2 28 28 H 1.09001 * 109.46596 * 59.99748 * 10 9 7 29 29 H 1.09002 * 109.47129 * 300.00103 * 10 9 7 30 30 H 1.09001 * 109.46652 * 60.00269 * 11 10 9 31 31 H 1.08992 * 109.47514 * 300.00358 * 11 10 9 32 32 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 33 33 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 34 34 H 0.97000 * 120.00420 * 0.02562 * 13 12 11 35 35 H 1.08997 * 110.94062 * 25.11460 * 18 16 14 36 36 H 1.08999 * 110.93518 * 148.80023 * 18 16 14 37 37 H 1.07999 * 120.01021 * 0.35883 * 20 19 18 38 38 H 1.07999 * 120.11912 * 180.02562 * 21 20 19 39 39 H 1.07995 * 119.83079 * 179.81491 * 22 21 20 40 40 H 1.07998 * 119.88134 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.6163 -2.1913 0.0000 12 6 6.3813 -3.5164 0.0006 13 7 7.8216 -3.2487 0.0013 14 6 8.6974 -4.2732 0.0014 15 8 8.2931 -5.4166 0.0014 16 6 10.1790 -3.9978 0.0026 17 1 10.4585 -3.3998 0.8700 18 6 10.6071 -3.2958 -1.3079 19 6 11.0141 -4.4716 -2.1748 20 6 11.2311 -4.5904 -3.5298 21 6 11.5958 -5.8120 -4.0671 22 6 11.7404 -6.9104 -3.2395 23 6 11.5273 -6.7929 -1.8818 24 6 11.1636 -5.5658 -1.3325 25 8 10.9254 -5.2260 -0.0358 26 1 -0.4850 0.8401 -0.0004 27 1 3.8645 -0.3621 0.0004 28 1 3.8490 -3.0422 -0.8902 29 1 3.8484 -3.0427 0.8897 30 1 5.8796 -1.6198 0.8900 31 1 5.8797 -1.6198 -0.8899 32 1 6.1178 -4.0877 0.8908 33 1 6.1181 -4.0883 -0.8892 34 1 8.1450 -2.3342 0.0016 35 1 9.7708 -2.7558 -1.7518 36 1 11.4516 -2.6288 -1.1346 37 1 11.1165 -3.7301 -4.1726 38 1 11.7668 -5.9076 -5.1292 39 1 12.0222 -7.8652 -3.6583 40 1 11.6420 -7.6558 -1.2425 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162059176.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:48 Heat of formation + Delta-G solvation = -28.096063 kcal Electronic energy + Delta-G solvation = -21883.735724 eV Core-core repulsion = 18471.246994 eV Total energy + Delta-G solvation = -3412.488730 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.82134 -39.43253 -37.61030 -36.19606 -34.61394 -33.23014 -32.03764 -30.52590 -30.37259 -29.42453 -25.92122 -24.40897 -22.80048 -22.24084 -21.94705 -21.39688 -20.61864 -18.31914 -17.51532 -17.28248 -17.24529 -16.21486 -15.90953 -15.56927 -15.25268 -14.55404 -14.43922 -14.34610 -13.92811 -13.65071 -13.52657 -13.47841 -13.02443 -12.84912 -12.63814 -12.16952 -12.07078 -11.99475 -11.96051 -11.25318 -11.15808 -11.08680 -10.88969 -10.75965 -10.20680 -10.01049 -9.62628 -9.26982 -9.20881 -8.93864 -8.46339 -7.28194 -5.79799 -3.16254 0.94454 1.05595 2.26957 2.59999 3.05175 3.33201 3.35398 3.41708 3.42121 3.95154 4.03284 4.32652 4.49155 4.55379 4.70634 4.77170 4.84210 4.88903 5.06223 5.10490 5.13503 5.25180 5.29064 5.42895 5.50366 5.67001 5.72492 5.85884 5.89196 5.98313 6.05288 6.07055 6.15018 6.21283 6.26047 6.63675 6.66630 6.81384 7.22053 7.93541 7.96147 8.38842 9.17370 9.89320 10.08612 11.38535 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029577 B = 0.002528 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.441737 B =11075.211196 C =11206.029823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.887 3.113 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.757 5.757 10 C 0.160 3.840 11 C -0.141 4.141 12 C 0.122 3.878 13 N -0.723 5.723 14 C 0.494 3.506 15 O -0.518 6.518 16 C 0.063 3.937 17 H 0.144 0.856 18 C -0.099 4.099 19 C -0.177 4.177 20 C -0.068 4.068 21 C -0.149 4.149 22 C -0.085 4.085 23 C -0.132 4.132 24 C 0.111 3.889 25 O -0.274 6.274 26 H 0.260 0.740 27 H 0.361 0.639 28 H 0.031 0.969 29 H 0.030 0.970 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.401 0.599 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.132 0.868 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.038 -7.944 -4.922 30.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.193 4.193 3 Si 0.717 3.283 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.109 0.891 9 N -0.402 5.402 10 C 0.032 3.968 11 C -0.180 4.180 12 C -0.001 4.001 13 N -0.376 5.376 14 C 0.278 3.722 15 O -0.393 6.393 16 C 0.003 3.997 17 H 0.161 0.839 18 C -0.137 4.137 19 C -0.178 4.178 20 C -0.086 4.086 21 C -0.167 4.167 22 C -0.103 4.103 23 C -0.151 4.151 24 C 0.066 3.934 25 O -0.186 6.186 26 H 0.070 0.930 27 H 0.193 0.807 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.235 0.765 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.150 0.850 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 28.545 -9.001 -4.698 30.297 hybrid contribution 0.522 1.842 0.013 1.915 sum 29.067 -7.158 -4.685 30.300 Atomic orbital electron populations 1.69703 1.05111 1.25871 1.57430 1.24698 0.95279 0.97280 1.01994 0.86509 0.79135 0.84890 0.77727 1.21066 1.21682 1.20400 1.19070 0.80549 0.94845 1.43159 0.89143 1.42680 1.04130 1.02112 1.91325 1.20496 0.87562 0.89559 0.99139 1.21995 0.97236 0.96081 1.02638 1.21385 0.77721 0.98069 1.02917 1.45998 1.07216 1.09090 1.75337 1.20814 0.88332 0.85869 0.77162 1.90761 1.79595 1.21140 1.47789 1.23338 0.89621 0.85169 1.01547 0.83902 1.21785 1.03145 0.96664 0.92072 1.20705 1.07502 0.94589 0.94978 1.20308 0.97612 0.98097 0.92631 1.21055 1.02889 0.92700 1.00061 1.20907 0.98112 0.99075 0.92192 1.20300 1.04978 0.94632 0.95196 1.19575 0.96236 0.94233 0.83377 1.86939 1.68008 1.40837 1.22820 0.93004 0.80694 0.95152 0.95175 0.91246 0.91278 0.90968 0.91050 0.76494 0.88362 0.87758 0.85636 0.85360 0.85047 0.85294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.35 13.97 55.49 0.78 -28.58 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 3 Si 0.89 21.78 27.74 -169.99 -4.71 17.07 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 7 C -0.25 -7.00 10.47 -15.06 -0.16 -7.16 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 9 N -0.76 -17.76 5.41 -59.91 -0.32 -18.09 16 10 C 0.16 2.98 6.26 -4.04 -0.03 2.96 16 11 C -0.14 -1.90 5.44 -26.73 -0.15 -2.05 16 12 C 0.12 1.52 5.67 -4.04 -0.02 1.50 16 13 N -0.72 -7.30 5.39 -60.29 -0.33 -7.63 16 14 C 0.49 6.00 7.07 -10.98 -0.08 5.93 16 15 O -0.52 -8.81 16.53 -13.50 -0.22 -9.04 16 16 C 0.06 0.57 4.11 -26.98 -0.11 0.46 16 17 H 0.14 0.79 8.14 -51.93 -0.42 0.37 16 18 C -0.10 -0.71 6.64 -26.52 -0.18 -0.89 16 19 C -0.18 -1.75 6.26 -104.10 -0.65 -2.40 16 20 C -0.07 -0.59 10.03 -39.72 -0.40 -0.99 16 21 C -0.15 -1.19 10.07 -39.52 -0.40 -1.59 16 22 C -0.08 -0.71 10.02 -39.67 -0.40 -1.11 16 23 C -0.13 -1.37 10.06 -39.30 -0.40 -1.76 16 24 C 0.11 1.29 6.90 -38.95 -0.27 1.02 16 25 O -0.27 -3.34 10.41 -39.26 -0.41 -3.75 16 26 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 27 H 0.36 8.10 5.53 -40.82 -0.23 7.87 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.40 2.74 8.47 -40.82 -0.35 2.39 16 35 H 0.10 0.61 7.78 -51.93 -0.40 0.21 16 36 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 40 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 340.21 15.07 5.13 5.13 Total: -1.00 -36.46 340.21 -9.06 -45.52 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.64 Total: 5.43 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -3.32 Total: -6.07 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.13 Total: -54.29 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -0.63 Total: -12.78 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.71 Total: 17.07 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -36.46 -9.06 -45.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162059176.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.423 kcal (2) G-P(sol) polarization free energy of solvation -36.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds