Wall clock time and date at job start Tue Mar 31 2020 06:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00157 * 2 1 4 4 H 1.48494 * 109.47177 * 270.00126 * 3 2 1 5 5 H 1.48498 * 109.47028 * 30.00049 * 3 2 1 6 6 H 1.48505 * 109.47036 * 149.99842 * 3 2 1 7 7 C 1.38813 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00062 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00059 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00253 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47299 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.46840 * 180.02562 * 12 11 10 14 14 C 1.34779 * 119.99872 * 180.02562 * 13 12 11 15 15 O 1.21278 * 120.00071 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99944 * 180.02562 * 14 13 12 17 17 H 1.09002 * 110.66712 * 58.21510 * 16 14 13 18 18 C 1.54711 * 110.74814 * 295.00195 * 16 14 13 19 19 C 1.51642 * 101.92553 * 266.95919 * 18 16 14 20 20 C 1.37744 * 132.17938 * 164.59945 * 19 18 16 21 21 C 1.38352 * 119.97972 * 180.35702 * 20 19 18 22 22 C 1.38284 * 119.76969 * 0.03276 * 21 20 19 23 23 C 1.37936 * 120.35013 * 359.78836 * 22 21 20 24 24 C 1.38887 * 107.04297 * 344.62296 * 19 18 16 25 25 O 1.36143 * 111.23157 * 358.91895 * 24 19 18 26 26 H 0.97005 * 120.00080 * 0.02562 * 1 2 3 27 27 H 0.97003 * 119.99763 * 359.97438 * 9 7 2 28 28 H 1.09001 * 109.46596 * 59.99748 * 10 9 7 29 29 H 1.09002 * 109.47129 * 300.00103 * 10 9 7 30 30 H 1.09001 * 109.46652 * 60.00269 * 11 10 9 31 31 H 1.08992 * 109.47514 * 300.00358 * 11 10 9 32 32 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 33 33 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 34 34 H 0.97000 * 120.00420 * 0.02562 * 13 12 11 35 35 H 1.08997 * 110.94062 * 25.11460 * 18 16 14 36 36 H 1.08999 * 110.93518 * 148.80023 * 18 16 14 37 37 H 1.07999 * 120.01021 * 0.35883 * 20 19 18 38 38 H 1.07999 * 120.11912 * 180.02562 * 21 20 19 39 39 H 1.07995 * 119.83079 * 179.81491 * 22 21 20 40 40 H 1.07998 * 119.88134 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.6163 -2.1913 0.0000 12 6 6.3813 -3.5164 0.0006 13 7 7.8216 -3.2487 0.0013 14 6 8.6974 -4.2732 0.0014 15 8 8.2931 -5.4166 0.0014 16 6 10.1790 -3.9978 0.0026 17 1 10.4585 -3.3998 0.8700 18 6 10.6071 -3.2958 -1.3079 19 6 11.0141 -4.4716 -2.1748 20 6 11.2311 -4.5904 -3.5298 21 6 11.5958 -5.8120 -4.0671 22 6 11.7404 -6.9104 -3.2395 23 6 11.5273 -6.7929 -1.8818 24 6 11.1636 -5.5658 -1.3325 25 8 10.9254 -5.2260 -0.0358 26 1 -0.4850 0.8401 -0.0004 27 1 3.8645 -0.3621 0.0004 28 1 3.8490 -3.0422 -0.8902 29 1 3.8484 -3.0427 0.8897 30 1 5.8796 -1.6198 0.8900 31 1 5.8797 -1.6198 -0.8899 32 1 6.1178 -4.0877 0.8908 33 1 6.1181 -4.0883 -0.8892 34 1 8.1450 -2.3342 0.0016 35 1 9.7708 -2.7558 -1.7518 36 1 11.4516 -2.6288 -1.1346 37 1 11.1165 -3.7301 -4.1726 38 1 11.7668 -5.9076 -5.1292 39 1 12.0222 -7.8652 -3.6583 40 1 11.6420 -7.6558 -1.2425 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162059176.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:47 Heat of formation + Delta-G solvation = -53.853655 kcal Electronic energy + Delta-G solvation = -21884.852657 eV Core-core repulsion = 18471.246994 eV Total energy + Delta-G solvation = -3413.605663 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.54155 -40.34581 -38.32014 -37.59515 -36.04708 -34.18043 -33.59750 -31.92906 -31.02578 -30.36328 -27.26278 -25.43011 -23.95683 -23.35823 -22.75566 -22.58061 -21.61171 -19.74813 -18.93690 -18.02118 -18.01163 -17.08051 -16.88075 -16.54188 -16.47053 -16.02659 -15.54110 -15.47261 -15.02734 -14.81921 -14.52932 -14.27229 -14.16791 -13.95066 -13.79897 -13.60271 -12.89649 -12.78852 -12.72854 -12.58862 -12.55372 -12.52344 -12.10210 -12.01450 -11.81187 -11.78123 -10.98446 -10.97474 -10.22906 -9.86383 -9.32832 -9.16215 -8.03581 -5.39056 0.29854 0.37439 1.38525 1.38624 1.44527 1.51911 1.81343 2.29666 2.49326 2.76772 3.27489 3.34618 3.42927 3.52794 3.59619 3.89598 4.05161 4.15386 4.21396 4.22238 4.23675 4.30360 4.49563 4.60719 4.67068 4.68050 4.69494 4.75359 4.86046 5.06614 5.20624 5.27058 5.32552 5.34263 5.40645 5.52500 5.60737 5.73948 6.14153 6.19759 6.42594 7.06802 7.09561 7.80777 8.02397 9.17955 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029577 B = 0.002528 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.441737 B =11075.211196 C =11206.029823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.069 4.069 3 Si 0.965 3.035 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.243 1.243 7 C -0.243 4.243 8 H 0.051 0.949 9 N -0.757 5.757 10 C 0.153 3.847 11 C -0.120 4.120 12 C 0.131 3.869 13 N -0.704 5.704 14 C 0.491 3.509 15 O -0.577 6.577 16 C 0.063 3.937 17 H 0.182 0.818 18 C -0.090 4.090 19 C -0.189 4.189 20 C -0.078 4.078 21 C -0.151 4.151 22 C -0.090 4.090 23 C -0.157 4.157 24 C 0.074 3.926 25 O -0.300 6.300 26 H 0.259 0.741 27 H 0.370 0.630 28 H 0.023 0.977 29 H 0.022 0.978 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.421 0.579 35 H 0.112 0.888 36 H 0.136 0.864 37 H 0.150 0.850 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.048 -5.607 -5.724 33.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.260 4.260 3 Si 0.791 3.209 4 H -0.201 1.201 5 H -0.224 1.224 6 H -0.167 1.167 7 C -0.374 4.374 8 H 0.069 0.931 9 N -0.404 5.404 10 C 0.026 3.974 11 C -0.159 4.159 12 C 0.006 3.994 13 N -0.359 5.359 14 C 0.277 3.723 15 O -0.456 6.456 16 C 0.004 3.996 17 H 0.199 0.801 18 C -0.127 4.127 19 C -0.190 4.190 20 C -0.096 4.096 21 C -0.168 4.168 22 C -0.108 4.108 23 C -0.176 4.176 24 C 0.029 3.971 25 O -0.213 6.213 26 H 0.068 0.932 27 H 0.204 0.796 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.259 0.741 35 H 0.130 0.870 36 H 0.154 0.846 37 H 0.167 0.833 38 H 0.172 0.828 39 H 0.172 0.828 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 31.622 -6.651 -5.502 32.779 hybrid contribution -0.460 0.964 0.227 1.092 sum 31.162 -5.687 -5.275 32.113 Atomic orbital electron populations 1.69910 1.07432 1.26928 1.59332 1.25667 0.96273 1.01870 1.02213 0.85270 0.78782 0.78581 0.78284 1.20111 1.22386 1.16744 1.19036 0.82894 0.93477 1.42021 0.93111 1.42628 1.02416 1.04203 1.91117 1.20656 0.90820 0.87570 0.98339 1.21754 0.93107 0.96673 1.04318 1.21106 0.79150 0.97283 1.01854 1.45764 1.05916 1.09986 1.74219 1.21514 0.89927 0.85124 0.75714 1.90737 1.80725 1.23544 1.50551 1.23644 0.86856 0.84811 1.04334 0.80113 1.21892 1.04665 0.95948 0.90183 1.21119 1.07193 0.95130 0.95558 1.20701 0.97106 0.99195 0.92563 1.21473 1.01644 0.92360 1.01364 1.21241 0.97599 1.00509 0.91475 1.20593 1.05934 0.94709 0.96358 1.19954 0.97970 0.95436 0.83728 1.86895 1.68473 1.42372 1.23545 0.93240 0.79637 0.95874 0.95944 0.89587 0.89467 0.92181 0.92338 0.74071 0.87005 0.84631 0.83258 0.82752 0.82767 0.85568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.44 13.97 21.65 0.30 -63.14 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 3 Si 0.96 44.00 27.74 68.60 1.90 45.90 16 4 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.24 -9.62 6.52 99.48 0.65 -8.97 16 7 C -0.24 -13.98 10.47 84.03 0.88 -13.10 16 8 H 0.05 3.24 8.06 -2.91 -0.02 3.21 16 9 N -0.76 -34.40 5.41 -343.45 -1.86 -36.26 16 10 C 0.15 5.53 6.26 86.38 0.54 6.08 16 11 C -0.12 -2.88 5.44 30.59 0.17 -2.72 16 12 C 0.13 3.04 5.67 86.38 0.49 3.53 16 13 N -0.70 -12.41 5.39 -463.05 -2.50 -14.91 16 14 C 0.49 11.31 7.07 87.66 0.62 11.93 16 15 O -0.58 -19.98 16.53 15.20 0.25 -19.73 16 16 C 0.06 1.01 4.11 30.43 0.13 1.13 16 17 H 0.18 1.36 8.14 -2.39 -0.02 1.35 16 18 C -0.09 -1.00 6.64 30.73 0.20 -0.80 16 19 C -0.19 -3.41 6.26 -19.53 -0.12 -3.53 16 20 C -0.08 -1.16 10.03 22.18 0.22 -0.94 16 21 C -0.15 -2.11 10.07 22.31 0.22 -1.89 16 22 C -0.09 -1.44 10.02 22.21 0.22 -1.22 16 23 C -0.16 -3.34 10.06 22.45 0.23 -3.12 16 24 C 0.07 1.72 6.90 22.68 0.16 1.87 16 25 O -0.30 -7.26 10.41 -76.95 -0.80 -8.06 16 26 H 0.26 15.77 8.31 -92.70 -0.77 15.00 16 27 H 0.37 15.34 5.53 -92.71 -0.51 14.83 16 28 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.42 3.98 8.47 -92.71 -0.79 3.19 16 35 H 0.11 0.93 7.78 -2.39 -0.02 0.92 16 36 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 38 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 39 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 40 H 0.13 2.52 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -83.26 340.21 1.43 -81.83 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -0.30 Total: 20.72 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 4.42 Total: -6.36 kcal Atomic # 7 Polarization: -110.26 SS G_CDS: -4.05 Total: -114.31 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.55 Total: -27.79 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.90 Total: 45.90 kcal Total: -83.26 1.43 -81.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162059176.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.979 kcal (2) G-P(sol) polarization free energy of solvation -83.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds