Wall clock time and date at job start Tue Mar 31 2020 05:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46951 * 2 1 4 4 C 1.53007 * 109.46951 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47225 * 179.97438 * 4 3 2 6 6 C 1.36799 * 120.00146 * 269.99936 * 5 4 3 7 7 H 1.07994 * 119.99849 * 6.06092 * 6 5 4 8 8 C 1.38935 * 120.00015 * 186.05492 * 6 5 4 9 9 N 1.31465 * 119.99811 * 6.59947 * 8 6 5 10 10 Si 1.86802 * 120.00236 * 186.59539 * 8 6 5 11 11 H 1.48498 * 109.46775 * 90.00056 * 10 8 6 12 12 H 1.48491 * 109.47244 * 210.00184 * 10 8 6 13 13 H 1.48501 * 109.46911 * 330.00520 * 10 8 6 14 14 C 1.37811 * 119.99683 * 90.00389 * 5 4 3 15 15 N 1.32776 * 121.00961 * 263.60241 * 14 5 4 16 16 C 1.32299 * 121.49437 * 179.97438 * 15 14 5 17 17 N 1.31284 * 123.12277 * 359.97438 * 16 15 14 18 18 C 1.33903 * 120.35817 * 359.97438 * 17 16 15 19 19 C 1.40199 * 122.78641 * 180.02562 * 18 17 16 20 20 N 1.31393 * 119.85777 * 179.97438 * 19 18 17 21 21 C 1.32556 * 122.78427 * 0.02562 * 20 19 18 22 22 F 1.35103 * 119.14202 * 179.97438 * 21 20 19 23 23 C 1.36870 * 121.71004 * 359.97438 * 21 20 19 24 24 C 1.39878 * 118.53174 * 0.02562 * 23 21 20 25 25 H 1.08993 * 109.47084 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46655 * 299.99558 * 1 2 3 27 27 H 1.08999 * 109.46845 * 59.99511 * 1 2 3 28 28 H 1.08996 * 109.46785 * 240.00129 * 2 1 3 29 29 H 1.08999 * 109.46845 * 120.00488 * 2 1 3 30 30 H 1.09004 * 109.47080 * 60.00702 * 3 2 1 31 31 H 1.08999 * 109.47745 * 299.99937 * 3 2 1 32 32 H 1.08996 * 109.46785 * 60.00129 * 4 3 2 33 33 H 1.08999 * 109.46845 * 300.00488 * 4 3 2 34 34 H 0.97005 * 119.99564 * 175.00254 * 9 8 6 35 35 H 1.08002 * 118.43939 * 180.25068 * 16 15 14 36 36 H 1.08001 * 120.06961 * 359.97438 * 19 18 17 37 37 H 1.08001 * 120.72829 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2870 3.4679 -1.1850 7 1 4.0158 2.9954 -2.1174 8 6 4.8678 4.7300 -1.1888 9 7 5.3162 5.2506 -0.0680 10 14 5.0119 5.6871 -2.7865 11 1 3.7962 6.5184 -2.9767 12 1 6.2083 6.5649 -2.7315 13 1 5.1455 4.7386 -3.9213 14 6 4.2877 3.4739 1.1933 15 7 3.3719 4.2772 1.7215 16 6 3.5816 4.9058 2.8666 17 7 4.6914 4.7862 3.5578 18 6 5.6817 4.0000 3.1172 19 6 6.8870 3.8348 3.8139 20 7 7.8207 3.0480 3.3285 21 6 7.6807 2.3869 2.1881 22 9 8.6891 1.5978 1.7571 23 6 6.5413 2.4831 1.4359 24 6 5.5057 3.3042 1.8940 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6767 1.9564 -0.8899 32 1 3.9337 0.9285 -0.8891 33 1 3.9330 0.9287 0.8908 34 1 5.7863 6.0990 -0.0813 35 1 2.8011 5.5443 3.2533 36 1 7.0477 4.3531 4.7477 37 1 6.4441 1.9371 0.5092 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167128517.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:33 Heat of formation + Delta-G solvation = 35.247537 kcal Electronic energy + Delta-G solvation = -23429.539642 eV Core-core repulsion = 19928.630142 eV Total energy + Delta-G solvation = -3500.909499 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.97699 -42.23304 -39.42589 -38.35739 -35.86121 -34.06010 -33.42887 -33.10035 -30.93037 -29.51149 -27.14583 -25.86546 -25.28888 -24.25960 -22.68336 -21.81317 -20.59191 -19.64730 -19.08135 -18.19455 -17.34342 -17.03221 -16.73157 -16.35470 -16.01238 -15.68954 -15.40300 -15.18360 -15.16127 -14.85888 -14.59071 -14.31460 -13.83371 -13.54231 -13.40748 -13.16900 -12.95974 -12.49990 -12.46471 -12.18037 -11.99030 -11.81350 -11.72010 -11.52354 -11.37643 -11.12335 -11.10108 -10.77549 -9.95336 -9.40904 -9.17068 -8.06741 -5.60190 -0.73153 -0.19414 0.96027 1.42914 1.45122 1.52192 2.07929 2.31278 2.56468 2.81218 3.16183 3.23185 3.29406 3.46850 3.73972 3.94791 4.06656 4.12276 4.19821 4.30750 4.39416 4.46215 4.65285 4.73138 4.75004 4.84175 4.91423 4.99475 5.03924 5.15438 5.36152 5.41031 5.43792 5.45931 5.54825 5.62338 5.96042 6.28631 6.57367 6.89784 7.44094 7.62375 7.81973 8.88339 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.010638 B = 0.007592 C = 0.006090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.392662 B = 3687.371464 C = 4596.236572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.125 4.125 4 C 0.146 3.854 5 N -0.559 5.559 6 C -0.251 4.251 7 H 0.105 0.895 8 C -0.048 4.048 9 N -0.923 5.923 10 Si 0.987 3.013 11 H -0.290 1.290 12 H -0.301 1.301 13 H -0.260 1.260 14 C 0.576 3.424 15 N -0.575 5.575 16 C 0.321 3.679 17 N -0.540 5.540 18 C 0.089 3.911 19 C 0.174 3.826 20 N -0.504 5.504 21 C 0.237 3.763 22 F -0.122 7.122 23 C -0.112 4.112 24 C -0.101 4.101 25 H 0.067 0.933 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.039 0.961 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.051 0.949 34 H 0.256 0.744 35 H 0.208 0.792 36 H 0.208 0.792 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.907 -7.294 2.720 8.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.165 4.165 4 C 0.022 3.978 5 N -0.276 5.276 6 C -0.379 4.379 7 H 0.122 0.878 8 C -0.243 4.243 9 N -0.569 5.569 10 Si 0.815 3.185 11 H -0.217 1.217 12 H -0.228 1.228 13 H -0.184 1.184 14 C 0.326 3.674 15 N -0.296 5.296 16 C 0.031 3.969 17 N -0.259 5.259 18 C -0.040 4.040 19 C 0.002 3.998 20 N -0.219 5.219 21 C 0.095 3.905 22 F -0.101 7.101 23 C -0.136 4.136 24 C -0.115 4.115 25 H 0.086 0.914 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.225 0.775 36 H 0.225 0.775 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.662 -6.736 3.443 8.405 hybrid contribution 0.304 0.632 -1.758 1.893 sum -3.358 -6.104 1.685 7.167 Atomic orbital electron populations 1.21735 0.95285 1.02029 1.01473 1.21448 0.96408 0.95159 1.02404 1.22006 0.96171 0.97309 1.01017 1.21272 0.93628 0.81415 1.01456 1.41569 1.74562 1.11422 1.00070 1.19859 1.33961 0.99016 0.85028 0.87754 1.25623 0.99495 0.98690 1.00504 1.69035 1.41876 1.19656 1.26283 0.84931 0.76274 0.78284 0.79003 1.21731 1.22754 1.18428 1.17859 0.84865 0.81249 0.83383 1.68446 1.36092 1.11869 1.13240 1.25033 0.93306 0.92464 0.86146 1.68611 1.02046 1.19740 1.35480 1.20062 0.96513 0.94668 0.92732 1.22925 0.84875 0.92717 0.99242 1.66665 1.33517 1.08836 1.12838 1.17513 0.85581 0.94932 0.92497 1.91549 1.59379 1.70944 1.88268 1.21298 0.92100 0.99770 1.00413 1.19807 0.96900 0.98109 0.96681 0.91358 0.93469 0.93028 0.90972 0.91826 0.94211 0.93004 0.90102 0.93037 0.93147 0.77524 0.77520 0.83616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 9.91 71.98 0.71 -2.37 16 2 C -0.12 -2.70 5.93 30.59 0.18 -2.52 16 3 C -0.13 -3.92 5.54 30.59 0.17 -3.75 16 4 C 0.15 5.03 5.64 86.38 0.49 5.52 16 5 N -0.56 -24.48 2.01 -516.34 -1.04 -25.51 16 6 C -0.25 -11.87 9.78 84.09 0.82 -11.05 16 7 H 0.10 4.63 7.84 -2.91 -0.02 4.60 16 8 C -0.05 -2.41 5.40 84.91 0.46 -1.95 16 9 N -0.92 -49.17 9.83 21.67 0.21 -48.96 16 10 Si 0.99 42.17 29.56 68.60 2.03 44.20 16 11 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.30 -13.36 7.11 99.48 0.71 -12.65 16 13 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 14 C 0.58 26.31 3.68 133.95 0.49 26.80 16 15 N -0.57 -26.12 10.17 -196.73 -2.00 -28.12 16 16 C 0.32 12.81 12.21 180.88 2.21 15.02 16 17 N -0.54 -21.49 10.47 -193.86 -2.03 -23.52 16 18 C 0.09 3.65 6.63 40.19 0.27 3.92 16 19 C 0.17 6.20 11.28 85.24 0.96 7.16 16 20 N -0.50 -19.18 10.30 -196.56 -2.02 -21.20 16 21 C 0.24 9.38 8.33 84.26 0.70 10.09 16 22 F -0.12 -4.59 17.27 44.97 0.78 -3.81 16 23 C -0.11 -4.65 9.63 22.35 0.22 -4.43 16 24 C -0.10 -4.43 4.74 -21.18 -0.10 -4.53 16 25 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 27 H 0.05 1.08 8.14 -2.39 -0.02 1.07 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.04 1.39 8.14 -2.38 -0.02 1.38 16 31 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 32 H 0.08 2.53 8.04 -2.39 -0.02 2.51 16 33 H 0.05 1.69 8.04 -2.39 -0.02 1.67 16 34 H 0.26 14.01 8.32 -92.70 -0.77 13.24 16 35 H 0.21 6.54 8.06 -2.91 -0.02 6.52 16 36 H 0.21 5.71 8.06 -2.91 -0.02 5.69 16 37 H 0.15 5.97 7.76 -2.91 -0.02 5.94 16 Total: -1.00 -58.45 322.76 4.59 -53.86 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 1.08 Total: 15.17 kcal Atomic # 6 Polarization: 30.32 SS G_CDS: 7.58 Total: 37.90 kcal Atomic # 7 Polarization: -140.44 SS G_CDS: -6.88 Total: -147.32 kcal Atomic # 9 Polarization: -4.59 SS G_CDS: 0.78 Total: -3.81 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -58.45 4.59 -53.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128517.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.109 kcal (2) G-P(sol) polarization free energy of solvation -58.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds