Wall clock time and date at job start Tue Mar 31 2020 06:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86792 * 120.00147 * 2 1 4 4 H 1.48503 * 109.47433 * 239.99878 * 3 2 1 5 5 H 1.48499 * 109.47114 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 119.99623 * 3 2 1 7 7 C 1.37883 * 119.99652 * 180.02562 * 2 1 3 8 8 C 1.51271 * 120.84605 * 180.02562 * 7 2 1 9 9 C 1.53227 * 108.53351 * 231.32739 * 8 7 2 10 10 C 1.52968 * 109.40302 * 305.37093 * 9 8 7 11 11 H 1.09000 * 109.35088 * 303.52929 * 10 9 8 12 12 N 1.46499 * 109.41366 * 183.70758 * 10 9 8 13 13 C 1.39963 * 120.00123 * 84.64580 * 12 10 9 14 14 C 1.38705 * 120.47405 * 359.97438 * 13 12 10 15 15 N 1.31894 * 120.88805 * 180.02562 * 14 13 12 16 16 C 1.32393 * 121.93427 * 359.96842 * 15 14 13 17 17 C 1.39155 * 120.38328 * 359.93994 * 16 15 14 18 18 C 1.38759 * 119.34724 * 0.12724 * 17 16 15 19 19 O 1.35971 * 121.06920 * 180.23434 * 17 16 15 20 20 C 1.43210 * 116.66312 * 342.95805 * 19 17 16 21 21 C 1.53474 * 108.18989 * 45.95880 * 20 19 17 22 22 O 1.36124 * 119.14633 * 179.78997 * 16 15 14 23 23 C 1.52958 * 109.81734 * 63.59814 * 10 9 8 24 24 C 1.51268 * 120.84911 * 359.97438 * 7 2 1 25 25 H 0.97002 * 120.00107 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.62629 * 351.03429 * 8 7 2 27 27 H 1.08997 * 109.62841 * 111.60989 * 8 7 2 28 28 H 1.08998 * 109.48337 * 185.39372 * 9 8 7 29 29 H 1.08999 * 109.48517 * 65.34795 * 9 8 7 30 30 H 0.96997 * 119.99762 * 264.64801 * 12 10 9 31 31 H 1.08005 * 119.55100 * 0.31175 * 14 13 12 32 32 H 1.08001 * 120.79884 * 179.91798 * 18 17 16 33 33 H 1.09001 * 109.72092 * 286.28855 * 20 19 17 34 34 H 1.08995 * 109.75723 * 165.65780 * 20 19 17 35 35 H 1.09002 * 109.69599 * 180.51851 * 21 20 19 36 36 H 1.08997 * 109.69244 * 59.93232 * 21 20 19 37 37 H 1.09008 * 109.47884 * 56.38439 * 23 10 9 38 38 H 1.08994 * 109.48285 * 176.41924 * 23 10 9 39 39 H 1.08999 * 109.62768 * 8.96607 * 24 7 2 40 40 H 1.08996 * 109.78295 * 248.47549 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 6 3.5170 -1.2166 0.0000 9 6 3.9910 -2.1307 -1.1346 10 6 3.3401 -3.5068 -0.9841 11 1 3.5739 -3.9111 0.0008 12 7 3.8604 -4.4071 -2.0161 13 6 5.0624 -5.0926 -1.8056 14 6 5.7693 -4.9265 -0.6238 15 7 6.9030 -5.5680 -0.4170 16 6 7.4151 -6.3928 -1.3171 17 6 6.7603 -6.6103 -2.5255 18 6 5.5656 -5.9520 -2.7798 19 8 7.2713 -7.4580 -3.4579 20 6 8.6522 -7.8107 -3.3176 21 6 8.9091 -8.1655 -1.8467 22 8 8.5913 -7.0222 -1.0463 23 6 1.8232 -3.3824 -1.1357 24 6 1.2676 -2.5152 -0.0005 25 1 -0.4850 0.8401 -0.0004 26 1 3.8982 -0.2079 -0.1591 27 1 3.8771 -1.6007 0.9544 28 1 5.0751 -2.2345 -1.0892 29 1 3.7069 -1.6972 -2.0935 30 1 3.3719 -4.5281 -2.8453 31 1 5.3837 -4.2664 0.1393 32 1 5.0384 -6.1025 -3.7103 33 1 9.2785 -6.9669 -3.6071 34 1 8.8788 -8.6702 -3.9483 35 1 9.9577 -8.4296 -1.7103 36 1 8.2775 -9.0048 -1.5557 37 1 1.5905 -2.9192 -2.0946 38 1 1.3709 -4.3730 -1.0910 39 1 0.2035 -2.3409 -0.1601 40 1 1.4168 -3.0209 0.9534 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167844622.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:20 Heat of formation + Delta-G solvation = -40.641356 kcal Electronic energy + Delta-G solvation = -22982.767647 eV Core-core repulsion = 19569.734913 eV Total energy + Delta-G solvation = -3413.032735 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.38334 -39.14249 -37.41914 -37.19387 -34.47186 -32.21777 -31.58347 -30.25246 -29.72322 -28.11605 -26.84413 -24.70292 -23.75150 -22.19895 -21.49797 -20.89865 -19.57581 -18.78889 -18.03773 -17.32049 -16.52165 -15.83224 -15.57287 -15.21062 -15.05699 -14.64039 -14.47957 -14.42744 -13.87418 -13.49568 -13.27571 -13.05217 -12.62824 -12.52024 -12.11723 -11.87537 -11.62163 -11.50351 -11.31124 -11.06881 -10.85376 -10.69302 -10.26241 -10.20787 -9.97308 -9.65605 -9.34304 -9.04857 -8.80842 -8.61705 -8.52076 -7.09886 -6.15603 -4.07097 1.24540 1.48509 2.78234 2.87107 3.26609 3.33739 3.35077 3.74600 3.91148 4.01468 4.34796 4.48714 4.56597 4.66853 4.91857 4.99849 5.11102 5.14152 5.21666 5.34108 5.56254 5.76091 5.77705 5.87742 6.04493 6.31973 6.40770 6.51413 6.61958 6.63987 6.75542 6.78703 6.94476 7.00788 7.22261 7.33971 7.48683 7.59974 7.64185 7.75761 7.90218 8.20298 8.31334 8.90396 9.49126 10.93965 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.036025 B = 0.003371 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.046568 B = 8305.263233 C = 8610.747764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.077 3.923 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.492 4.492 8 C -0.010 4.010 9 C -0.121 4.121 10 C 0.157 3.843 11 H 0.072 0.928 12 N -0.726 5.726 13 C 0.192 3.808 14 C 0.035 3.965 15 N -0.426 5.426 16 C 0.182 3.818 17 C 0.060 3.940 18 C -0.170 4.170 19 O -0.307 6.307 20 C 0.020 3.980 21 C 0.028 3.972 22 O -0.300 6.300 23 C -0.113 4.113 24 C 0.013 3.987 25 H 0.265 0.735 26 H 0.026 0.974 27 H 0.021 0.979 28 H 0.037 0.963 29 H 0.055 0.945 30 H 0.397 0.603 31 H 0.168 0.832 32 H 0.141 0.859 33 H 0.078 0.922 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.037 0.963 39 H 0.061 0.939 40 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.359 -14.284 -6.994 20.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.719 3.281 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.199 1.199 7 C -0.511 4.511 8 C -0.048 4.048 9 C -0.160 4.160 10 C 0.053 3.947 11 H 0.090 0.910 12 N -0.353 5.353 13 C 0.082 3.918 14 C -0.128 4.128 15 N -0.144 5.144 16 C 0.001 3.999 17 C 0.012 3.988 18 C -0.201 4.201 19 O -0.220 6.220 20 C -0.056 4.056 21 C -0.049 4.049 22 O -0.211 6.211 23 C -0.152 4.152 24 C -0.025 4.025 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.039 0.961 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.232 0.768 31 H 0.185 0.815 32 H 0.159 0.841 33 H 0.096 0.904 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.055 0.945 39 H 0.079 0.921 40 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 13.637 -13.992 -6.104 20.470 hybrid contribution -0.021 0.631 -1.319 1.462 sum 13.616 -13.361 -7.424 20.470 Atomic orbital electron populations 1.69816 1.06172 1.27168 1.49500 1.24837 0.94725 0.98602 0.94392 0.86656 0.79405 0.82955 0.79067 1.20001 1.21870 1.19905 1.20015 0.89288 0.91493 1.50325 1.19612 0.96677 0.94733 0.93770 1.22042 0.97145 0.95517 1.01272 1.21118 0.95134 0.88756 0.89659 0.90965 1.45288 1.21202 1.47329 1.21456 1.18622 0.88185 0.91244 0.93731 1.22162 0.90917 1.02787 0.96947 1.66614 1.11486 1.06323 1.29931 1.19008 0.90574 1.00101 0.90184 1.19320 0.95808 0.95101 0.88583 1.20159 0.97313 1.01189 1.01414 1.86246 1.26174 1.61058 1.48499 1.23657 0.81465 1.02684 0.97761 1.23597 1.03549 0.87464 0.90249 1.86191 1.34017 1.42221 1.58637 1.21916 0.92072 0.98733 1.02448 1.19342 0.98803 0.92707 0.91600 0.92455 0.95519 0.96085 0.94441 0.92663 0.76804 0.81473 0.84129 0.90385 0.86078 0.85944 0.90655 0.92663 0.94467 0.92082 0.97496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.89 12.73 55.43 0.71 -24.19 16 2 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 3 Si 0.89 20.86 26.80 -169.99 -4.56 16.30 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.49 -12.37 5.51 -98.92 -0.55 -12.92 16 8 C -0.01 -0.22 5.59 -27.49 -0.15 -0.37 16 9 C -0.12 -2.31 5.45 -26.63 -0.15 -2.46 16 10 C 0.16 2.73 2.05 -67.97 -0.14 2.59 16 11 H 0.07 1.28 6.51 -51.93 -0.34 0.94 16 12 N -0.73 -10.76 5.26 -52.07 -0.27 -11.03 16 13 C 0.19 2.88 6.66 -83.57 -0.56 2.33 16 14 C 0.04 0.57 10.01 -17.35 -0.17 0.40 16 15 N -0.43 -7.35 10.37 -12.98 -0.13 -7.49 16 16 C 0.18 2.88 7.55 -16.97 -0.13 2.75 16 17 C 0.06 0.87 6.50 -39.05 -0.25 0.61 16 18 C -0.17 -2.37 9.96 -38.99 -0.39 -2.76 16 19 O -0.31 -3.74 10.42 -32.39 -0.34 -4.08 16 20 C 0.02 0.16 7.27 37.40 0.27 0.43 16 21 C 0.03 0.24 7.25 37.40 0.27 0.51 16 22 O -0.30 -4.22 10.51 -32.88 -0.35 -4.56 16 23 C -0.11 -2.17 5.40 -26.61 -0.14 -2.32 16 24 C 0.01 0.31 5.97 -27.46 -0.16 0.15 16 25 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.03 0.59 5.17 -51.93 -0.27 0.32 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.04 0.67 7.77 -51.93 -0.40 0.27 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.40 5.21 8.63 -40.82 -0.35 4.86 16 31 H 0.17 2.66 6.19 -52.48 -0.33 2.34 16 32 H 0.14 1.68 8.06 -52.49 -0.42 1.25 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.05 1.09 8.14 -51.92 -0.42 0.67 16 38 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 1.58 7.07 -51.93 -0.37 1.21 16 40 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 LS Contribution 319.05 15.07 4.81 4.81 Total: -1.00 -29.77 319.05 -7.90 -37.67 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -5.42 Total: 1.66 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -2.35 Total: -9.09 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 0.30 Total: -42.70 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: -0.68 Total: -8.64 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.56 Total: 16.30 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.77 -7.90 -37.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167844622.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.975 kcal (2) G-P(sol) polarization free energy of solvation -29.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds