Wall clock time and date at job start Tue Mar 31 2020 06:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86792 * 120.00147 * 2 1 4 4 H 1.48503 * 109.47433 * 239.99878 * 3 2 1 5 5 H 1.48499 * 109.47114 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 119.99623 * 3 2 1 7 7 C 1.37883 * 119.99652 * 180.02562 * 2 1 3 8 8 C 1.51271 * 120.84605 * 180.02562 * 7 2 1 9 9 C 1.53227 * 108.53351 * 231.32739 * 8 7 2 10 10 C 1.52968 * 109.40302 * 305.37093 * 9 8 7 11 11 H 1.09000 * 109.35088 * 303.52929 * 10 9 8 12 12 N 1.46499 * 109.41366 * 183.70758 * 10 9 8 13 13 C 1.39963 * 120.00123 * 84.64580 * 12 10 9 14 14 C 1.38705 * 120.47405 * 359.97438 * 13 12 10 15 15 N 1.31894 * 120.88805 * 180.02562 * 14 13 12 16 16 C 1.32393 * 121.93427 * 359.96842 * 15 14 13 17 17 C 1.39155 * 120.38328 * 359.93994 * 16 15 14 18 18 C 1.38759 * 119.34724 * 0.12724 * 17 16 15 19 19 O 1.35971 * 121.06920 * 180.23434 * 17 16 15 20 20 C 1.43210 * 116.66312 * 342.95805 * 19 17 16 21 21 C 1.53474 * 108.18989 * 45.95880 * 20 19 17 22 22 O 1.36124 * 119.14633 * 179.78997 * 16 15 14 23 23 C 1.52958 * 109.81734 * 63.59814 * 10 9 8 24 24 C 1.51268 * 120.84911 * 359.97438 * 7 2 1 25 25 H 0.97002 * 120.00107 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.62629 * 351.03429 * 8 7 2 27 27 H 1.08997 * 109.62841 * 111.60989 * 8 7 2 28 28 H 1.08998 * 109.48337 * 185.39372 * 9 8 7 29 29 H 1.08999 * 109.48517 * 65.34795 * 9 8 7 30 30 H 0.96997 * 119.99762 * 264.64801 * 12 10 9 31 31 H 1.08005 * 119.55100 * 0.31175 * 14 13 12 32 32 H 1.08001 * 120.79884 * 179.91798 * 18 17 16 33 33 H 1.09001 * 109.72092 * 286.28855 * 20 19 17 34 34 H 1.08995 * 109.75723 * 165.65780 * 20 19 17 35 35 H 1.09002 * 109.69599 * 180.51851 * 21 20 19 36 36 H 1.08997 * 109.69244 * 59.93232 * 21 20 19 37 37 H 1.09008 * 109.47884 * 56.38439 * 23 10 9 38 38 H 1.08994 * 109.48285 * 176.41924 * 23 10 9 39 39 H 1.08999 * 109.62768 * 8.96607 * 24 7 2 40 40 H 1.08996 * 109.78295 * 248.47549 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 6 3.5170 -1.2166 0.0000 9 6 3.9910 -2.1307 -1.1346 10 6 3.3401 -3.5068 -0.9841 11 1 3.5739 -3.9111 0.0008 12 7 3.8604 -4.4071 -2.0161 13 6 5.0624 -5.0926 -1.8056 14 6 5.7693 -4.9265 -0.6238 15 7 6.9030 -5.5680 -0.4170 16 6 7.4151 -6.3928 -1.3171 17 6 6.7603 -6.6103 -2.5255 18 6 5.5656 -5.9520 -2.7798 19 8 7.2713 -7.4580 -3.4579 20 6 8.6522 -7.8107 -3.3176 21 6 8.9091 -8.1655 -1.8467 22 8 8.5913 -7.0222 -1.0463 23 6 1.8232 -3.3824 -1.1357 24 6 1.2676 -2.5152 -0.0005 25 1 -0.4850 0.8401 -0.0004 26 1 3.8982 -0.2079 -0.1591 27 1 3.8771 -1.6007 0.9544 28 1 5.0751 -2.2345 -1.0892 29 1 3.7069 -1.6972 -2.0935 30 1 3.3719 -4.5281 -2.8453 31 1 5.3837 -4.2664 0.1393 32 1 5.0384 -6.1025 -3.7103 33 1 9.2785 -6.9669 -3.6071 34 1 8.8788 -8.6702 -3.9483 35 1 9.9577 -8.4296 -1.7103 36 1 8.2775 -9.0048 -1.5557 37 1 1.5905 -2.9192 -2.0946 38 1 1.3709 -4.3730 -1.0910 39 1 0.2035 -2.3409 -0.1601 40 1 1.4168 -3.0209 0.9534 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167844622.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:19 Heat of formation + Delta-G solvation = -61.784216 kcal Electronic energy + Delta-G solvation = -22983.684471 eV Core-core repulsion = 19569.734913 eV Total energy + Delta-G solvation = -3413.949558 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.37472 -40.28414 -38.75107 -38.24337 -35.95452 -33.85920 -32.67057 -31.62895 -31.13448 -29.34221 -28.28794 -25.68372 -24.90013 -23.77451 -23.16869 -21.99499 -21.14410 -19.79396 -19.02441 -18.37413 -18.12249 -17.00618 -16.69809 -16.41675 -16.35504 -16.01315 -15.61481 -15.37892 -15.16323 -14.74943 -14.68385 -14.38458 -14.13216 -14.04246 -13.76749 -13.26009 -13.02101 -12.73056 -12.58106 -12.43207 -12.29008 -12.16666 -11.93776 -11.73733 -11.57303 -11.13921 -10.83064 -10.54842 -10.52107 -10.41235 -9.74948 -8.27723 -8.16155 -6.09436 0.13731 0.35268 1.40258 1.42349 1.49116 1.87932 1.94804 2.41599 2.58839 2.76861 3.13458 3.22017 3.62416 3.85115 3.90552 4.00654 4.03099 4.15365 4.22246 4.28624 4.46745 4.53397 4.62264 4.73873 4.76511 4.81791 4.95866 4.99835 5.10670 5.14515 5.25635 5.27101 5.32687 5.61287 5.65725 5.70519 5.78180 5.86555 6.20018 6.27414 6.35856 6.77482 6.97431 7.08203 7.48706 8.94562 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.036025 B = 0.003371 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.046568 B = 8305.263233 C = 8610.747764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.024 3.976 3 Si 0.939 3.061 4 H -0.267 1.267 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.498 4.498 8 C -0.014 4.014 9 C -0.113 4.113 10 C 0.171 3.829 11 H 0.072 0.928 12 N -0.719 5.719 13 C 0.189 3.811 14 C 0.020 3.980 15 N -0.456 5.456 16 C 0.173 3.827 17 C 0.062 3.938 18 C -0.164 4.164 19 O -0.313 6.313 20 C 0.014 3.986 21 C 0.020 3.980 22 O -0.323 6.323 23 C -0.101 4.101 24 C 0.009 3.991 25 H 0.262 0.738 26 H 0.024 0.976 27 H 0.026 0.974 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.408 0.592 31 H 0.164 0.836 32 H 0.164 0.836 33 H 0.082 0.918 34 H 0.163 0.837 35 H 0.159 0.841 36 H 0.080 0.920 37 H 0.049 0.951 38 H 0.057 0.943 39 H 0.029 0.971 40 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.623 -16.023 -8.552 23.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.174 4.174 3 Si 0.766 3.234 4 H -0.192 1.192 5 H -0.223 1.223 6 H -0.193 1.193 7 C -0.517 4.517 8 C -0.052 4.052 9 C -0.152 4.152 10 C 0.066 3.934 11 H 0.090 0.910 12 N -0.347 5.347 13 C 0.080 3.920 14 C -0.143 4.143 15 N -0.175 5.175 16 C -0.008 4.008 17 C 0.013 3.987 18 C -0.195 4.195 19 O -0.226 6.226 20 C -0.060 4.060 21 C -0.056 4.056 22 O -0.234 6.234 23 C -0.139 4.139 24 C -0.029 4.029 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.245 0.755 31 H 0.181 0.819 32 H 0.181 0.819 33 H 0.100 0.900 34 H 0.180 0.820 35 H 0.177 0.823 36 H 0.098 0.902 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.047 0.953 40 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 15.938 -15.759 -7.681 23.693 hybrid contribution -0.585 0.987 -0.842 1.423 sum 15.353 -14.772 -8.523 22.947 Atomic orbital electron populations 1.69948 1.07537 1.27452 1.52098 1.25542 0.95284 1.01542 0.95041 0.85870 0.78350 0.79817 0.79391 1.19188 1.22287 1.19342 1.20648 0.91124 0.91918 1.48057 1.19650 0.94689 0.95550 0.95329 1.21912 0.98111 0.95719 0.99448 1.20733 0.93598 0.88496 0.90545 0.91005 1.44899 1.21435 1.47078 1.21281 1.18556 0.88017 0.91666 0.93751 1.22133 0.91267 1.03322 0.97547 1.66560 1.12256 1.07462 1.31223 1.19253 0.91120 0.99940 0.90514 1.19349 0.95744 0.95059 0.88534 1.20396 0.97144 1.00174 1.01769 1.86242 1.28443 1.60212 1.47723 1.24059 0.79344 1.04428 0.98169 1.24041 1.05812 0.85789 0.89932 1.86161 1.33219 1.43801 1.60252 1.21679 0.93414 0.98733 1.00119 1.19303 0.97131 0.93285 0.93203 0.92853 0.95759 0.95529 0.92935 0.93323 0.75524 0.81940 0.81884 0.89998 0.81969 0.82324 0.90156 0.93194 0.92437 0.95255 0.97754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.67 12.73 21.45 0.27 -53.40 16 2 C 0.02 1.31 5.46 84.66 0.46 1.77 16 3 Si 0.94 43.08 26.80 68.60 1.84 44.92 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.50 -25.19 5.51 -16.17 -0.09 -25.27 16 8 C -0.01 -0.61 5.59 30.11 0.17 -0.44 16 9 C -0.11 -4.15 5.45 30.66 0.17 -3.99 16 10 C 0.17 5.70 2.05 44.97 0.09 5.80 16 11 H 0.07 2.45 6.51 -2.39 -0.02 2.44 16 12 N -0.72 -19.73 5.26 -318.65 -1.68 -21.40 16 13 C 0.19 5.33 6.66 38.21 0.25 5.58 16 14 C 0.02 0.62 10.01 84.80 0.85 1.47 16 15 N -0.46 -15.50 10.37 -307.53 -3.19 -18.69 16 16 C 0.17 5.24 7.55 84.83 0.64 5.88 16 17 C 0.06 1.65 6.50 22.61 0.15 1.80 16 18 C -0.16 -4.17 9.96 22.65 0.23 -3.95 16 19 O -0.31 -6.67 10.42 -81.04 -0.84 -7.52 16 20 C 0.01 0.18 7.27 72.14 0.52 0.70 16 21 C 0.02 0.27 7.25 72.14 0.52 0.80 16 22 O -0.32 -8.56 10.51 -82.77 -0.87 -9.43 16 23 C -0.10 -3.79 5.40 30.67 0.17 -3.62 16 24 C 0.01 0.42 5.97 30.12 0.18 0.60 16 25 H 0.26 14.53 8.31 -92.71 -0.77 13.75 16 26 H 0.02 1.05 5.17 -2.39 -0.01 1.04 16 27 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.05 1.79 7.77 -2.39 -0.02 1.77 16 29 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.41 9.61 8.63 -92.71 -0.80 8.81 16 31 H 0.16 5.10 6.19 -2.91 -0.02 5.09 16 32 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 33 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.16 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.16 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 38 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.03 1.55 7.07 -2.39 -0.02 1.54 16 40 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 Total: -1.00 -65.50 319.05 0.11 -65.39 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.27 Total: 13.01 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 4.31 Total: -12.88 kcal Atomic # 7 Polarization: -88.90 SS G_CDS: -4.59 Total: -93.49 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -1.71 Total: -16.95 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.84 Total: 44.92 kcal Total: -65.50 0.11 -65.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167844622.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.609 kcal (2) G-P(sol) polarization free energy of solvation -65.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds