Wall clock time and date at job start Tue Mar 31 2020 05:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30866 * 125.98133 * 2 1 4 4 C 1.33250 * 109.84206 * 179.97438 * 3 2 1 5 5 C 1.50695 * 125.50361 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47182 * 90.02816 * 5 4 3 7 7 N 1.46892 * 109.47230 * 180.02562 * 6 5 4 8 8 N 1.30764 * 108.99748 * 0.22951 * 4 3 2 9 9 N 1.34697 * 125.98285 * 179.97438 * 2 1 3 10 10 C 1.40295 * 126.83807 * 359.97438 * 9 2 1 11 11 C 1.39058 * 119.96067 * 43.09803 * 10 9 2 12 12 C 1.38596 * 120.48093 * 179.97438 * 11 10 9 13 13 C 1.37600 * 120.38392 * 0.02562 * 12 11 10 14 14 C 1.40754 * 119.90063 * 359.97438 * 13 12 11 15 15 C 1.41310 * 120.23293 * 180.02562 * 14 13 12 16 16 H 1.07993 * 119.99977 * 206.20871 * 15 14 13 17 17 C 1.39933 * 120.00125 * 26.20319 * 15 14 13 18 18 N 1.30848 * 119.99714 * 12.75745 * 17 15 14 19 19 Si 1.86801 * 120.00280 * 192.76311 * 17 15 14 20 20 H 1.48497 * 109.46856 * 59.99773 * 19 17 15 21 21 H 1.48497 * 109.47033 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46892 * 299.99923 * 19 17 15 23 23 C 1.38541 * 119.95513 * 222.81947 * 10 9 2 24 24 F 1.35104 * 120.19105 * 0.02562 * 23 10 9 25 25 H 1.09003 * 109.47667 * 87.34999 * 1 2 3 26 26 H 1.08995 * 109.47241 * 207.35408 * 1 2 3 27 27 H 1.09008 * 109.47089 * 327.35154 * 1 2 3 28 28 H 1.09003 * 109.47293 * 330.03183 * 5 4 3 29 29 H 1.08998 * 109.47776 * 210.03160 * 5 4 3 30 30 H 1.08992 * 109.46922 * 59.99602 * 6 5 4 31 31 H 1.09000 * 109.46728 * 300.00360 * 6 5 4 32 32 H 1.00908 * 111.00133 * 180.02562 * 7 6 5 33 33 H 1.00904 * 111.00086 * 303.95147 * 7 6 5 34 34 H 1.08007 * 119.75902 * 359.97298 * 11 10 9 35 35 H 1.08001 * 119.81167 * 180.02562 * 12 11 10 36 36 H 1.07998 * 120.04898 * 180.02562 * 13 12 11 37 37 H 0.97004 * 119.99647 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2758 1.0590 0.0000 4 6 3.5558 0.6886 0.0006 5 6 4.7375 1.6237 0.0002 6 6 5.1375 1.9407 1.4426 7 7 6.2890 2.8527 1.4423 8 7 3.6210 -0.6174 -0.0040 9 7 2.2984 -1.0900 0.0005 10 6 1.8840 -2.4303 0.0016 11 6 0.8381 -2.8346 -0.8209 12 6 0.4204 -4.1560 -0.8288 13 6 1.0355 -5.0853 -0.0217 14 6 2.0958 -4.6937 0.8172 15 6 2.7330 -5.6423 1.6485 16 1 3.2180 -5.3229 2.5590 17 6 2.7353 -6.9955 1.2920 18 7 2.3758 -7.3550 0.0864 19 14 3.2514 -8.2886 2.5374 20 1 2.3490 -8.2294 3.7152 21 1 3.1681 -9.6349 1.9164 22 1 4.6480 -8.0293 2.9703 23 6 2.5211 -3.3507 0.8179 24 9 3.5409 -2.9614 1.6140 25 1 -0.3634 0.0475 -1.0266 26 1 -0.3633 -0.9127 0.4722 27 1 -0.3634 0.8654 0.5544 28 1 4.4701 2.5470 -0.5139 29 1 5.5747 1.1513 -0.5136 30 1 5.4048 1.0175 1.9566 31 1 4.3003 2.4132 1.9563 32 1 6.5729 3.0771 2.3842 33 1 7.0576 2.4646 0.9161 34 1 0.3478 -2.1135 -1.4582 35 1 -0.3928 -4.4583 -1.4722 36 1 0.7059 -6.1137 -0.0325 37 1 2.3771 -8.2931 -0.1606 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168987841.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:52 Heat of formation + Delta-G solvation = 50.537178 kcal Electronic energy + Delta-G solvation = -22544.691684 eV Core-core repulsion = 19044.445193 eV Total energy + Delta-G solvation = -3500.246491 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -47.43050 -41.83379 -37.76797 -35.78529 -34.44336 -32.93738 -32.30072 -30.08495 -29.51651 -28.58381 -26.93602 -25.64590 -23.04663 -22.06674 -21.19310 -20.13793 -19.81142 -18.00277 -16.38948 -16.17028 -15.91022 -15.90423 -15.25145 -14.98469 -14.55391 -14.38477 -14.12159 -13.73952 -13.51522 -13.19458 -12.91636 -12.72680 -12.37777 -12.16245 -12.02953 -11.83656 -11.64747 -11.51036 -11.27052 -11.22235 -10.98337 -10.72257 -10.29495 -10.10849 -9.71734 -9.58651 -9.37140 -9.07033 -8.82646 -7.78134 -7.51050 -7.04597 -4.71274 1.65661 2.37162 2.57200 2.80990 2.92870 2.96304 2.98912 3.15864 3.73231 4.15717 4.24853 4.59791 4.89663 5.08499 5.13897 5.19925 5.28412 5.47881 5.59529 5.60908 5.69378 5.86559 5.95779 6.05499 6.12227 6.22549 6.47739 6.53308 6.62877 6.82491 6.87374 6.96027 7.01968 7.18027 7.29377 7.34964 7.57087 7.68424 7.83963 8.22423 8.43277 8.47697 8.53164 9.87524 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.019038 B = 0.004533 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.393530 B = 6174.906596 C = 7342.700426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.274 3.726 3 N -0.545 5.545 4 C 0.205 3.795 5 C -0.016 4.016 6 C 0.068 3.932 7 N -0.850 5.850 8 N -0.299 5.299 9 N -0.304 5.304 10 C 0.117 3.883 11 C -0.218 4.218 12 C -0.096 4.096 13 C -0.137 4.137 14 C 0.090 3.910 15 C -0.442 4.442 16 H 0.085 0.915 17 C 0.074 3.926 18 N -0.786 5.786 19 Si 0.920 3.080 20 H -0.260 1.260 21 H -0.275 1.275 22 H -0.262 1.262 23 C 0.000 4.000 24 F -0.146 7.146 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.032 0.968 31 H 0.077 0.923 32 H 0.343 0.657 33 H 0.340 0.660 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.137 0.863 37 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.327 7.847 0.444 7.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.000 4.000 3 N -0.274 5.274 4 C -0.077 4.077 5 C -0.056 4.056 6 C -0.064 4.064 7 N -0.379 5.379 8 N -0.126 5.126 9 N -0.087 5.087 10 C 0.025 3.975 11 C -0.240 4.240 12 C -0.115 4.115 13 C -0.157 4.157 14 C 0.086 3.914 15 C -0.470 4.470 16 H 0.103 0.897 17 C -0.145 4.145 18 N -0.410 5.410 19 Si 0.744 3.256 20 H -0.185 1.185 21 H -0.199 1.199 22 H -0.187 1.187 23 C -0.023 4.023 24 F -0.125 7.125 25 H 0.106 0.894 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.114 0.886 29 H 0.100 0.900 30 H 0.051 0.949 31 H 0.095 0.905 32 H 0.155 0.845 33 H 0.152 0.848 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.154 0.846 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.244 8.035 -0.058 8.131 hybrid contribution 0.813 -1.530 0.968 1.985 sum -0.431 6.505 0.910 6.582 Atomic orbital electron populations 1.20414 0.83979 1.04762 1.04127 1.24370 0.96666 0.82069 0.96927 1.70299 1.01331 1.29001 1.26775 1.24012 0.93288 0.90347 1.00085 1.19731 0.91618 0.96510 0.97748 1.21682 0.94145 0.94637 0.95905 1.58719 1.10453 1.48645 1.20099 1.78262 0.97307 1.11401 1.25619 1.47461 1.03663 1.05782 1.51823 1.17330 0.99873 0.78457 1.01804 1.20086 1.02279 0.96949 1.04655 1.20579 0.99644 0.91922 0.99379 1.21421 0.95510 1.00003 0.98734 1.17556 0.91839 0.88716 0.93263 1.19536 1.29596 0.91092 1.06818 0.89660 1.25958 0.93014 0.99867 0.95675 1.69751 1.33943 1.19721 1.17619 0.86146 0.80408 0.78359 0.80722 1.18471 1.19940 1.18680 1.17670 0.92194 0.93838 0.98563 1.91335 1.57611 1.91400 1.72134 0.89361 0.89240 0.89112 0.88626 0.90013 0.94945 0.90494 0.84493 0.84777 0.87498 0.87350 0.84563 0.90147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.00 8.96 36.00 0.32 -0.68 16 2 C 0.27 5.14 7.81 -155.43 -1.21 3.93 16 3 N -0.54 -10.38 11.19 -8.08 -0.09 -10.47 16 4 C 0.21 3.91 7.39 -156.81 -1.16 2.75 16 5 C -0.02 -0.23 6.10 -27.88 -0.17 -0.40 16 6 C 0.07 0.90 6.77 -3.83 -0.03 0.87 16 7 N -0.85 -8.89 9.62 -10.37 -0.10 -8.99 16 8 N -0.30 -6.65 12.01 32.43 0.39 -6.26 16 9 N -0.30 -6.64 3.62 -8.02 -0.03 -6.67 16 10 C 0.12 2.67 6.10 -83.57 -0.51 2.16 16 11 C -0.22 -4.40 8.44 -39.15 -0.33 -4.73 16 12 C -0.10 -1.94 10.01 -39.68 -0.40 -2.34 16 13 C -0.14 -3.18 8.68 -38.86 -0.34 -3.51 16 14 C 0.09 2.30 5.58 -106.78 -0.60 1.70 16 15 C -0.44 -11.27 8.78 -37.78 -0.33 -11.60 16 16 H 0.09 2.16 7.74 -52.49 -0.41 1.76 16 17 C 0.07 1.74 5.23 -17.34 -0.09 1.65 16 18 N -0.79 -18.64 10.77 55.55 0.60 -18.04 16 19 Si 0.92 17.62 29.58 -169.99 -5.03 12.59 16 20 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 21 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 22 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 23 C 0.00 -0.01 7.28 -38.47 -0.28 -0.29 16 24 F -0.15 -3.86 15.98 2.25 0.04 -3.83 16 25 H 0.09 1.02 8.03 -51.93 -0.42 0.60 16 26 H 0.09 1.22 7.12 -51.93 -0.37 0.85 16 27 H 0.09 1.04 8.14 -51.92 -0.42 0.62 16 28 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.34 2.98 9.08 -39.29 -0.36 2.62 16 33 H 0.34 3.10 8.99 -39.29 -0.35 2.75 16 34 H 0.11 1.86 7.01 -52.48 -0.37 1.49 16 35 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 36 H 0.14 3.19 6.09 -52.49 -0.32 2.87 16 37 H 0.29 6.15 8.30 -40.82 -0.34 5.81 16 LS Contribution 322.35 15.07 4.86 4.86 Total: -1.00 -29.34 322.35 -8.75 -38.08 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -4.26 Total: 9.20 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -5.12 Total: -10.47 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: 0.77 Total: -50.43 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.04 Total: -3.83 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.03 Total: 12.59 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.34 -8.75 -38.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168987841.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.621 kcal (2) G-P(sol) polarization free energy of solvation -29.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds