Wall clock time and date at job start Tue Mar 31 2020 06:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52991 * 109.47218 * 108.19445 * 3 2 1 5 5 N 1.46501 * 109.47296 * 185.06408 * 4 3 2 6 6 C 1.46500 * 119.99823 * 275.55184 * 5 4 3 7 7 C 1.50701 * 109.47178 * 269.99974 * 6 5 4 8 8 H 1.07995 * 120.00215 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99812 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99931 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99880 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47154 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47281 * 119.99723 * 11 9 7 14 14 H 1.48499 * 109.46837 * 240.00081 * 11 9 7 15 15 C 1.34776 * 120.00131 * 95.55514 * 5 4 3 16 16 O 1.21278 * 120.00074 * 175.31822 * 15 5 4 17 17 C 1.50697 * 119.99881 * 355.30963 * 15 5 4 18 18 C 1.50697 * 115.55133 * 67.72363 * 17 15 5 19 19 O 1.20763 * 119.99872 * 219.66775 * 18 17 15 20 20 C 1.50703 * 120.00165 * 39.66093 * 18 17 15 21 21 C 1.52992 * 117.49898 * 151.19992 * 20 18 17 22 22 C 1.52997 * 60.00220 * 107.49202 * 21 20 18 23 23 C 1.53001 * 117.51885 * 213.42356 * 17 15 5 24 24 C 1.53000 * 60.00073 * 107.48379 * 23 17 15 25 25 H 1.09001 * 109.47242 * 348.18975 * 3 2 1 26 26 H 1.09001 * 109.46570 * 228.19379 * 3 2 1 27 27 H 1.09001 * 109.47101 * 65.06290 * 4 3 2 28 28 H 1.08999 * 109.47200 * 305.06433 * 4 3 2 29 29 H 1.09004 * 109.47339 * 29.99867 * 6 5 4 30 30 H 1.09002 * 109.46961 * 149.99546 * 6 5 4 31 31 H 0.97004 * 119.99466 * 180.02562 * 10 9 7 32 32 H 1.09003 * 115.55627 * 5.50955 * 20 18 17 33 33 H 1.08999 * 117.50366 * 0.02562 * 21 20 18 34 34 H 1.09005 * 117.49690 * 214.98125 * 21 20 18 35 35 H 1.09006 * 117.49843 * 107.48770 * 22 21 20 36 36 H 1.08993 * 117.50237 * 252.48871 * 22 21 20 37 37 H 1.09000 * 117.49831 * 214.97209 * 23 17 15 38 38 H 1.09002 * 117.49661 * 359.97438 * 23 17 15 39 39 H 1.09002 * 117.49384 * 252.51101 * 24 23 17 40 40 H 1.08996 * 117.51566 * 107.48499 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.4513 -1.3703 5 7 4.5778 0.3367 -1.4101 6 6 5.4121 1.4210 -0.8865 7 6 5.7111 2.4026 -1.9902 8 1 5.3193 2.2352 -2.9825 9 6 6.4859 3.5138 -1.7334 10 7 6.9636 3.7174 -0.5251 11 14 6.8560 4.7309 -3.1013 12 1 6.2062 4.2768 -4.3570 13 1 6.3319 6.0693 -2.7283 14 1 8.3244 4.8137 -3.3063 15 6 5.1533 -0.7663 -1.9284 16 8 6.3595 -0.8257 -2.0395 17 6 4.2979 -1.9258 -2.3699 18 6 3.4244 -1.6690 -3.5707 19 8 2.3004 -2.1093 -3.6049 20 6 3.9533 -0.8627 -4.7287 21 6 3.3873 -1.1656 -6.1174 22 6 2.9959 0.1261 -5.3969 23 6 4.8747 -3.3332 -2.2039 24 6 3.7505 -2.8538 -1.2835 25 1 2.9718 -1.0051 0.2103 26 1 2.9709 0.6859 0.7661 27 1 2.8299 1.4885 -1.5420 28 1 2.6826 -0.1796 -2.1453 29 1 4.8829 1.9302 -0.0810 30 1 6.3459 1.0087 -0.5040 31 1 7.5083 4.4994 -0.3443 32 1 5.0042 -0.5804 -4.6641 33 1 2.6319 -1.9477 -6.1935 34 1 4.0657 -1.0825 -6.9666 35 1 3.4169 1.0591 -5.7719 36 1 1.9834 0.1937 -4.9992 37 1 4.6223 -4.0733 -2.9633 38 1 5.8733 -3.4206 -1.7757 39 1 4.0094 -2.6258 -0.2495 40 1 2.7584 -3.2782 -1.4372 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187645765.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:58 Heat of formation + Delta-G solvation = 10.550593 kcal Electronic energy + Delta-G solvation = -23823.271522 eV Core-core repulsion = 20412.458637 eV Total energy + Delta-G solvation = -3410.812885 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.79831 -38.90198 -36.89442 -36.50535 -35.64775 -35.19519 -32.86365 -30.87197 -28.05578 -26.59726 -24.20204 -23.74612 -22.55821 -22.42288 -21.92120 -20.04491 -18.26021 -17.79475 -16.98371 -16.52031 -15.96399 -15.76281 -15.56867 -14.80566 -14.68357 -14.56120 -14.13762 -13.88603 -13.75776 -13.36297 -12.92417 -12.69833 -12.43214 -12.32535 -12.22408 -11.81747 -11.63188 -11.59006 -11.35032 -11.13326 -10.97121 -10.79944 -10.75822 -10.66995 -10.52111 -10.46634 -10.21381 -9.77197 -9.66918 -9.11167 -8.52061 -7.93834 -6.13539 -4.17812 1.67114 2.75704 2.86826 2.99433 3.24758 3.33188 3.35196 3.42938 3.57954 3.80430 3.95998 4.15220 4.37336 4.70156 4.75946 4.76415 4.82570 4.94401 4.98158 5.08559 5.17527 5.21971 5.24930 5.42092 5.53598 5.55741 5.63015 5.74925 5.81009 5.84127 6.01326 6.02908 6.06109 6.06541 6.84472 7.25414 7.34281 7.40280 7.62678 7.82427 8.10889 8.14359 8.72580 8.89458 9.47700 10.94778 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.012183 B = 0.006404 C = 0.005566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.647025 B = 4371.522346 C = 5029.096562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.217 3.783 3 C -0.051 4.051 4 C 0.118 3.882 5 N -0.586 5.586 6 C 0.245 3.755 7 C -0.526 4.526 8 H 0.060 0.940 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.551 3.449 16 O -0.519 6.519 17 C -0.218 4.218 18 C 0.435 3.565 19 O -0.453 6.453 20 C -0.218 4.218 21 C -0.151 4.151 22 C -0.143 4.143 23 C -0.119 4.119 24 C -0.145 4.145 25 H 0.108 0.892 26 H 0.119 0.881 27 H 0.095 0.905 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.047 0.953 31 H 0.263 0.737 32 H 0.131 0.869 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.883 -10.583 -3.805 12.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.101 4.101 3 C -0.093 4.093 4 C -0.008 4.008 5 N -0.317 5.317 6 C 0.126 3.874 7 C -0.565 4.565 8 H 0.078 0.922 9 C -0.139 4.139 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.336 3.664 16 O -0.394 6.394 17 C -0.223 4.223 18 C 0.312 3.688 19 O -0.327 6.327 20 C -0.237 4.237 21 C -0.188 4.188 22 C -0.180 4.180 23 C -0.156 4.156 24 C -0.182 4.182 25 H 0.126 0.874 26 H 0.137 0.863 27 H 0.113 0.887 28 H 0.088 0.912 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.149 0.851 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.134 0.866 39 H 0.127 0.873 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.395 -10.682 -3.763 13.526 hybrid contribution 0.853 0.932 -0.641 1.417 sum -6.542 -9.750 -4.403 12.540 Atomic orbital electron populations 1.81189 1.12957 1.09210 1.08634 1.29036 0.95059 0.92893 0.93138 1.19909 0.81592 1.05650 1.02112 1.21327 0.82094 1.03374 0.94004 1.48142 1.05347 1.18604 1.59635 1.19414 0.90446 0.82975 0.94517 1.21419 1.32195 1.06431 0.96472 0.92180 1.24906 0.95444 0.97908 0.95669 1.69923 1.34846 1.28579 1.19859 0.86478 0.78243 0.80814 0.82115 1.19772 1.20981 1.20889 1.18817 0.87317 0.81925 0.78367 1.90710 1.14069 1.80625 1.54025 1.22118 1.05110 0.94801 1.00223 1.22499 0.85565 0.75375 0.85395 1.90382 1.19419 1.43031 1.79914 1.22756 1.01991 1.05205 0.93703 1.22948 1.02991 1.00036 0.92815 1.22951 0.99136 0.94158 1.01749 1.22978 0.99668 0.91152 1.01800 1.23144 0.99769 0.99972 0.95340 0.87447 0.86349 0.88673 0.91223 0.94452 0.93535 0.92692 0.85116 0.88067 0.87776 0.87372 0.88081 0.87882 0.86645 0.87316 0.87046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.02 18.54 42.15 0.78 -6.24 16 2 C 0.22 2.92 15.43 -20.76 -0.32 2.60 16 3 C -0.05 -0.61 6.02 -29.52 -0.18 -0.78 16 4 C 0.12 1.74 5.20 -4.05 -0.02 1.71 16 5 N -0.59 -10.65 2.46 -175.06 -0.43 -11.08 16 6 C 0.24 5.60 5.15 -5.19 -0.03 5.57 16 7 C -0.53 -13.56 9.39 -34.44 -0.32 -13.88 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.89 -24.83 13.29 55.43 0.74 -24.09 16 11 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 C 0.55 10.02 6.19 -10.99 -0.07 9.95 16 16 O -0.52 -11.57 16.38 5.56 0.09 -11.48 16 17 C -0.22 -3.11 1.41 -156.81 -0.22 -3.33 16 18 C 0.43 6.29 4.32 -29.04 -0.13 6.17 16 19 O -0.45 -6.99 16.19 6.00 0.10 -6.89 16 20 C -0.22 -3.05 5.73 -91.78 -0.53 -3.58 16 21 C -0.15 -1.72 10.05 -26.74 -0.27 -1.99 16 22 C -0.14 -1.80 10.10 -26.73 -0.27 -2.07 16 23 C -0.12 -1.40 9.76 -26.73 -0.26 -1.66 16 24 C -0.15 -1.64 8.59 -26.73 -0.23 -1.87 16 25 H 0.11 1.10 5.73 -51.93 -0.30 0.80 16 26 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.09 1.44 8.11 -51.93 -0.42 1.02 16 28 H 0.07 1.01 4.79 -51.93 -0.25 0.76 16 29 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 30 H 0.05 1.21 7.49 -51.93 -0.39 0.82 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.13 2.04 7.81 -51.93 -0.41 1.63 16 33 H 0.10 1.13 7.95 -51.93 -0.41 0.72 16 34 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.11 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.12 1.39 8.04 -51.93 -0.42 0.97 16 39 H 0.11 1.09 7.08 -51.93 -0.37 0.73 16 40 H 0.11 1.21 7.68 -51.93 -0.40 0.81 16 LS Contribution 350.11 15.07 5.28 5.28 Total: -1.00 -31.38 350.11 -6.84 -38.22 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -5.44 Total: 2.20 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -2.94 Total: -1.58 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 1.09 Total: -41.42 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.19 Total: -18.37 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.38 -6.84 -38.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187645765.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.770 kcal (2) G-P(sol) polarization free energy of solvation -31.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds