Wall clock time and date at job start Tue Mar 31 2020 06:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52991 * 109.47218 * 108.19445 * 3 2 1 5 5 N 1.46501 * 109.47296 * 185.06408 * 4 3 2 6 6 C 1.46500 * 119.99823 * 275.55184 * 5 4 3 7 7 C 1.50701 * 109.47178 * 269.99974 * 6 5 4 8 8 H 1.07995 * 120.00215 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99812 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99931 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99880 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47154 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47281 * 119.99723 * 11 9 7 14 14 H 1.48499 * 109.46837 * 240.00081 * 11 9 7 15 15 C 1.34776 * 120.00131 * 95.55514 * 5 4 3 16 16 O 1.21278 * 120.00074 * 175.31822 * 15 5 4 17 17 C 1.50697 * 119.99881 * 355.30963 * 15 5 4 18 18 C 1.50697 * 115.55133 * 67.72363 * 17 15 5 19 19 O 1.20763 * 119.99872 * 219.66775 * 18 17 15 20 20 C 1.50703 * 120.00165 * 39.66093 * 18 17 15 21 21 C 1.52992 * 117.49898 * 151.19992 * 20 18 17 22 22 C 1.52997 * 60.00220 * 107.49202 * 21 20 18 23 23 C 1.53001 * 117.51885 * 213.42356 * 17 15 5 24 24 C 1.53000 * 60.00073 * 107.48379 * 23 17 15 25 25 H 1.09001 * 109.47242 * 348.18975 * 3 2 1 26 26 H 1.09001 * 109.46570 * 228.19379 * 3 2 1 27 27 H 1.09001 * 109.47101 * 65.06290 * 4 3 2 28 28 H 1.08999 * 109.47200 * 305.06433 * 4 3 2 29 29 H 1.09004 * 109.47339 * 29.99867 * 6 5 4 30 30 H 1.09002 * 109.46961 * 149.99546 * 6 5 4 31 31 H 0.97004 * 119.99466 * 180.02562 * 10 9 7 32 32 H 1.09003 * 115.55627 * 5.50955 * 20 18 17 33 33 H 1.08999 * 117.50366 * 0.02562 * 21 20 18 34 34 H 1.09005 * 117.49690 * 214.98125 * 21 20 18 35 35 H 1.09006 * 117.49843 * 107.48770 * 22 21 20 36 36 H 1.08993 * 117.50237 * 252.48871 * 22 21 20 37 37 H 1.09000 * 117.49831 * 214.97209 * 23 17 15 38 38 H 1.09002 * 117.49661 * 359.97438 * 23 17 15 39 39 H 1.09002 * 117.49384 * 252.51101 * 24 23 17 40 40 H 1.08996 * 117.51566 * 107.48499 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.4513 -1.3703 5 7 4.5778 0.3367 -1.4101 6 6 5.4121 1.4210 -0.8865 7 6 5.7111 2.4026 -1.9902 8 1 5.3193 2.2352 -2.9825 9 6 6.4859 3.5138 -1.7334 10 7 6.9636 3.7174 -0.5251 11 14 6.8560 4.7309 -3.1013 12 1 6.2062 4.2768 -4.3570 13 1 6.3319 6.0693 -2.7283 14 1 8.3244 4.8137 -3.3063 15 6 5.1533 -0.7663 -1.9284 16 8 6.3595 -0.8257 -2.0395 17 6 4.2979 -1.9258 -2.3699 18 6 3.4244 -1.6690 -3.5707 19 8 2.3004 -2.1093 -3.6049 20 6 3.9533 -0.8627 -4.7287 21 6 3.3873 -1.1656 -6.1174 22 6 2.9959 0.1261 -5.3969 23 6 4.8747 -3.3332 -2.2039 24 6 3.7505 -2.8538 -1.2835 25 1 2.9718 -1.0051 0.2103 26 1 2.9709 0.6859 0.7661 27 1 2.8299 1.4885 -1.5420 28 1 2.6826 -0.1796 -2.1453 29 1 4.8829 1.9302 -0.0810 30 1 6.3459 1.0087 -0.5040 31 1 7.5083 4.4994 -0.3443 32 1 5.0042 -0.5804 -4.6641 33 1 2.6319 -1.9477 -6.1935 34 1 4.0657 -1.0825 -6.9666 35 1 3.4169 1.0591 -5.7719 36 1 1.9834 0.1937 -4.9992 37 1 4.6223 -4.0733 -2.9633 38 1 5.8733 -3.4206 -1.7757 39 1 4.0094 -2.6258 -0.2495 40 1 2.7584 -3.2782 -1.4372 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187645765.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:58 Heat of formation + Delta-G solvation = -6.732450 kcal Electronic energy + Delta-G solvation = -23824.020971 eV Core-core repulsion = 20412.458637 eV Total energy + Delta-G solvation = -3411.562334 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.99869 -40.23084 -38.09834 -37.59058 -36.86591 -36.53466 -34.78553 -32.22808 -29.67653 -27.91038 -25.47158 -25.40802 -23.52056 -23.38183 -23.22166 -21.31600 -19.54447 -19.01062 -18.40548 -18.16201 -17.43345 -16.94259 -16.67583 -16.45970 -15.76097 -15.74201 -15.48434 -15.30035 -14.94051 -14.59555 -14.24330 -14.11001 -13.78158 -13.63603 -13.57498 -13.25023 -12.99876 -12.77439 -12.61121 -12.51998 -12.50172 -12.21882 -12.15469 -11.85781 -11.72642 -11.64287 -11.54453 -11.52667 -10.83585 -10.57325 -10.54559 -9.55612 -8.16652 -6.27423 0.56532 1.40367 1.43045 1.52347 1.55095 1.69854 1.78479 2.13454 2.43595 2.49191 2.76136 2.90682 3.03091 3.16128 3.52906 3.65989 3.75542 3.81014 3.94449 3.95635 3.98282 4.03814 4.16736 4.38022 4.59335 4.63987 4.66536 4.74152 4.83631 4.87862 4.94364 4.95170 5.09947 5.12437 5.14034 5.32619 5.58800 5.84811 6.13585 6.26686 6.54033 6.63401 6.81130 7.27847 7.45104 8.90571 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.012183 B = 0.006404 C = 0.005566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.647025 B = 4371.522346 C = 5029.096562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C 0.242 3.758 3 C -0.041 4.041 4 C 0.118 3.882 5 N -0.585 5.585 6 C 0.260 3.740 7 C -0.535 4.535 8 H 0.054 0.946 9 C 0.014 3.986 10 N -0.924 5.924 11 Si 0.953 3.047 12 H -0.267 1.267 13 H -0.275 1.275 14 H -0.285 1.285 15 C 0.553 3.447 16 O -0.568 6.568 17 C -0.236 4.236 18 C 0.441 3.559 19 O -0.463 6.463 20 C -0.241 4.241 21 C -0.127 4.127 22 C -0.146 4.146 23 C -0.110 4.110 24 C -0.125 4.125 25 H 0.130 0.870 26 H 0.133 0.867 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.040 0.960 30 H 0.010 0.990 31 H 0.265 0.735 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.123 0.877 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.123 0.877 38 H 0.111 0.889 39 H 0.123 0.877 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.022 -11.490 -4.487 14.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.159 5.159 2 C -0.076 4.076 3 C -0.082 4.082 4 C -0.007 4.007 5 N -0.315 5.315 6 C 0.139 3.861 7 C -0.574 4.574 8 H 0.072 0.928 9 C -0.185 4.185 10 N -0.564 5.564 11 Si 0.779 3.221 12 H -0.191 1.191 13 H -0.201 1.201 14 H -0.211 1.211 15 C 0.340 3.660 16 O -0.447 6.447 17 C -0.241 4.241 18 C 0.319 3.681 19 O -0.338 6.338 20 C -0.261 4.261 21 C -0.164 4.164 22 C -0.183 4.183 23 C -0.147 4.147 24 C -0.161 4.161 25 H 0.148 0.852 26 H 0.150 0.850 27 H 0.108 0.892 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.028 0.972 31 H 0.074 0.926 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.141 0.859 35 H 0.128 0.872 36 H 0.119 0.881 37 H 0.141 0.859 38 H 0.129 0.871 39 H 0.142 0.858 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.578 -11.599 -4.449 15.097 hybrid contribution 1.241 1.193 -0.443 1.777 sum -7.337 -10.407 -4.892 13.641 Atomic orbital electron populations 1.81225 1.14142 1.10690 1.09840 1.29084 0.94938 0.91596 0.91937 1.19877 0.80486 1.07272 1.00544 1.21410 0.79817 1.03455 0.96013 1.47982 1.06471 1.17685 1.59373 1.18926 0.89808 0.83474 0.93867 1.21721 1.31815 1.06955 0.96877 0.92755 1.25654 0.95485 0.99713 0.97651 1.70016 1.35676 1.29272 1.21479 0.85579 0.77742 0.78998 0.79805 1.19094 1.20102 1.21144 1.19361 0.87059 0.82489 0.77047 1.90679 1.16481 1.81671 1.55901 1.21940 1.06111 0.94190 1.01835 1.22437 0.85258 0.75042 0.85370 1.90378 1.19504 1.43662 1.80240 1.22727 1.01099 1.06804 0.95423 1.23068 1.02537 0.99073 0.91711 1.23011 0.98666 0.94758 1.01837 1.23126 0.99823 0.89527 1.02260 1.23332 1.00214 0.97280 0.95320 0.85206 0.84964 0.89231 0.90634 0.94155 0.97175 0.92602 0.87329 0.87348 0.85875 0.87171 0.88069 0.85898 0.87081 0.85841 0.85723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -14.53 18.54 20.01 0.37 -14.16 16 2 C 0.24 6.02 15.43 89.44 1.38 7.40 16 3 C -0.04 -0.88 6.02 28.79 0.17 -0.70 16 4 C 0.12 3.33 5.20 86.38 0.45 3.78 16 5 N -0.59 -21.23 2.46 -826.16 -2.03 -23.26 16 6 C 0.26 12.10 5.15 85.63 0.44 12.54 16 7 C -0.53 -27.96 9.39 25.60 0.24 -27.72 16 8 H 0.05 2.84 7.81 -2.91 -0.02 2.81 16 9 C 0.01 0.76 5.46 84.66 0.46 1.23 16 10 N -0.92 -52.09 13.29 21.45 0.28 -51.81 16 11 Si 0.95 42.55 29.54 68.60 2.03 44.57 16 12 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 13 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 14 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 15 C 0.55 20.16 6.19 87.66 0.54 20.70 16 16 O -0.57 -26.08 16.38 -3.02 -0.05 -26.13 16 17 C -0.24 -6.43 1.41 -53.67 -0.08 -6.50 16 18 C 0.44 12.13 4.32 29.10 0.13 12.26 16 19 O -0.46 -13.27 16.19 -1.46 -0.02 -13.29 16 20 C -0.24 -6.59 5.73 -11.54 -0.07 -6.66 16 21 C -0.13 -2.65 10.05 30.59 0.31 -2.34 16 22 C -0.15 -3.51 10.10 30.59 0.31 -3.20 16 23 C -0.11 -2.37 9.76 30.59 0.30 -2.08 16 24 C -0.12 -2.46 8.59 30.60 0.26 -2.20 16 25 H 0.13 2.25 5.73 -2.39 -0.01 2.24 16 26 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 27 H 0.09 2.64 8.11 -2.39 -0.02 2.62 16 28 H 0.08 2.08 4.79 -2.39 -0.01 2.07 16 29 H 0.04 1.84 8.07 -2.38 -0.02 1.83 16 30 H 0.01 0.55 7.49 -2.39 -0.02 0.53 16 31 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 32 H 0.11 3.45 7.81 -2.39 -0.02 3.43 16 33 H 0.11 2.14 7.95 -2.39 -0.02 2.12 16 34 H 0.12 2.08 8.14 -2.38 -0.02 2.06 16 35 H 0.11 2.57 8.14 -2.38 -0.02 2.55 16 36 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.11 2.53 8.04 -2.39 -0.02 2.51 16 39 H 0.12 2.08 7.08 -2.39 -0.02 2.06 16 40 H 0.12 2.23 7.68 -2.39 -0.02 2.21 16 Total: -1.00 -68.54 350.11 6.49 -62.06 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 1.06 Total: 15.51 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 4.85 Total: 6.50 kcal Atomic # 7 Polarization: -87.85 SS G_CDS: -1.37 Total: -89.23 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -0.07 Total: -39.42 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -68.54 6.49 -62.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187645765.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.323 kcal (2) G-P(sol) polarization free energy of solvation -68.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds