Wall clock time and date at job start Tue Mar 31 2020 06:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33112 * 1 3 3 O 1.35868 * 120.00046 * 2 1 4 4 C 1.42893 * 116.99812 * 5.57400 * 3 2 1 5 5 H 1.08999 * 109.47295 * 35.25444 * 4 3 2 6 6 C 1.50694 * 109.47303 * 275.25201 * 4 3 2 7 7 H 1.08005 * 120.00189 * 335.22416 * 6 4 3 8 8 C 1.37880 * 120.00118 * 155.21423 * 6 4 3 9 9 N 1.31519 * 119.99937 * 174.91527 * 8 6 4 10 10 Si 1.86799 * 120.00157 * 354.92642 * 8 6 4 11 11 H 1.48498 * 109.47331 * 94.63997 * 10 8 6 12 12 H 1.48499 * 109.47208 * 214.64529 * 10 8 6 13 13 H 1.48507 * 109.46677 * 334.63913 * 10 8 6 14 14 C 1.53003 * 109.47194 * 155.25616 * 4 3 2 15 15 C 1.50704 * 109.46634 * 294.52636 * 14 4 3 16 16 O 1.20826 * 120.00540 * 359.97438 * 15 14 4 17 17 O 1.34239 * 119.99574 * 180.02562 * 15 14 4 18 18 C 1.45200 * 116.99675 * 179.97438 * 17 15 14 19 19 C 1.52996 * 109.46965 * 179.97438 * 18 17 15 20 20 C 1.48048 * 120.00042 * 180.02562 * 2 1 3 21 21 C 1.39472 * 120.13698 * 179.72443 * 20 2 1 22 22 C 1.37988 * 119.86838 * 179.74019 * 21 20 2 23 23 C 1.38343 * 120.13008 * 0.53516 * 22 21 20 24 24 C 1.38340 * 120.26979 * 359.71786 * 23 22 21 25 25 C 1.37986 * 120.14036 * 0.02562 * 24 23 22 26 26 H 1.08010 * 119.99824 * 185.42355 * 1 2 3 27 27 H 1.07993 * 120.00390 * 5.42221 * 1 2 3 28 28 H 0.96998 * 119.99452 * 180.02562 * 9 8 6 29 29 H 1.09000 * 109.47284 * 174.52545 * 14 4 3 30 30 H 1.09000 * 109.47093 * 54.52124 * 14 4 3 31 31 H 1.08997 * 109.47688 * 300.00273 * 18 17 15 32 32 H 1.09004 * 109.47188 * 60.00017 * 18 17 15 33 33 H 1.09000 * 109.47437 * 179.97438 * 19 18 17 34 34 H 1.08997 * 109.47607 * 300.00894 * 19 18 17 35 35 H 1.09004 * 109.46688 * 60.00281 * 19 18 17 36 36 H 1.08002 * 120.06494 * 359.97438 * 21 20 2 37 37 H 1.07991 * 119.93508 * 180.25568 * 22 21 20 38 38 H 1.08001 * 119.86532 * 179.69887 * 23 22 21 39 39 H 1.08004 * 119.92942 * 180.02562 * 24 23 22 40 40 H 1.07998 * 120.06908 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3311 0.0000 0.0000 3 8 2.0105 1.1766 0.0000 4 6 1.2374 2.3720 0.1237 5 1 0.3885 2.1892 0.7825 6 6 0.7378 2.7900 -1.2352 7 1 1.2701 2.4843 -2.1239 8 6 -0.3990 3.5625 -1.3441 9 7 -0.7791 4.0110 -2.5207 10 14 -1.3992 3.9726 0.1793 11 1 -0.9728 5.2919 0.7112 12 1 -2.8407 4.0236 -0.1738 13 1 -1.1792 2.9280 1.2117 14 6 2.1085 3.4843 0.7110 15 6 2.4977 3.1254 2.1220 16 8 2.1169 2.0868 2.6081 17 8 3.2665 3.9601 2.8391 18 6 3.6015 3.5500 4.1911 19 6 4.4773 4.6198 4.8462 20 6 2.0714 -1.2821 -0.0006 21 6 3.4661 -1.2855 -0.0064 22 6 4.1504 -2.4837 -0.0015 23 6 3.4559 -3.6801 -0.0020 24 6 2.0725 -3.6833 -0.0015 25 6 1.3768 -2.4916 -0.0011 26 1 -0.5400 -0.9312 0.0884 27 1 -0.5400 0.9310 -0.0884 28 1 -1.5787 4.5547 -2.5972 29 1 1.5493 4.4199 0.7151 30 1 3.0069 3.6006 0.1048 31 1 2.6866 3.4243 4.7700 32 1 4.1445 2.6053 4.1602 33 1 4.7285 4.3123 5.8613 34 1 5.3922 4.7451 4.2672 35 1 3.9347 5.5647 4.8770 36 1 4.0094 -0.3520 -0.0109 37 1 5.2303 -2.4875 -0.0018 38 1 3.9958 -4.6154 -0.0030 39 1 1.5358 -4.6206 -0.0015 40 1 0.2969 -2.4955 -0.0012 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223636761.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:19 Heat of formation + Delta-G solvation = -82.556184 kcal Electronic energy + Delta-G solvation = -23088.451230 eV Core-core repulsion = 19641.308181 eV Total energy + Delta-G solvation = -3447.143049 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.05689 -39.16487 -37.86538 -36.13994 -33.47666 -32.24954 -31.74210 -30.86801 -30.45781 -28.45440 -26.55961 -23.48922 -23.09698 -22.05042 -21.61748 -20.28975 -18.67865 -17.72287 -17.24278 -16.80905 -16.34299 -15.93212 -15.72010 -14.84997 -14.50953 -14.31782 -14.11488 -13.92174 -13.31237 -13.23179 -13.03626 -12.79063 -12.62629 -12.34367 -12.21457 -12.03045 -11.60765 -11.53555 -11.43956 -11.10248 -10.93630 -10.75392 -10.70101 -10.30507 -10.15819 -9.87612 -9.77300 -9.43911 -8.85844 -8.72147 -8.63573 -7.22407 -6.32799 -4.37038 1.31817 1.64490 2.75847 3.04612 3.11918 3.20381 3.23567 3.28992 4.11375 4.17131 4.29164 4.94375 4.96509 5.02205 5.10622 5.14162 5.20901 5.26256 5.32270 5.46615 5.70065 5.73035 5.77417 5.79335 5.93634 6.00674 6.05555 6.11018 6.24126 6.31379 6.52736 6.62903 6.70255 6.72596 6.83934 6.88529 6.99986 7.20584 7.31404 7.51313 8.17383 8.28114 8.53373 8.83489 9.27419 10.79070 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.010134 B = 0.006673 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.204777 B = 4195.293318 C = 6337.591143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 C 0.131 3.869 3 O -0.318 6.318 4 C 0.193 3.807 5 H 0.052 0.948 6 C -0.537 4.537 7 H 0.087 0.913 8 C 0.085 3.915 9 N -0.878 5.878 10 Si 0.847 3.153 11 H -0.269 1.269 12 H -0.277 1.277 13 H -0.253 1.253 14 C -0.106 4.106 15 C 0.453 3.547 16 O -0.502 6.502 17 O -0.366 6.366 18 C 0.058 3.942 19 C -0.151 4.151 20 C -0.024 4.024 21 C -0.096 4.096 22 C -0.125 4.125 23 C -0.128 4.128 24 C -0.124 4.124 25 C -0.108 4.108 26 H 0.098 0.902 27 H 0.122 0.878 28 H 0.269 0.731 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.129 0.871 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.883 -6.197 9.886 14.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.341 4.341 2 C 0.085 3.915 3 O -0.232 6.232 4 C 0.137 3.863 5 H 0.070 0.930 6 C -0.574 4.574 7 H 0.105 0.895 8 C -0.120 4.120 9 N -0.514 5.514 10 Si 0.673 3.327 11 H -0.194 1.194 12 H -0.202 1.202 13 H -0.178 1.178 14 C -0.144 4.144 15 C 0.297 3.703 16 O -0.389 6.389 17 O -0.284 6.284 18 C -0.016 4.016 19 C -0.208 4.208 20 C -0.024 4.024 21 C -0.114 4.114 22 C -0.143 4.143 23 C -0.146 4.146 24 C -0.142 4.142 25 C -0.126 4.126 26 H 0.116 0.884 27 H 0.140 0.860 28 H 0.080 0.920 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.147 0.853 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.842 -6.348 9.936 14.161 hybrid contribution -0.898 0.358 0.799 1.255 sum 6.944 -5.990 10.736 14.119 Atomic orbital electron populations 1.24257 0.94593 1.03164 1.12115 1.19096 0.90609 0.84611 0.97166 1.85714 1.37808 1.12550 1.87119 1.20416 0.89590 0.79104 0.97181 0.93025 1.21294 1.10998 1.33451 0.91695 0.89463 1.24906 0.96626 0.94737 0.95714 1.69875 1.24701 1.33776 1.23064 0.87261 0.81039 0.79946 0.84444 1.19427 1.20234 1.17780 1.22193 1.03590 1.02267 0.86389 1.24661 0.74655 0.81690 0.89328 1.90633 1.51735 1.24889 1.71626 1.86571 1.64697 1.50068 1.27097 1.22904 0.99418 0.98501 0.80742 1.21784 0.99971 0.98958 1.00053 1.18702 0.93176 0.91076 0.99491 1.21338 0.93607 0.98447 0.97986 1.21068 0.99688 0.92432 1.01075 1.21127 0.94384 0.97791 1.01336 1.20981 0.94323 0.97535 1.01313 1.21225 1.00192 0.91243 0.99925 0.88414 0.86023 0.92048 0.87161 0.87193 0.91710 0.91571 0.90690 0.91563 0.91630 0.85302 0.86230 0.86470 0.86117 0.85445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.58 12.81 28.95 0.37 -6.21 16 2 C 0.13 2.88 6.71 -37.34 -0.25 2.63 16 3 O -0.32 -7.45 8.34 -33.26 -0.28 -7.73 16 4 C 0.19 4.57 0.75 -27.88 -0.02 4.55 16 5 H 0.05 1.30 3.41 -51.93 -0.18 1.12 16 6 C -0.54 -14.37 8.15 -34.44 -0.28 -14.65 16 7 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16 8 C 0.09 2.30 5.47 -17.82 -0.10 2.20 16 9 N -0.88 -25.21 13.96 55.43 0.77 -24.44 16 10 Si 0.85 19.86 26.06 -169.99 -4.43 15.43 16 11 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.25 -5.88 5.91 56.52 0.33 -5.55 16 14 C -0.11 -2.19 5.33 -27.88 -0.15 -2.34 16 15 C 0.45 9.01 7.84 36.01 0.28 9.29 16 16 O -0.50 -11.15 15.18 -23.93 -0.36 -11.51 16 17 O -0.37 -6.24 10.22 -39.28 -0.40 -6.64 16 18 C 0.06 0.80 6.19 37.16 0.23 1.03 16 19 C -0.15 -1.49 10.29 37.16 0.38 -1.11 16 20 C -0.02 -0.46 5.87 -104.95 -0.62 -1.07 16 21 C -0.10 -1.64 9.62 -39.21 -0.38 -2.02 16 22 C -0.12 -1.74 10.03 -39.63 -0.40 -2.14 16 23 C -0.13 -1.64 10.04 -39.50 -0.40 -2.04 16 24 C -0.12 -1.65 10.03 -39.64 -0.40 -2.05 16 25 C -0.11 -1.72 9.40 -39.21 -0.37 -2.09 16 26 H 0.10 1.80 6.08 -52.48 -0.32 1.48 16 27 H 0.12 2.92 4.97 -52.49 -0.26 2.66 16 28 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.11 2.19 7.08 -51.93 -0.37 1.82 16 30 H 0.11 2.10 8.14 -51.93 -0.42 1.68 16 31 H 0.06 0.88 8.13 -51.93 -0.42 0.45 16 32 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.13 2.25 7.61 -52.49 -0.40 1.85 16 37 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 39 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 40 H 0.13 1.87 6.19 -52.49 -0.32 1.54 16 LS Contribution 337.14 15.07 5.08 5.08 Total: -1.00 -30.90 337.14 -6.98 -37.88 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -5.28 Total: 7.94 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -2.09 Total: -16.02 kcal Atomic # 7 Polarization: -25.21 SS G_CDS: 0.77 Total: -24.44 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -1.04 Total: -25.88 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.43 Total: 15.43 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.90 -6.98 -37.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223636761.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.675 kcal (2) G-P(sol) polarization free energy of solvation -30.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds