Wall clock time and date at job start Tue Mar 31 2020 06:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33112 * 1 3 3 O 1.35868 * 120.00046 * 2 1 4 4 C 1.42893 * 116.99812 * 5.57400 * 3 2 1 5 5 H 1.08999 * 109.47295 * 35.25444 * 4 3 2 6 6 C 1.50694 * 109.47303 * 275.25201 * 4 3 2 7 7 H 1.08005 * 120.00189 * 335.22416 * 6 4 3 8 8 C 1.37880 * 120.00118 * 155.21423 * 6 4 3 9 9 N 1.31519 * 119.99937 * 174.91527 * 8 6 4 10 10 Si 1.86799 * 120.00157 * 354.92642 * 8 6 4 11 11 H 1.48498 * 109.47331 * 94.63997 * 10 8 6 12 12 H 1.48499 * 109.47208 * 214.64529 * 10 8 6 13 13 H 1.48507 * 109.46677 * 334.63913 * 10 8 6 14 14 C 1.53003 * 109.47194 * 155.25616 * 4 3 2 15 15 C 1.50704 * 109.46634 * 294.52636 * 14 4 3 16 16 O 1.20826 * 120.00540 * 359.97438 * 15 14 4 17 17 O 1.34239 * 119.99574 * 180.02562 * 15 14 4 18 18 C 1.45200 * 116.99675 * 179.97438 * 17 15 14 19 19 C 1.52996 * 109.46965 * 179.97438 * 18 17 15 20 20 C 1.48048 * 120.00042 * 180.02562 * 2 1 3 21 21 C 1.39472 * 120.13698 * 179.72443 * 20 2 1 22 22 C 1.37988 * 119.86838 * 179.74019 * 21 20 2 23 23 C 1.38343 * 120.13008 * 0.53516 * 22 21 20 24 24 C 1.38340 * 120.26979 * 359.71786 * 23 22 21 25 25 C 1.37986 * 120.14036 * 0.02562 * 24 23 22 26 26 H 1.08010 * 119.99824 * 185.42355 * 1 2 3 27 27 H 1.07993 * 120.00390 * 5.42221 * 1 2 3 28 28 H 0.96998 * 119.99452 * 180.02562 * 9 8 6 29 29 H 1.09000 * 109.47284 * 174.52545 * 14 4 3 30 30 H 1.09000 * 109.47093 * 54.52124 * 14 4 3 31 31 H 1.08997 * 109.47688 * 300.00273 * 18 17 15 32 32 H 1.09004 * 109.47188 * 60.00017 * 18 17 15 33 33 H 1.09000 * 109.47437 * 179.97438 * 19 18 17 34 34 H 1.08997 * 109.47607 * 300.00894 * 19 18 17 35 35 H 1.09004 * 109.46688 * 60.00281 * 19 18 17 36 36 H 1.08002 * 120.06494 * 359.97438 * 21 20 2 37 37 H 1.07991 * 119.93508 * 180.25568 * 22 21 20 38 38 H 1.08001 * 119.86532 * 179.69887 * 23 22 21 39 39 H 1.08004 * 119.92942 * 180.02562 * 24 23 22 40 40 H 1.07998 * 120.06908 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3311 0.0000 0.0000 3 8 2.0105 1.1766 0.0000 4 6 1.2374 2.3720 0.1237 5 1 0.3885 2.1892 0.7825 6 6 0.7378 2.7900 -1.2352 7 1 1.2701 2.4843 -2.1239 8 6 -0.3990 3.5625 -1.3441 9 7 -0.7791 4.0110 -2.5207 10 14 -1.3992 3.9726 0.1793 11 1 -0.9728 5.2919 0.7112 12 1 -2.8407 4.0236 -0.1738 13 1 -1.1792 2.9280 1.2117 14 6 2.1085 3.4843 0.7110 15 6 2.4977 3.1254 2.1220 16 8 2.1169 2.0868 2.6081 17 8 3.2665 3.9601 2.8391 18 6 3.6015 3.5500 4.1911 19 6 4.4773 4.6198 4.8462 20 6 2.0714 -1.2821 -0.0006 21 6 3.4661 -1.2855 -0.0064 22 6 4.1504 -2.4837 -0.0015 23 6 3.4559 -3.6801 -0.0020 24 6 2.0725 -3.6833 -0.0015 25 6 1.3768 -2.4916 -0.0011 26 1 -0.5400 -0.9312 0.0884 27 1 -0.5400 0.9310 -0.0884 28 1 -1.5787 4.5547 -2.5972 29 1 1.5493 4.4199 0.7151 30 1 3.0069 3.6006 0.1048 31 1 2.6866 3.4243 4.7700 32 1 4.1445 2.6053 4.1602 33 1 4.7285 4.3123 5.8613 34 1 5.3922 4.7451 4.2672 35 1 3.9347 5.5647 4.8770 36 1 4.0094 -0.3520 -0.0109 37 1 5.2303 -2.4875 -0.0018 38 1 3.9958 -4.6154 -0.0030 39 1 1.5358 -4.6206 -0.0015 40 1 0.2969 -2.4955 -0.0012 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223636761.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:18 Heat of formation + Delta-G solvation = -99.624413 kcal Electronic energy + Delta-G solvation = -23089.191364 eV Core-core repulsion = 19641.308181 eV Total energy + Delta-G solvation = -3447.883183 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.61417 -40.57900 -39.36446 -37.62576 -35.36635 -33.94340 -32.95467 -32.24731 -31.76228 -29.93040 -28.40837 -25.06696 -24.24938 -23.24686 -23.07377 -21.80095 -20.37847 -19.61053 -18.70793 -18.41291 -17.78639 -17.43930 -17.19072 -16.37845 -16.19361 -15.68064 -15.37024 -15.24394 -15.02318 -14.67203 -14.40712 -14.34573 -13.81479 -13.71008 -13.59701 -13.45457 -13.24470 -12.92230 -12.72377 -12.68755 -12.50364 -12.22007 -12.00236 -11.87142 -11.74511 -11.54073 -11.45608 -11.26451 -10.92535 -10.15419 -9.86729 -8.83224 -8.44636 -6.53893 0.03914 0.49300 1.16869 1.20781 1.28441 1.35328 1.67750 1.79040 2.17519 2.46933 2.90085 3.01086 3.75468 3.86933 3.98444 4.03437 4.08988 4.12750 4.22413 4.27307 4.31125 4.33431 4.54696 4.57790 4.60071 4.80948 4.84836 4.91463 4.96584 5.00693 5.12361 5.13970 5.22082 5.29621 5.43984 5.47849 5.57293 5.59284 5.86149 6.07171 6.09581 6.49237 6.75157 6.81927 7.16911 8.71529 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.010134 B = 0.006673 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.204777 B = 4195.293318 C = 6337.591143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.325 4.325 2 C 0.120 3.880 3 O -0.329 6.329 4 C 0.199 3.801 5 H 0.041 0.959 6 C -0.538 4.538 7 H 0.041 0.959 8 C 0.043 3.957 9 N -0.923 5.923 10 Si 0.905 3.095 11 H -0.245 1.245 12 H -0.272 1.272 13 H -0.254 1.254 14 C -0.107 4.107 15 C 0.463 3.537 16 O -0.529 6.529 17 O -0.362 6.362 18 C 0.048 3.952 19 C -0.143 4.143 20 C -0.064 4.064 21 C -0.116 4.116 22 C -0.123 4.123 23 C -0.113 4.113 24 C -0.118 4.118 25 C -0.115 4.115 26 H 0.126 0.874 27 H 0.094 0.906 28 H 0.274 0.726 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.149 0.851 38 H 0.160 0.840 39 H 0.158 0.842 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.090 -7.787 12.037 16.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.363 4.363 2 C 0.074 3.926 3 O -0.243 6.243 4 C 0.143 3.857 5 H 0.059 0.941 6 C -0.576 4.576 7 H 0.060 0.940 8 C -0.159 4.159 9 N -0.561 5.561 10 Si 0.728 3.272 11 H -0.169 1.169 12 H -0.197 1.197 13 H -0.179 1.179 14 C -0.145 4.145 15 C 0.307 3.693 16 O -0.418 6.418 17 O -0.280 6.280 18 C -0.026 4.026 19 C -0.199 4.199 20 C -0.064 4.064 21 C -0.134 4.134 22 C -0.141 4.141 23 C -0.131 4.131 24 C -0.136 4.136 25 C -0.133 4.133 26 H 0.144 0.856 27 H 0.112 0.888 28 H 0.083 0.917 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.122 0.878 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.130 0.870 37 H 0.167 0.833 38 H 0.178 0.822 39 H 0.176 0.824 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.076 -7.921 12.100 17.074 hybrid contribution -1.125 0.705 0.118 1.333 sum 7.951 -7.215 12.218 16.266 Atomic orbital electron populations 1.24257 0.94794 1.03204 1.14028 1.19766 0.91334 0.85331 0.96155 1.85704 1.38184 1.13138 1.87273 1.20222 0.90194 0.80069 0.95208 0.94113 1.21273 1.11088 1.33435 0.91774 0.94041 1.25563 0.97347 0.94440 0.98526 1.69991 1.25620 1.35110 1.25329 0.86348 0.79530 0.80607 0.80764 1.16885 1.19735 1.17872 1.21981 1.03773 1.01148 0.87619 1.24218 0.74630 0.81396 0.89044 1.90624 1.52989 1.26042 1.72173 1.86540 1.63549 1.49101 1.28778 1.23328 1.00239 1.00147 0.78845 1.21816 0.99200 0.97796 1.01128 1.18788 0.94025 0.90429 1.03175 1.21373 0.93197 0.99420 0.99426 1.21410 1.01238 0.91612 0.99820 1.21661 0.94369 0.98866 0.98202 1.21436 0.94957 0.97782 0.99415 1.21430 1.00762 0.91256 0.99870 0.85578 0.88823 0.91652 0.86194 0.86112 0.91660 0.91618 0.87837 0.91138 0.91232 0.87025 0.83329 0.82242 0.82410 0.84871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.32 -14.77 12.81 66.67 0.85 -13.91 16 2 C 0.12 5.51 6.71 23.72 0.16 5.67 16 3 O -0.33 -16.25 8.34 -78.74 -0.66 -16.90 16 4 C 0.20 9.84 0.75 29.85 0.02 9.86 16 5 H 0.04 2.13 3.41 -2.39 -0.01 2.12 16 6 C -0.54 -30.42 8.15 25.60 0.21 -30.22 16 7 H 0.04 2.66 8.06 -2.91 -0.02 2.64 16 8 C 0.04 2.38 5.47 84.65 0.46 2.84 16 9 N -0.92 -54.99 13.96 21.45 0.30 -54.69 16 10 Si 0.90 41.77 26.06 68.60 1.79 43.56 16 11 H -0.24 -10.33 7.11 99.48 0.71 -9.62 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 13 H -0.25 -11.72 5.91 99.48 0.59 -11.13 16 14 C -0.11 -4.51 5.33 29.85 0.16 -4.35 16 15 C 0.46 18.40 7.84 71.24 0.56 18.96 16 16 O -0.53 -23.76 15.18 26.92 0.41 -23.35 16 17 O -0.36 -11.98 10.22 -51.50 -0.53 -12.51 16 18 C 0.05 1.23 6.19 71.98 0.45 1.67 16 19 C -0.14 -2.43 10.29 71.98 0.74 -1.69 16 20 C -0.06 -2.45 5.87 -20.08 -0.12 -2.57 16 21 C -0.12 -4.00 9.62 22.51 0.22 -3.79 16 22 C -0.12 -3.13 10.03 22.24 0.22 -2.91 16 23 C -0.11 -2.41 10.04 22.32 0.22 -2.19 16 24 C -0.12 -2.74 10.03 22.23 0.22 -2.51 16 25 C -0.12 -3.55 9.40 22.51 0.21 -3.34 16 26 H 0.13 4.78 6.08 -2.91 -0.02 4.76 16 27 H 0.09 4.75 4.97 -2.91 -0.01 4.74 16 28 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 29 H 0.12 4.75 7.08 -2.39 -0.02 4.73 16 30 H 0.12 4.73 8.14 -2.39 -0.02 4.71 16 31 H 0.06 1.68 8.13 -2.39 -0.02 1.66 16 32 H 0.07 1.70 8.13 -2.39 -0.02 1.68 16 33 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.11 4.09 7.61 -2.91 -0.02 4.07 16 37 H 0.15 2.85 8.06 -2.92 -0.02 2.83 16 38 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 39 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 40 H 0.13 3.80 6.19 -2.91 -0.02 3.78 16 Total: -1.00 -71.43 337.14 6.83 -64.61 By element: Atomic # 1 Polarization: 26.83 SS G_CDS: 0.92 Total: 27.75 kcal Atomic # 6 Polarization: -33.06 SS G_CDS: 4.59 Total: -28.46 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.30 Total: -54.69 kcal Atomic # 8 Polarization: -51.98 SS G_CDS: -0.77 Total: -52.76 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 1.79 Total: 43.56 kcal Total: -71.43 6.83 -64.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223636761.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.018 kcal (2) G-P(sol) polarization free energy of solvation -71.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds