Wall clock time and date at job start Tue Mar 31 2020 06:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45201 * 109.46884 * 2 1 4 4 C 1.34222 * 117.00137 * 179.97438 * 3 2 1 5 5 O 1.20833 * 119.99852 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00432 * 179.71953 * 4 3 2 7 7 C 1.52996 * 109.47298 * 180.27351 * 6 4 3 8 8 H 1.09001 * 109.46673 * 55.01184 * 7 6 4 9 9 C 1.50704 * 109.47040 * 175.00070 * 7 6 4 10 10 H 1.07998 * 120.00351 * 240.00624 * 9 7 6 11 11 C 1.37884 * 119.99725 * 60.00594 * 9 7 6 12 12 N 1.31512 * 119.99800 * 359.97438 * 11 9 7 13 13 Si 1.86801 * 119.99865 * 179.97438 * 11 9 7 14 14 H 1.48507 * 109.47316 * 59.99897 * 13 11 9 15 15 H 1.48498 * 109.47154 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47074 * 299.99789 * 13 11 9 17 17 O 1.42895 * 109.47618 * 295.00507 * 7 6 4 18 18 C 1.42897 * 114.00212 * 149.99844 * 17 7 6 19 19 H 1.09000 * 112.50782 * 20.32883 * 18 17 7 20 20 C 1.52884 * 113.16583 * 150.22730 * 18 17 7 21 21 C 1.51426 * 84.72987 * 115.22397 * 20 18 17 22 22 C 1.38954 * 145.52834 * 179.97438 * 21 20 18 23 23 C 1.37975 * 120.32382 * 180.02562 * 22 21 20 24 24 C 1.38236 * 120.17612 * 0.02562 * 23 22 21 25 25 C 1.38179 * 119.75207 * 359.97438 * 24 23 22 26 26 C 1.38237 * 120.12323 * 0.02562 * 25 24 23 27 27 H 1.08999 * 109.47003 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47361 * 299.99753 * 1 2 3 29 29 H 1.08997 * 109.47194 * 60.00322 * 1 2 3 30 30 H 1.08997 * 109.46911 * 239.99959 * 2 1 3 31 31 H 1.08997 * 109.46745 * 119.99968 * 2 1 3 32 32 H 1.09000 * 109.47190 * 300.28287 * 6 4 3 33 33 H 1.09006 * 109.46468 * 60.27870 * 6 4 3 34 34 H 0.97008 * 119.99666 * 180.02562 * 12 11 9 35 35 H 1.08998 * 113.98960 * 229.17135 * 20 18 17 36 36 H 1.09003 * 113.99206 * 1.28223 * 20 18 17 37 37 H 1.08000 * 119.83560 * 0.02562 * 22 21 20 38 38 H 1.07998 * 119.91056 * 180.02562 * 23 22 21 39 39 H 1.08004 * 120.12811 * 180.02562 * 24 23 22 40 40 H 1.07995 * 119.93982 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 -0.0058 7 6 5.4485 2.8574 -0.0107 8 1 5.7776 2.2472 -0.8518 9 6 6.0238 4.2442 -0.1408 10 1 6.6557 4.4901 -0.9815 11 6 5.7434 5.1992 0.8134 12 7 4.9735 4.8999 1.8368 13 14 6.4570 6.9180 0.6525 14 1 5.9899 7.5312 -0.6169 15 1 6.0080 7.7496 1.7979 16 1 7.9399 6.8399 0.6481 17 8 5.8986 2.2677 1.2106 18 6 7.1213 1.5384 1.0880 19 1 7.6932 1.8279 0.2063 20 6 7.9521 1.5370 2.3714 21 6 7.6894 0.0456 2.3741 22 6 7.9075 -1.1548 3.0391 23 6 7.3800 -2.3303 2.5457 24 6 6.6301 -2.3220 1.3844 25 6 6.4099 -1.1312 0.7189 26 6 6.9380 0.0472 1.2123 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.5816 3.4668 -0.8963 33 1 3.5877 3.4723 0.8837 34 1 4.7759 5.5720 2.5079 35 1 8.9986 1.8024 2.2222 36 1 7.4874 2.0702 3.2008 37 1 8.4929 -1.1676 3.9466 38 1 7.5533 -3.2595 3.0681 39 1 6.2171 -3.2426 0.9991 40 1 5.8242 -1.1211 -0.1884 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224061899.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:21 Heat of formation + Delta-G solvation = -82.305059 kcal Electronic energy + Delta-G solvation = -23573.961724 eV Core-core repulsion = 20126.829565 eV Total energy + Delta-G solvation = -3447.132159 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.43998 -41.13936 -38.41513 -37.29989 -35.86497 -34.19897 -32.76954 -31.67396 -31.39867 -28.05419 -27.89088 -24.99670 -24.50389 -23.22645 -22.41338 -21.51147 -20.93840 -18.91707 -18.35521 -17.63729 -17.52008 -17.23101 -16.97717 -16.35193 -16.19051 -15.47888 -15.19524 -14.95455 -14.52501 -14.32836 -13.96492 -13.92459 -13.77004 -13.56362 -13.22033 -13.01259 -12.91338 -12.76944 -12.66221 -12.49873 -12.48770 -12.36866 -11.84013 -11.68132 -11.44224 -11.30063 -11.21042 -11.11832 -10.59473 -9.88952 -9.66368 -9.44091 -8.06841 -6.33415 0.46725 0.55060 1.44323 1.47182 1.48118 1.55377 1.93225 2.44773 2.85994 3.12506 3.36329 3.45561 3.70225 3.99170 4.02350 4.04818 4.17435 4.23659 4.29917 4.36609 4.40333 4.63960 4.66776 4.75513 4.81892 4.88395 4.92125 4.93795 4.96776 5.03986 5.15449 5.17249 5.28369 5.47941 5.54776 5.60132 5.64458 5.78219 6.00718 6.13527 6.18380 6.61321 7.00524 7.08116 7.47169 8.93761 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.010122 B = 0.007445 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.524142 B = 3760.082597 C = 6133.014628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.052 3.948 3 O -0.372 6.372 4 C 0.459 3.541 5 O -0.520 6.520 6 C -0.098 4.098 7 C 0.232 3.768 8 H 0.003 0.997 9 C -0.580 4.580 10 H 0.056 0.944 11 C 0.049 3.951 12 N -0.881 5.881 13 Si 0.951 3.049 14 H -0.268 1.268 15 H -0.283 1.283 16 H -0.275 1.275 17 O -0.359 6.359 18 C 0.131 3.869 19 H 0.062 0.938 20 C -0.064 4.064 21 C -0.139 4.139 22 C -0.112 4.112 23 C -0.118 4.118 24 C -0.130 4.130 25 C -0.086 4.086 26 C -0.157 4.157 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.265 0.735 35 H 0.111 0.889 36 H 0.085 0.915 37 H 0.139 0.861 38 H 0.159 0.841 39 H 0.148 0.852 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.848 -10.951 -0.190 11.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.021 4.021 3 O -0.290 6.290 4 C 0.303 3.697 5 O -0.409 6.409 6 C -0.135 4.135 7 C 0.175 3.825 8 H 0.021 0.979 9 C -0.617 4.617 10 H 0.074 0.926 11 C -0.155 4.155 12 N -0.517 5.517 13 Si 0.776 3.224 14 H -0.193 1.193 15 H -0.208 1.208 16 H -0.200 1.200 17 O -0.278 6.278 18 C 0.072 3.928 19 H 0.080 0.920 20 C -0.101 4.101 21 C -0.139 4.139 22 C -0.130 4.130 23 C -0.136 4.136 24 C -0.147 4.147 25 C -0.104 4.104 26 C -0.157 4.157 27 H 0.122 0.878 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.121 0.879 33 H 0.133 0.867 34 H 0.074 0.926 35 H 0.129 0.871 36 H 0.103 0.897 37 H 0.157 0.843 38 H 0.176 0.824 39 H 0.166 0.834 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.865 -11.194 0.147 11.349 hybrid contribution 0.365 0.959 -0.384 1.096 sum -1.500 -10.234 -0.236 10.346 Atomic orbital electron populations 1.21801 0.90176 1.04339 1.03551 1.23195 0.97241 0.79894 1.01817 1.86548 1.24776 1.33347 1.84348 1.24544 0.80219 0.93681 0.71240 1.90565 1.60581 1.43643 1.46108 1.21658 0.96965 0.88982 1.05933 1.19351 0.89028 0.91242 0.82834 0.97865 1.21658 1.33325 0.96743 1.09970 0.92575 1.25616 0.94134 1.01705 0.94063 1.70012 1.35480 1.34976 1.11241 0.85743 0.78890 0.79857 0.77865 1.19316 1.20787 1.20022 1.88051 1.37410 1.67724 1.34572 1.21845 0.87868 0.85555 0.97534 0.92045 1.21861 1.00660 0.90059 0.97529 1.22466 0.99066 0.95797 0.96614 1.20797 1.01144 0.90547 1.00466 1.21298 0.97630 0.98378 0.96275 1.21320 0.99807 0.97295 0.96312 1.20397 0.98344 0.91386 1.00295 1.22685 0.98179 0.96701 0.98161 0.87850 0.91740 0.91100 0.91489 0.92585 0.87879 0.86713 0.92605 0.87065 0.89657 0.84305 0.82376 0.83382 0.87732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 10.29 71.98 0.74 -2.18 16 2 C 0.05 1.54 6.19 71.98 0.45 1.98 16 3 O -0.37 -14.22 10.22 -51.34 -0.52 -14.75 16 4 C 0.46 20.32 7.84 71.23 0.56 20.88 16 5 O -0.52 -24.29 13.15 27.01 0.36 -23.94 16 6 C -0.10 -4.65 5.22 29.85 0.16 -4.50 16 7 C 0.23 11.96 1.69 29.85 0.05 12.01 16 8 H 0.00 0.17 7.55 -2.39 -0.02 0.15 16 9 C -0.58 -31.01 8.90 25.60 0.23 -30.78 16 10 H 0.06 2.96 7.81 -2.91 -0.02 2.94 16 11 C 0.05 2.59 5.24 84.66 0.44 3.03 16 12 N -0.88 -48.20 10.93 21.45 0.23 -47.97 16 13 Si 0.95 41.41 29.54 68.60 2.03 43.44 16 14 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 15 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 17 O -0.36 -18.94 8.56 -135.18 -1.16 -20.10 16 18 C 0.13 6.02 4.09 27.47 0.11 6.13 16 19 H 0.06 2.84 7.78 -2.39 -0.02 2.83 16 20 C -0.06 -2.52 8.21 30.04 0.25 -2.27 16 21 C -0.14 -5.26 7.32 -21.79 -0.16 -5.42 16 22 C -0.11 -3.41 10.05 22.38 0.22 -3.18 16 23 C -0.12 -3.18 10.03 22.21 0.22 -2.96 16 24 C -0.13 -3.89 10.06 22.26 0.22 -3.67 16 25 C -0.09 -3.30 9.22 22.26 0.21 -3.10 16 26 C -0.16 -6.64 7.13 -19.82 -0.14 -6.78 16 27 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.90 8.13 -2.39 -0.02 1.88 16 31 H 0.06 1.73 8.13 -2.39 -0.02 1.71 16 32 H 0.10 4.54 8.14 -2.39 -0.02 4.52 16 33 H 0.12 6.02 6.22 -2.38 -0.01 6.00 16 34 H 0.26 13.81 8.31 -92.70 -0.77 13.04 16 35 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 36 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 37 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 38 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 39 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 40 H 0.10 4.19 7.17 -2.91 -0.02 4.17 16 Total: -1.00 -64.51 339.32 5.52 -58.99 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 1.03 Total: 25.13 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: 3.56 Total: -20.80 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: 0.23 Total: -47.97 kcal Atomic # 8 Polarization: -57.46 SS G_CDS: -1.33 Total: -58.78 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -64.51 5.52 -58.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224061899.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.317 kcal (2) G-P(sol) polarization free energy of solvation -64.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds