Wall clock time and date at job start Tue Mar 31 2020 06:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45202 * 109.47267 * 2 1 4 4 C 1.34227 * 117.00246 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99832 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00112 * 179.97438 * 4 3 2 7 7 C 1.53000 * 109.47079 * 180.02562 * 6 4 3 8 8 H 1.09005 * 109.47048 * 55.00016 * 7 6 4 9 9 C 1.50694 * 109.47174 * 175.00030 * 7 6 4 10 10 H 1.08000 * 120.00563 * 240.00081 * 9 7 6 11 11 C 1.37885 * 119.99902 * 59.99918 * 9 7 6 12 12 N 1.31516 * 119.99913 * 0.02562 * 11 9 7 13 13 Si 1.86805 * 119.99854 * 179.72538 * 11 9 7 14 14 H 1.48504 * 109.47032 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.46816 * 120.00323 * 13 11 9 16 16 H 1.48495 * 109.46630 * 240.00111 * 13 11 9 17 17 O 1.42898 * 109.47217 * 295.00268 * 7 6 4 18 18 C 1.42902 * 114.00306 * 149.99827 * 17 7 6 19 19 H 1.08994 * 112.50486 * 339.68094 * 18 17 7 20 20 C 1.52882 * 113.16590 * 209.76791 * 18 17 7 21 21 C 1.51429 * 84.73196 * 244.77717 * 20 18 17 22 22 C 1.38947 * 145.52806 * 179.97438 * 21 20 18 23 23 C 1.37984 * 120.32525 * 180.02562 * 22 21 20 24 24 C 1.38239 * 120.17443 * 359.97438 * 23 22 21 25 25 C 1.38172 * 119.74765 * 0.02562 * 24 23 22 26 26 C 1.38235 * 120.13108 * 0.02562 * 25 24 23 27 27 H 1.09003 * 109.47215 * 59.99773 * 1 2 3 28 28 H 1.08994 * 109.47284 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47261 * 300.00280 * 1 2 3 30 30 H 1.08992 * 109.47323 * 239.99852 * 2 1 3 31 31 H 1.09005 * 109.47064 * 119.99702 * 2 1 3 32 32 H 1.09001 * 109.46833 * 60.00666 * 6 4 3 33 33 H 1.08997 * 109.46898 * 300.00262 * 6 4 3 34 34 H 0.97001 * 119.99646 * 180.02562 * 12 11 9 35 35 H 1.08998 * 113.99196 * 358.72905 * 20 18 17 36 36 H 1.09005 * 113.98575 * 130.83234 * 20 18 17 37 37 H 1.07997 * 119.83651 * 0.03602 * 22 21 20 38 38 H 1.07992 * 119.91213 * 180.02562 * 23 22 21 39 39 H 1.07996 * 120.12314 * 180.02562 * 24 23 22 40 40 H 1.08003 * 119.94058 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8573 0.0001 8 1 5.7807 2.2493 -0.8415 9 6 6.0244 4.2444 -0.1242 10 1 6.6592 4.4926 -0.9620 11 6 5.7406 5.1969 0.8315 12 7 4.9679 4.8946 1.8520 13 14 6.4605 6.9141 0.6814 14 1 7.2950 6.9956 -0.5443 15 1 5.3593 7.9067 0.5970 16 1 7.2990 7.2050 1.8720 17 8 5.8944 2.2643 1.2214 18 6 7.1176 1.5353 1.1010 19 1 7.3319 1.2469 0.0720 20 6 7.2243 0.3724 2.0878 21 6 8.3772 1.1592 2.6749 22 6 9.3595 1.1915 3.6571 23 6 10.2275 2.2609 3.7395 24 6 10.1259 3.3089 2.8437 25 6 9.1510 3.2820 1.8649 26 6 8.2802 2.2117 1.7820 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.5844 3.4700 0.8896 33 1 3.5852 3.4690 -0.8904 34 1 4.7681 5.5648 2.5241 35 1 6.3675 0.2771 2.7548 36 1 7.5196 -0.5717 1.6299 37 1 9.4441 0.3754 4.3594 38 1 10.9887 2.2789 4.5053 39 1 10.8060 4.1453 2.9087 40 1 9.0691 4.0989 1.1632 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224061900.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:24 Heat of formation + Delta-G solvation = -68.611129 kcal Electronic energy + Delta-G solvation = -23379.076579 eV Core-core repulsion = 19932.538233 eV Total energy + Delta-G solvation = -3446.538346 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.87788 -39.61395 -36.73664 -35.73288 -34.25046 -32.30151 -31.53324 -30.17235 -29.75171 -26.56510 -25.99332 -23.49021 -23.07802 -21.64976 -20.93908 -19.80668 -19.49157 -17.17078 -16.61724 -16.28217 -16.04760 -15.49601 -15.11302 -14.74806 -14.54857 -14.00699 -13.81419 -13.32667 -13.06948 -12.79202 -12.57826 -12.50080 -12.42905 -12.16438 -11.70147 -11.54029 -11.35111 -11.11367 -11.07687 -10.97819 -10.79522 -10.51123 -10.41967 -10.08596 -10.01155 -9.66905 -9.44174 -9.26356 -8.60687 -8.23860 -8.11579 -7.91312 -6.07291 -4.24441 1.89939 1.98554 3.10672 3.23013 3.33492 3.35500 3.40727 4.31908 4.35608 4.84995 4.90481 5.11296 5.14203 5.18544 5.35924 5.43626 5.45700 5.52678 5.53102 5.70644 5.92439 5.96355 5.98471 6.11150 6.16478 6.21222 6.27913 6.44593 6.47337 6.54374 6.67550 6.72433 6.91484 6.97409 7.04361 7.08551 7.43961 7.49993 7.61535 7.80177 8.12231 8.56870 8.64261 8.98089 9.51072 10.94950 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013195 B = 0.006064 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.452749 B = 4616.284898 C = 6357.709620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.368 6.368 4 C 0.459 3.541 5 O -0.516 6.516 6 C -0.103 4.103 7 C 0.229 3.771 8 H 0.017 0.983 9 C -0.556 4.556 10 H 0.061 0.939 11 C 0.090 3.910 12 N -0.856 5.856 13 Si 0.883 3.117 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.281 1.281 17 O -0.336 6.336 18 C 0.152 3.848 19 H 0.069 0.931 20 C -0.073 4.073 21 C -0.132 4.132 22 C -0.109 4.109 23 C -0.130 4.130 24 C -0.129 4.129 25 C -0.074 4.074 26 C -0.108 4.108 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.138 0.862 33 H 0.094 0.906 34 H 0.262 0.738 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.371 -6.933 -0.359 6.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.286 6.286 4 C 0.303 3.697 5 O -0.404 6.404 6 C -0.141 4.141 7 C 0.173 3.827 8 H 0.035 0.965 9 C -0.593 4.593 10 H 0.079 0.921 11 C -0.117 4.117 12 N -0.492 5.492 13 Si 0.710 3.290 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.207 1.207 17 O -0.254 6.254 18 C 0.092 3.908 19 H 0.087 0.913 20 C -0.110 4.110 21 C -0.133 4.133 22 C -0.127 4.127 23 C -0.148 4.148 24 C -0.147 4.147 25 C -0.092 4.092 26 C -0.109 4.109 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.155 0.845 33 H 0.112 0.888 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.104 0.896 37 H 0.126 0.874 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.361 -7.153 -0.013 7.163 hybrid contribution 0.582 0.950 -0.028 1.115 sum 0.220 -6.203 -0.041 6.207 Atomic orbital electron populations 1.21776 0.93441 1.02240 1.03296 1.22825 0.94764 0.81995 1.01917 1.86592 1.26450 1.30800 1.84806 1.24991 0.79269 0.94442 0.70952 1.90550 1.60195 1.43656 1.46011 1.21920 0.97772 0.87735 1.06644 1.19504 0.87983 0.92321 0.82933 0.96517 1.21451 1.32450 0.95637 1.09787 0.92116 1.24942 0.93976 0.98259 0.94521 1.69877 1.34833 1.33694 1.10775 0.86698 0.79359 0.84672 0.78289 1.19612 1.20801 1.20722 1.88101 1.35032 1.67522 1.34774 1.21574 0.84096 0.88602 0.96550 0.91282 1.21946 0.94791 0.96911 0.97340 1.22386 0.96387 0.98434 0.96049 1.20362 0.95525 0.98547 0.98254 1.20777 0.99685 0.94676 0.99697 1.20946 0.99083 0.98576 0.96097 1.20320 0.93627 0.97227 0.98064 1.22596 0.96070 0.93862 0.98358 0.91758 0.90925 0.91631 0.91988 0.91801 0.84469 0.88753 0.92764 0.88659 0.89568 0.87369 0.86670 0.86449 0.86303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.29 37.16 0.38 -1.26 16 2 C 0.06 0.87 6.19 37.16 0.23 1.10 16 3 O -0.37 -6.85 10.22 -39.25 -0.40 -7.25 16 4 C 0.46 9.73 7.84 36.01 0.28 10.01 16 5 O -0.52 -11.67 15.17 -24.05 -0.36 -12.04 16 6 C -0.10 -2.33 5.22 -27.88 -0.15 -2.48 16 7 C 0.23 5.61 1.82 -27.89 -0.05 5.56 16 8 H 0.02 0.41 7.23 -51.93 -0.38 0.03 16 9 C -0.56 -14.42 8.90 -34.44 -0.31 -14.73 16 10 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 11 C 0.09 2.34 5.24 -17.82 -0.09 2.24 16 12 N -0.86 -23.19 10.93 55.43 0.61 -22.58 16 13 Si 0.88 20.31 29.54 -169.99 -5.02 15.29 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 O -0.34 -8.47 8.56 -49.66 -0.43 -8.90 16 18 C 0.15 3.33 4.23 -31.55 -0.13 3.20 16 19 H 0.07 1.47 7.44 -51.93 -0.39 1.08 16 20 C -0.07 -1.38 8.21 -27.59 -0.23 -1.60 16 21 C -0.13 -2.58 7.32 -107.59 -0.79 -3.37 16 22 C -0.11 -1.87 10.05 -39.41 -0.40 -2.26 16 23 C -0.13 -2.11 10.03 -39.67 -0.40 -2.51 16 24 C -0.13 -2.25 10.06 -39.61 -0.40 -2.65 16 25 C -0.07 -1.52 10.04 -39.61 -0.40 -1.92 16 26 C -0.11 -2.34 7.39 -104.55 -0.77 -3.12 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 31 H 0.06 0.95 8.13 -51.93 -0.42 0.52 16 32 H 0.14 3.41 6.22 -51.93 -0.32 3.09 16 33 H 0.09 1.97 8.14 -51.93 -0.42 1.55 16 34 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 36 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 37 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 38 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 39 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 40 H 0.12 2.47 8.06 -52.48 -0.42 2.04 16 LS Contribution 342.91 15.07 5.17 5.17 Total: -1.00 -29.65 342.91 -9.35 -39.00 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -5.70 Total: 5.09 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -3.21 Total: -13.78 kcal Atomic # 7 Polarization: -23.19 SS G_CDS: 0.61 Total: -22.58 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -1.19 Total: -28.18 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.65 -9.35 -39.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224061900.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.607 kcal (2) G-P(sol) polarization free energy of solvation -29.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds