Wall clock time and date at job start Tue Mar 31 2020 06:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45202 * 109.47267 * 2 1 4 4 C 1.34227 * 117.00246 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99832 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00112 * 179.97438 * 4 3 2 7 7 C 1.53000 * 109.47079 * 180.02562 * 6 4 3 8 8 H 1.09005 * 109.47048 * 55.00016 * 7 6 4 9 9 C 1.50694 * 109.47174 * 175.00030 * 7 6 4 10 10 H 1.08000 * 120.00563 * 240.00081 * 9 7 6 11 11 C 1.37885 * 119.99902 * 59.99918 * 9 7 6 12 12 N 1.31516 * 119.99913 * 0.02562 * 11 9 7 13 13 Si 1.86805 * 119.99854 * 179.72538 * 11 9 7 14 14 H 1.48504 * 109.47032 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.46816 * 120.00323 * 13 11 9 16 16 H 1.48495 * 109.46630 * 240.00111 * 13 11 9 17 17 O 1.42898 * 109.47217 * 295.00268 * 7 6 4 18 18 C 1.42902 * 114.00306 * 149.99827 * 17 7 6 19 19 H 1.08994 * 112.50486 * 339.68094 * 18 17 7 20 20 C 1.52882 * 113.16590 * 209.76791 * 18 17 7 21 21 C 1.51429 * 84.73196 * 244.77717 * 20 18 17 22 22 C 1.38947 * 145.52806 * 179.97438 * 21 20 18 23 23 C 1.37984 * 120.32525 * 180.02562 * 22 21 20 24 24 C 1.38239 * 120.17443 * 359.97438 * 23 22 21 25 25 C 1.38172 * 119.74765 * 0.02562 * 24 23 22 26 26 C 1.38235 * 120.13108 * 0.02562 * 25 24 23 27 27 H 1.09003 * 109.47215 * 59.99773 * 1 2 3 28 28 H 1.08994 * 109.47284 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47261 * 300.00280 * 1 2 3 30 30 H 1.08992 * 109.47323 * 239.99852 * 2 1 3 31 31 H 1.09005 * 109.47064 * 119.99702 * 2 1 3 32 32 H 1.09001 * 109.46833 * 60.00666 * 6 4 3 33 33 H 1.08997 * 109.46898 * 300.00262 * 6 4 3 34 34 H 0.97001 * 119.99646 * 180.02562 * 12 11 9 35 35 H 1.08998 * 113.99196 * 358.72905 * 20 18 17 36 36 H 1.09005 * 113.98575 * 130.83234 * 20 18 17 37 37 H 1.07997 * 119.83651 * 0.03602 * 22 21 20 38 38 H 1.07992 * 119.91213 * 180.02562 * 23 22 21 39 39 H 1.07996 * 120.12314 * 180.02562 * 24 23 22 40 40 H 1.08003 * 119.94058 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8573 0.0001 8 1 5.7807 2.2493 -0.8415 9 6 6.0244 4.2444 -0.1242 10 1 6.6592 4.4926 -0.9620 11 6 5.7406 5.1969 0.8315 12 7 4.9679 4.8946 1.8520 13 14 6.4605 6.9141 0.6814 14 1 7.2950 6.9956 -0.5443 15 1 5.3593 7.9067 0.5970 16 1 7.2990 7.2050 1.8720 17 8 5.8944 2.2643 1.2214 18 6 7.1176 1.5353 1.1010 19 1 7.3319 1.2469 0.0720 20 6 7.2243 0.3724 2.0878 21 6 8.3772 1.1592 2.6749 22 6 9.3595 1.1915 3.6571 23 6 10.2275 2.2609 3.7395 24 6 10.1259 3.3089 2.8437 25 6 9.1510 3.2820 1.8649 26 6 8.2802 2.2117 1.7820 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.5844 3.4700 0.8896 33 1 3.5852 3.4690 -0.8904 34 1 4.7681 5.5648 2.5241 35 1 6.3675 0.2771 2.7548 36 1 7.5196 -0.5717 1.6299 37 1 9.4441 0.3754 4.3594 38 1 10.9887 2.2789 4.5053 39 1 10.8060 4.1453 2.9087 40 1 9.0691 4.0989 1.1632 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224061900.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:23 Heat of formation + Delta-G solvation = -82.741005 kcal Electronic energy + Delta-G solvation = -23379.689297 eV Core-core repulsion = 19932.538233 eV Total energy + Delta-G solvation = -3447.151063 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.44335 -41.17803 -38.42402 -37.32247 -35.89768 -34.18976 -32.76583 -31.68703 -31.38990 -28.14873 -27.79285 -25.01972 -24.48858 -23.23604 -22.42999 -21.51222 -20.96944 -18.97567 -18.36507 -17.81191 -17.51311 -17.14811 -16.84783 -16.38425 -16.22585 -15.48640 -15.20350 -14.99995 -14.63739 -14.32757 -14.01330 -13.89232 -13.82017 -13.56028 -13.08773 -12.95469 -12.90170 -12.85624 -12.76621 -12.54084 -12.42080 -12.31817 -12.08696 -11.63456 -11.44715 -11.37568 -11.18874 -11.05916 -10.60581 -9.92604 -9.67382 -9.42968 -8.07658 -6.30694 0.47349 0.54389 1.38119 1.40676 1.43309 1.51951 1.91578 2.42275 2.85920 3.12802 3.35831 3.45250 3.70669 3.99971 4.03998 4.05329 4.18201 4.22848 4.25665 4.38435 4.38582 4.63618 4.66900 4.71777 4.80655 4.86605 4.92595 4.95009 4.95375 5.04534 5.17020 5.17672 5.27134 5.47041 5.54389 5.60388 5.63148 5.78367 5.99149 6.14089 6.18650 6.61437 6.95940 7.07784 7.48343 8.93726 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013195 B = 0.006064 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.452749 B = 4616.284898 C = 6357.709620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 O -0.370 6.370 4 C 0.465 3.535 5 O -0.533 6.533 6 C -0.098 4.098 7 C 0.228 3.772 8 H 0.008 0.992 9 C -0.568 4.568 10 H 0.052 0.948 11 C 0.054 3.946 12 N -0.880 5.880 13 Si 0.938 3.062 14 H -0.268 1.268 15 H -0.274 1.274 16 H -0.285 1.285 17 O -0.358 6.358 18 C 0.133 3.867 19 H 0.062 0.938 20 C -0.060 4.060 21 C -0.140 4.140 22 C -0.108 4.108 23 C -0.120 4.120 24 C -0.128 4.128 25 C -0.102 4.102 26 C -0.152 4.152 27 H 0.069 0.931 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.117 0.883 33 H 0.106 0.894 34 H 0.262 0.738 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.142 0.858 38 H 0.159 0.841 39 H 0.146 0.854 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.229 -7.585 0.794 7.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.024 4.024 3 O -0.288 6.288 4 C 0.311 3.689 5 O -0.423 6.423 6 C -0.136 4.136 7 C 0.172 3.828 8 H 0.026 0.974 9 C -0.605 4.605 10 H 0.070 0.930 11 C -0.150 4.150 12 N -0.516 5.516 13 Si 0.764 3.236 14 H -0.193 1.193 15 H -0.199 1.199 16 H -0.211 1.211 17 O -0.277 6.277 18 C 0.074 3.926 19 H 0.079 0.921 20 C -0.096 4.096 21 C -0.140 4.140 22 C -0.126 4.126 23 C -0.138 4.138 24 C -0.146 4.146 25 C -0.121 4.121 26 C -0.152 4.152 27 H 0.088 0.912 28 H 0.122 0.878 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.135 0.865 33 H 0.124 0.876 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.132 0.868 37 H 0.160 0.840 38 H 0.177 0.823 39 H 0.164 0.836 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.221 -7.809 1.128 7.893 hybrid contribution 0.417 1.077 -0.385 1.217 sum 0.638 -6.733 0.743 6.803 Atomic orbital electron populations 1.21806 0.90174 1.04377 1.03569 1.23256 0.97288 0.79788 1.02111 1.86555 1.24565 1.33515 1.84154 1.24514 0.80197 0.93502 0.70719 1.90532 1.60908 1.43951 1.46914 1.21684 0.96859 0.88910 1.06165 1.19449 0.89079 0.91537 0.82715 0.97411 1.21605 1.32535 0.96696 1.09705 0.92991 1.25490 0.94189 1.01185 0.94153 1.70000 1.35756 1.34539 1.11287 0.85833 0.78792 0.81030 0.77985 1.19272 1.19899 1.21076 1.88037 1.36591 1.68159 1.34894 1.21896 0.83513 0.90044 0.97168 0.92063 1.21864 0.94535 0.97013 0.96229 1.22485 0.97253 0.97670 0.96602 1.20809 0.94340 0.99781 0.97662 1.21295 0.99690 0.93219 0.99550 1.21311 0.98277 0.99983 0.95048 1.20460 0.95271 0.96895 0.99437 1.22675 0.96927 0.95620 0.99999 0.91170 0.87799 0.91673 0.91401 0.92108 0.86548 0.87594 0.92901 0.89489 0.86775 0.83975 0.82314 0.83607 0.88156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 10.29 71.98 0.74 -2.06 16 2 C 0.05 1.39 6.19 71.98 0.45 1.84 16 3 O -0.37 -13.75 10.22 -51.39 -0.53 -14.28 16 4 C 0.47 20.17 7.84 71.24 0.56 20.73 16 5 O -0.53 -24.64 15.17 27.03 0.41 -24.23 16 6 C -0.10 -4.62 5.22 29.85 0.16 -4.46 16 7 C 0.23 11.72 1.82 29.85 0.05 11.77 16 8 H 0.01 0.41 7.23 -2.38 -0.02 0.39 16 9 C -0.57 -30.60 8.90 25.60 0.23 -30.38 16 10 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 11 C 0.05 2.88 5.24 84.66 0.44 3.33 16 12 N -0.88 -48.88 10.93 21.45 0.23 -48.64 16 13 Si 0.94 42.40 29.54 68.60 2.03 44.42 16 14 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 15 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 16 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 17 O -0.36 -18.81 8.56 -135.18 -1.16 -19.97 16 18 C 0.13 6.07 4.23 27.47 0.12 6.19 16 19 H 0.06 2.77 7.44 -2.39 -0.02 2.76 16 20 C -0.06 -2.25 8.21 30.04 0.25 -2.01 16 21 C -0.14 -5.35 7.32 -21.79 -0.16 -5.51 16 22 C -0.11 -3.39 10.05 22.38 0.22 -3.16 16 23 C -0.12 -3.45 10.03 22.21 0.22 -3.23 16 24 C -0.13 -4.23 10.06 22.25 0.22 -4.01 16 25 C -0.10 -4.27 10.04 22.25 0.22 -4.04 16 26 C -0.15 -6.71 7.39 -19.82 -0.15 -6.86 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 28 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 1.85 8.13 -2.39 -0.02 1.83 16 31 H 0.06 1.76 8.13 -2.38 -0.02 1.74 16 32 H 0.12 6.03 6.22 -2.39 -0.01 6.01 16 33 H 0.11 4.57 8.14 -2.39 -0.02 4.55 16 34 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 35 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 36 H 0.11 3.55 8.14 -2.38 -0.02 3.53 16 37 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 38 H 0.16 3.21 8.06 -2.91 -0.02 3.18 16 39 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 40 H 0.10 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -65.84 342.91 5.59 -60.24 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 1.03 Total: 24.31 kcal Atomic # 6 Polarization: -25.44 SS G_CDS: 3.58 Total: -21.86 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: 0.23 Total: -48.64 kcal Atomic # 8 Polarization: -57.20 SS G_CDS: -1.27 Total: -58.48 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -65.84 5.59 -60.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224061900.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.496 kcal (2) G-P(sol) polarization free energy of solvation -65.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds