Wall clock time and date at job start Tue Mar 31 2020 06:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34804 * 116.99538 * 180.02562 * 3 2 1 5 5 O 1.21533 * 120.00206 * 359.97438 * 4 3 2 6 6 C 1.46955 * 119.99661 * 180.27086 * 4 3 2 7 7 C 1.33084 * 120.00048 * 179.72130 * 6 4 3 8 8 C 1.50693 * 119.99835 * 180.02562 * 7 6 4 9 9 O 1.42904 * 109.47338 * 135.00282 * 8 7 6 10 10 C 1.42894 * 114.00291 * 179.97438 * 9 8 7 11 11 H 1.09001 * 109.47020 * 330.00132 * 10 9 8 12 12 C 1.50699 * 109.46989 * 89.99739 * 10 9 8 13 13 H 1.08005 * 119.99897 * 239.99926 * 12 10 9 14 14 C 1.37878 * 120.00202 * 60.00198 * 12 10 9 15 15 N 1.31515 * 119.99445 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 120.00130 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47174 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.46849 * 119.99902 * 16 14 12 19 19 H 1.48507 * 109.46982 * 239.99964 * 16 14 12 20 20 C 1.50704 * 109.47131 * 209.99899 * 10 9 8 21 21 C 1.38235 * 119.99774 * 324.72546 * 20 10 9 22 22 C 1.38230 * 119.99749 * 179.81143 * 21 20 10 23 23 C 1.38245 * 119.99874 * 0.39604 * 22 21 20 24 24 C 1.38232 * 119.99913 * 359.85887 * 23 22 21 25 25 C 1.38228 * 120.00111 * 359.95270 * 24 23 22 26 26 H 1.09002 * 109.47191 * 60.00100 * 1 2 3 27 27 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 29 29 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 30 30 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 31 31 H 1.08001 * 119.99739 * 359.72556 * 6 4 3 32 32 H 1.08002 * 119.99683 * 0.02562 * 7 6 4 33 33 H 1.09008 * 109.46982 * 254.99639 * 8 7 6 34 34 H 1.08997 * 109.47657 * 15.00113 * 8 7 6 35 35 H 0.97008 * 119.99401 * 179.97438 * 15 14 12 36 36 H 1.07998 * 119.99740 * 359.97438 * 21 20 10 37 37 H 1.08003 * 120.00423 * 180.23160 * 22 21 20 38 38 H 1.07996 * 119.99440 * 179.83411 * 23 22 21 39 39 H 1.08002 * 119.99327 * 179.97438 * 24 23 22 40 40 H 1.08003 * 119.99843 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3503 1.5456 -0.0005 5 8 4.0906 0.5817 -0.0005 6 6 3.9120 2.9035 0.0054 7 6 5.2313 3.0779 0.0105 8 6 5.8073 4.4704 0.0172 9 8 6.8665 4.5433 0.9737 10 6 7.4847 5.8287 1.0596 11 1 7.4282 6.3245 0.0905 12 6 6.7704 6.6617 2.0925 13 1 6.3062 7.5942 1.8072 14 6 6.7093 6.2333 3.4016 15 7 7.2741 5.0975 3.7488 16 14 5.8244 7.2662 4.6820 17 1 5.2780 8.4889 4.0403 18 1 4.7124 6.4781 5.2714 19 1 6.7789 7.6526 5.7521 20 6 8.9293 5.6658 1.4571 21 6 9.2957 4.6626 2.3348 22 6 10.6212 4.5108 2.6963 23 6 11.5792 5.3673 2.1865 24 6 11.2119 6.3737 1.3129 25 6 9.8870 6.5231 0.9484 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5137 0.8901 31 1 3.2541 3.7600 0.0058 32 1 5.8892 2.2214 0.0098 33 1 6.1954 4.7079 -0.9734 34 1 5.0280 5.1847 0.2830 35 1 7.2315 4.7963 4.6699 36 1 8.5467 3.9960 2.7359 37 1 10.9081 3.7247 3.3791 38 1 12.6144 5.2502 2.4711 39 1 11.9604 7.0430 0.9150 40 1 9.6000 7.3097 0.2662 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224343927.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:07 Heat of formation + Delta-G solvation = -85.923375 kcal Electronic energy + Delta-G solvation = -22219.422770 eV Core-core repulsion = 18772.133708 eV Total energy + Delta-G solvation = -3447.289061 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.17791 -38.30740 -36.86286 -36.37930 -33.79476 -32.51159 -31.73674 -30.41573 -29.62519 -27.16285 -26.28625 -23.59960 -22.82899 -21.80838 -21.27932 -20.19758 -19.22880 -17.78809 -16.83723 -16.47016 -16.41984 -15.86328 -15.15930 -14.70004 -14.27216 -14.16209 -14.02823 -13.56412 -13.46561 -13.15968 -12.89628 -12.47004 -12.32490 -12.19604 -12.04020 -11.77190 -11.58462 -11.49661 -11.02564 -10.92007 -10.74054 -10.55778 -10.42888 -10.27868 -10.14151 -9.91405 -9.37495 -9.19816 -8.78017 -8.19536 -7.75446 -7.44827 -5.98851 -4.33339 1.35353 2.47522 2.63331 2.76609 3.18083 3.22352 3.30894 3.32846 4.30327 4.66237 4.79533 4.85192 4.99434 5.08246 5.13382 5.25236 5.37819 5.53586 5.61467 5.66800 5.80110 5.82408 5.86806 5.95680 6.06711 6.19413 6.36140 6.38446 6.55700 6.57315 6.70686 6.81162 6.89414 7.11508 7.29755 7.51169 7.61579 7.83143 7.91991 8.00687 8.04864 8.30809 8.45667 8.86554 9.42758 10.85149 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016065 B = 0.003793 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.509446 B = 7380.132083 C = 8373.447074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.357 6.357 4 C 0.502 3.498 5 O -0.519 6.519 6 C -0.217 4.217 7 C -0.009 4.009 8 C 0.085 3.915 9 O -0.364 6.364 10 C 0.245 3.755 11 H 0.020 0.980 12 C -0.546 4.546 13 H 0.062 0.938 14 C 0.085 3.915 15 N -0.845 5.845 16 Si 0.890 3.110 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.282 1.282 20 C -0.043 4.043 21 C -0.044 4.044 22 C -0.154 4.154 23 C -0.146 4.146 24 C -0.150 4.150 25 C -0.129 4.129 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.138 0.862 32 H 0.129 0.871 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.262 0.738 36 H 0.165 0.835 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.124 -5.144 -6.668 10.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.275 6.275 4 C 0.349 3.651 5 O -0.409 6.409 6 C -0.236 4.236 7 C -0.028 4.028 8 C 0.008 3.992 9 O -0.283 6.283 10 C 0.190 3.810 11 H 0.038 0.962 12 C -0.583 4.583 13 H 0.080 0.920 14 C -0.121 4.121 15 N -0.480 5.480 16 Si 0.718 3.282 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.208 1.208 20 C -0.043 4.043 21 C -0.063 4.063 22 C -0.172 4.172 23 C -0.164 4.164 24 C -0.169 4.169 25 C -0.147 4.147 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.156 0.844 32 H 0.147 0.853 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.182 0.818 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.868 -5.723 -6.389 10.393 hybrid contribution -0.431 0.753 0.846 1.212 sum -6.299 -4.969 -5.544 9.752 Atomic orbital electron populations 1.21798 0.92789 1.02772 1.03541 1.22975 0.95199 0.80574 1.02524 1.86600 1.24453 1.31866 1.84531 1.21600 0.80226 0.90929 0.72363 1.90836 1.60315 1.43047 1.46740 1.21709 0.96135 0.93217 1.12512 1.23899 0.94690 1.00080 0.84142 1.21251 0.92873 0.91814 0.93242 1.88075 1.47570 1.35054 1.57648 1.18600 0.86997 0.81335 0.94082 0.96187 1.21466 1.35720 1.07226 0.93895 0.91983 1.24990 0.94132 0.94681 0.98309 1.69828 1.40514 1.19830 1.17842 0.86574 0.79638 0.80466 0.81555 1.19667 1.20724 1.20802 1.19972 0.94307 0.94032 0.96020 1.21882 0.94439 0.97963 0.92039 1.21166 0.94344 0.99997 1.01727 1.20828 0.98163 0.97447 0.99964 1.20698 0.95720 0.99527 1.00913 1.20780 0.92835 0.99717 1.01405 0.91527 0.90396 0.91433 0.91383 0.91284 0.84374 0.85285 0.92925 0.92217 0.92729 0.81823 0.88021 0.88280 0.88006 0.87802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.29 37.15 0.38 -0.82 16 2 C 0.06 0.68 6.20 37.15 0.23 0.91 16 3 O -0.36 -5.05 10.23 -40.78 -0.42 -5.47 16 4 C 0.50 8.10 7.91 34.26 0.27 8.38 16 5 O -0.52 -9.60 16.01 -19.29 -0.31 -9.91 16 6 C -0.22 -3.35 9.75 -37.85 -0.37 -3.72 16 7 C -0.01 -0.16 9.47 -36.10 -0.34 -0.50 16 8 C 0.09 1.56 6.16 36.00 0.22 1.79 16 9 O -0.36 -8.41 8.52 -35.23 -0.30 -8.71 16 10 C 0.25 5.82 2.59 -29.03 -0.08 5.75 16 11 H 0.02 0.44 7.70 -51.93 -0.40 0.04 16 12 C -0.55 -14.08 8.89 -34.44 -0.31 -14.38 16 13 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 14 C 0.09 2.21 5.24 -17.82 -0.09 2.12 16 15 N -0.85 -22.33 8.50 55.43 0.47 -21.86 16 16 Si 0.89 20.40 29.54 -169.99 -5.02 15.37 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 C -0.04 -1.01 4.80 -104.62 -0.50 -1.51 16 21 C -0.04 -1.05 7.46 -39.59 -0.30 -1.35 16 22 C -0.15 -3.24 10.05 -39.58 -0.40 -3.64 16 23 C -0.15 -2.82 10.05 -39.58 -0.40 -3.22 16 24 C -0.15 -2.91 10.05 -39.59 -0.40 -3.31 16 25 C -0.13 -2.73 9.68 -39.59 -0.38 -3.12 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.14 1.87 7.93 -52.49 -0.42 1.45 16 32 H 0.13 2.26 7.49 -52.49 -0.39 1.87 16 33 H 0.05 0.85 8.09 -51.92 -0.42 0.43 16 34 H 0.06 1.09 7.89 -51.93 -0.41 0.68 16 35 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 36 H 0.16 4.21 5.50 -52.49 -0.29 3.93 16 37 H 0.10 1.92 8.06 -52.48 -0.42 1.50 16 38 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.10 1.99 8.06 -52.48 -0.42 1.57 16 LS Contribution 346.34 15.07 5.22 5.22 Total: -1.00 -29.11 346.34 -8.49 -37.60 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -5.68 Total: 4.38 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -2.45 Total: -16.62 kcal Atomic # 7 Polarization: -22.33 SS G_CDS: 0.47 Total: -21.86 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -1.03 Total: -24.09 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.11 -8.49 -37.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224343927.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.324 kcal (2) G-P(sol) polarization free energy of solvation -29.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds