Wall clock time and date at job start Tue Mar 31 2020 06:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34804 * 116.99538 * 180.02562 * 3 2 1 5 5 O 1.21533 * 120.00206 * 359.97438 * 4 3 2 6 6 C 1.46955 * 119.99661 * 180.27086 * 4 3 2 7 7 C 1.33084 * 120.00048 * 179.72130 * 6 4 3 8 8 C 1.50693 * 119.99835 * 180.02562 * 7 6 4 9 9 O 1.42904 * 109.47338 * 135.00282 * 8 7 6 10 10 C 1.42894 * 114.00291 * 179.97438 * 9 8 7 11 11 H 1.09001 * 109.47020 * 330.00132 * 10 9 8 12 12 C 1.50699 * 109.46989 * 89.99739 * 10 9 8 13 13 H 1.08005 * 119.99897 * 239.99926 * 12 10 9 14 14 C 1.37878 * 120.00202 * 60.00198 * 12 10 9 15 15 N 1.31515 * 119.99445 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 120.00130 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47174 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.46849 * 119.99902 * 16 14 12 19 19 H 1.48507 * 109.46982 * 239.99964 * 16 14 12 20 20 C 1.50704 * 109.47131 * 209.99899 * 10 9 8 21 21 C 1.38235 * 119.99774 * 324.72546 * 20 10 9 22 22 C 1.38230 * 119.99749 * 179.81143 * 21 20 10 23 23 C 1.38245 * 119.99874 * 0.39604 * 22 21 20 24 24 C 1.38232 * 119.99913 * 359.85887 * 23 22 21 25 25 C 1.38228 * 120.00111 * 359.95270 * 24 23 22 26 26 H 1.09002 * 109.47191 * 60.00100 * 1 2 3 27 27 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 29 29 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 30 30 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 31 31 H 1.08001 * 119.99739 * 359.72556 * 6 4 3 32 32 H 1.08002 * 119.99683 * 0.02562 * 7 6 4 33 33 H 1.09008 * 109.46982 * 254.99639 * 8 7 6 34 34 H 1.08997 * 109.47657 * 15.00113 * 8 7 6 35 35 H 0.97008 * 119.99401 * 179.97438 * 15 14 12 36 36 H 1.07998 * 119.99740 * 359.97438 * 21 20 10 37 37 H 1.08003 * 120.00423 * 180.23160 * 22 21 20 38 38 H 1.07996 * 119.99440 * 179.83411 * 23 22 21 39 39 H 1.08002 * 119.99327 * 179.97438 * 24 23 22 40 40 H 1.08003 * 119.99843 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3503 1.5456 -0.0005 5 8 4.0906 0.5817 -0.0005 6 6 3.9120 2.9035 0.0054 7 6 5.2313 3.0779 0.0105 8 6 5.8073 4.4704 0.0172 9 8 6.8665 4.5433 0.9737 10 6 7.4847 5.8287 1.0596 11 1 7.4282 6.3245 0.0905 12 6 6.7704 6.6617 2.0925 13 1 6.3062 7.5942 1.8072 14 6 6.7093 6.2333 3.4016 15 7 7.2741 5.0975 3.7488 16 14 5.8244 7.2662 4.6820 17 1 5.2780 8.4889 4.0403 18 1 4.7124 6.4781 5.2714 19 1 6.7789 7.6526 5.7521 20 6 8.9293 5.6658 1.4571 21 6 9.2957 4.6626 2.3348 22 6 10.6212 4.5108 2.6963 23 6 11.5792 5.3673 2.1865 24 6 11.2119 6.3737 1.3129 25 6 9.8870 6.5231 0.9484 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5137 0.8901 31 1 3.2541 3.7600 0.0058 32 1 5.8892 2.2214 0.0098 33 1 6.1954 4.7079 -0.9734 34 1 5.0280 5.1847 0.2830 35 1 7.2315 4.7963 4.6699 36 1 8.5467 3.9960 2.7359 37 1 10.9081 3.7247 3.3791 38 1 12.6144 5.2502 2.4711 39 1 11.9604 7.0430 0.9150 40 1 9.6000 7.3097 0.2662 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224343927.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:06 Heat of formation + Delta-G solvation = -99.698931 kcal Electronic energy + Delta-G solvation = -22220.020123 eV Core-core repulsion = 18772.133708 eV Total energy + Delta-G solvation = -3447.886414 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.42365 -39.95533 -38.33996 -37.73537 -35.34972 -34.21959 -32.61722 -32.06578 -31.24870 -28.81592 -27.84981 -24.86440 -24.36933 -23.08544 -22.77656 -21.86347 -20.55359 -19.06464 -18.65786 -17.74712 -17.57478 -17.43996 -16.88272 -16.42625 -15.84998 -15.65196 -15.11770 -15.03932 -14.96488 -14.57425 -14.14072 -13.86770 -13.80173 -13.53087 -13.28058 -13.17145 -12.96734 -12.83795 -12.62670 -12.53688 -12.44095 -12.02611 -11.84994 -11.65002 -11.56802 -11.53259 -11.07439 -10.71878 -10.64100 -9.87918 -9.39277 -9.14610 -7.88833 -6.31384 0.02349 0.84238 1.01685 1.39586 1.43471 1.51644 1.62953 1.89674 2.41371 3.09624 3.34189 3.45328 3.81495 3.99158 4.06573 4.07498 4.23250 4.34126 4.37703 4.40018 4.45738 4.60236 4.68438 4.73226 4.78312 4.91447 4.92135 5.09668 5.14555 5.20263 5.24089 5.36145 5.39501 5.49400 5.65436 5.70986 5.90307 6.06686 6.18442 6.36746 6.55430 6.65499 6.66873 7.07885 7.47731 8.90706 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016065 B = 0.003793 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.509446 B = 7380.132083 C = 8373.447074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.050 3.950 3 O -0.357 6.357 4 C 0.502 3.498 5 O -0.547 6.547 6 C -0.200 4.200 7 C -0.022 4.022 8 C 0.084 3.916 9 O -0.388 6.388 10 C 0.244 3.756 11 H 0.028 0.972 12 C -0.563 4.563 13 H 0.057 0.943 14 C 0.045 3.955 15 N -0.861 5.861 16 Si 0.942 3.058 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.285 1.285 20 C -0.070 4.070 21 C -0.068 4.068 22 C -0.164 4.164 23 C -0.142 4.142 24 C -0.145 4.145 25 C -0.140 4.140 26 H 0.071 0.929 27 H 0.103 0.897 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.161 0.839 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.258 0.742 36 H 0.136 0.864 37 H 0.116 0.884 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.077 -4.536 -7.092 10.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 O -0.273 6.273 4 C 0.350 3.650 5 O -0.440 6.440 6 C -0.219 4.219 7 C -0.041 4.041 8 C 0.007 3.993 9 O -0.308 6.308 10 C 0.188 3.812 11 H 0.046 0.954 12 C -0.600 4.600 13 H 0.075 0.925 14 C -0.159 4.159 15 N -0.497 5.497 16 Si 0.768 3.232 17 H -0.191 1.191 18 H -0.207 1.207 19 H -0.211 1.211 20 C -0.071 4.071 21 C -0.087 4.087 22 C -0.182 4.182 23 C -0.160 4.160 24 C -0.163 4.163 25 C -0.158 4.158 26 H 0.090 0.910 27 H 0.121 0.879 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.179 0.821 32 H 0.135 0.865 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.154 0.846 37 H 0.134 0.866 38 H 0.154 0.846 39 H 0.157 0.843 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.843 -5.112 -6.827 10.338 hybrid contribution -0.469 0.496 0.912 1.140 sum -6.312 -4.616 -5.915 9.805 Atomic orbital electron populations 1.21826 0.90026 1.04523 1.03784 1.23349 0.97345 0.79027 1.02599 1.86598 1.23018 1.33894 1.83834 1.21697 0.80843 0.90714 0.71727 1.90822 1.61142 1.43961 1.48077 1.21886 0.95863 0.93809 1.10335 1.23675 0.95186 0.98999 0.86233 1.21394 0.91903 0.92571 0.93411 1.88019 1.48820 1.34684 1.59281 1.18574 0.87358 0.81382 0.93864 0.95434 1.21704 1.36190 1.07353 0.94760 0.92517 1.25589 0.94881 0.95616 0.99816 1.70043 1.41284 1.20702 1.17626 0.85771 0.78538 0.79363 0.79495 1.19135 1.20739 1.21101 1.20144 0.94813 0.95093 0.97044 1.21687 0.95220 0.98394 0.93393 1.21392 0.93765 1.00990 1.02080 1.21239 0.99518 0.96342 0.98880 1.21145 0.95670 0.99588 0.99928 1.21060 0.93449 0.99634 1.01681 0.90957 0.87875 0.91476 0.90966 0.91683 0.82113 0.86466 0.90804 0.92248 0.93210 0.84649 0.86552 0.84621 0.84259 0.86265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 10.29 71.98 0.74 -1.25 16 2 C 0.05 1.06 6.20 71.98 0.45 1.51 16 3 O -0.36 -9.77 10.23 -57.16 -0.58 -10.36 16 4 C 0.50 16.12 7.91 70.11 0.55 16.67 16 5 O -0.55 -20.52 16.01 19.73 0.32 -20.20 16 6 C -0.20 -6.11 9.75 23.40 0.23 -5.88 16 7 C -0.02 -0.76 9.47 24.53 0.23 -0.53 16 8 C 0.08 3.10 6.16 71.23 0.44 3.54 16 9 O -0.39 -18.46 8.52 -148.98 -1.27 -19.73 16 10 C 0.24 11.78 2.59 29.10 0.08 11.85 16 11 H 0.03 1.23 7.70 -2.39 -0.02 1.22 16 12 C -0.56 -29.39 8.89 25.60 0.23 -29.16 16 13 H 0.06 2.92 7.81 -2.91 -0.02 2.89 16 14 C 0.05 2.37 5.24 84.65 0.44 2.82 16 15 N -0.86 -46.71 8.50 21.45 0.18 -46.53 16 16 Si 0.94 42.20 29.54 68.60 2.03 44.23 16 17 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 20 C -0.07 -3.35 4.80 -19.86 -0.10 -3.44 16 21 C -0.07 -3.28 7.46 22.27 0.17 -3.12 16 22 C -0.16 -6.79 10.05 22.27 0.22 -6.57 16 23 C -0.14 -5.10 10.05 22.27 0.22 -4.88 16 24 C -0.15 -5.20 10.05 22.27 0.22 -4.97 16 25 C -0.14 -5.75 9.68 22.27 0.22 -5.54 16 26 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.10 0.92 8.14 -2.39 -0.02 0.91 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.16 4.12 7.93 -2.91 -0.02 4.10 16 32 H 0.12 4.29 7.49 -2.91 -0.02 4.27 16 33 H 0.07 2.38 8.09 -2.38 -0.02 2.36 16 34 H 0.06 2.18 7.89 -2.39 -0.02 2.16 16 35 H 0.26 13.55 8.31 -92.70 -0.77 12.78 16 36 H 0.14 7.30 5.50 -2.91 -0.02 7.29 16 37 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 38 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 39 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 40 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -63.29 346.34 6.03 -57.25 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 1.02 Total: 24.29 kcal Atomic # 6 Polarization: -33.29 SS G_CDS: 4.34 Total: -28.94 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.18 Total: -46.53 kcal Atomic # 8 Polarization: -48.75 SS G_CDS: -1.54 Total: -50.29 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -63.29 6.03 -57.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224343927.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.448 kcal (2) G-P(sol) polarization free energy of solvation -63.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds