Wall clock time and date at job start Tue Mar 31 2020 06:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33081 * 1 3 3 C 1.50698 * 120.00368 * 2 1 4 4 O 1.42904 * 109.46900 * 0.02562 * 3 2 1 5 5 C 1.42899 * 113.99768 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47599 * 29.99507 * 5 4 3 7 7 C 1.50702 * 109.46460 * 269.99500 * 5 4 3 8 8 H 1.07993 * 120.00661 * 325.09659 * 7 5 4 9 9 C 1.37879 * 119.99512 * 145.09895 * 7 5 4 10 10 N 1.31509 * 120.00503 * 6.09739 * 9 7 5 11 11 Si 1.86809 * 119.99752 * 186.09863 * 9 7 5 12 12 H 1.48498 * 109.46952 * 269.99757 * 11 9 7 13 13 H 1.48494 * 109.47229 * 29.99834 * 11 9 7 14 14 H 1.48503 * 109.46935 * 150.00148 * 11 9 7 15 15 C 1.50703 * 109.47129 * 149.99987 * 5 4 3 16 16 C 1.38231 * 119.99765 * 36.33174 * 15 5 4 17 17 C 1.38242 * 119.99390 * 179.79110 * 16 15 5 18 18 C 1.38226 * 120.00302 * 0.43990 * 17 16 15 19 19 C 1.38239 * 119.99725 * 359.81010 * 18 17 16 20 20 C 1.38227 * 120.00172 * 359.97438 * 19 18 17 21 21 C 1.46958 * 119.99614 * 180.02562 * 2 1 3 22 22 O 1.21533 * 120.00058 * 359.97438 * 21 2 1 23 23 O 1.34797 * 119.99497 * 179.97438 * 21 2 1 24 24 C 1.45207 * 116.99569 * 180.02562 * 23 21 2 25 25 C 1.52996 * 109.46950 * 180.02562 * 24 23 21 26 26 H 1.07997 * 120.00291 * 180.02562 * 1 2 3 27 27 H 1.08000 * 120.00149 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47005 * 240.00450 * 3 2 1 29 29 H 1.08996 * 109.46935 * 120.00334 * 3 2 1 30 30 H 0.97007 * 120.00150 * 355.51099 * 10 9 7 31 31 H 1.07999 * 120.00678 * 359.97438 * 16 15 5 32 32 H 1.08000 * 119.99535 * 180.27204 * 17 16 15 33 33 H 1.08000 * 120.00335 * 179.84081 * 18 17 16 34 34 H 1.08003 * 119.99935 * 180.02562 * 19 18 17 35 35 H 1.08006 * 119.99839 * 179.97438 * 20 19 18 36 36 H 1.09001 * 109.46992 * 300.00217 * 24 23 21 37 37 H 1.08997 * 109.46989 * 60.00307 * 24 23 21 38 38 H 1.09007 * 109.47176 * 60.00370 * 25 24 23 39 39 H 1.08997 * 109.47586 * 179.97438 * 25 24 23 40 40 H 1.08996 * 109.47562 * 300.00212 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3308 0.0000 0.0000 3 6 2.0844 1.3050 0.0000 4 8 1.1558 2.3912 0.0006 5 6 1.7704 3.6813 0.0001 6 1 2.7298 3.6266 -0.5144 7 6 1.9873 4.1348 1.4208 8 1 1.2711 3.8747 2.1860 9 6 3.1003 4.8819 1.7435 10 7 3.9091 5.3006 0.7948 11 14 3.4594 5.2995 3.5286 12 1 2.8021 6.5843 3.8783 13 1 2.9352 4.2209 4.4044 14 1 4.9264 5.4252 3.7221 15 6 0.8751 4.6640 -0.7098 16 6 -0.4977 4.5661 -0.5811 17 6 -1.3188 5.4702 -1.2288 18 6 -0.7673 6.4665 -2.0123 19 6 0.6054 6.5612 -2.1451 20 6 1.4266 5.6599 -1.4940 21 6 2.0655 -1.2727 -0.0006 22 8 1.4578 -2.3252 -0.0006 23 8 3.4135 -1.2727 -0.0011 24 6 4.0726 -2.5666 -0.0022 25 6 5.5894 -2.3661 -0.0020 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 0.0004 28 1 2.7110 1.3628 -0.8900 29 1 2.7111 1.3627 0.8899 30 1 3.7595 5.0298 -0.1246 31 1 -0.9288 3.7852 0.0278 32 1 -2.3912 5.3965 -1.1247 33 1 -1.4089 7.1713 -2.5204 34 1 1.0363 7.3398 -2.7571 35 1 2.4991 5.7336 -1.5981 36 1 3.7800 -3.1241 0.8875 37 1 3.7794 -3.1229 -0.8925 38 1 5.8823 -1.8099 0.8885 39 1 6.0843 -3.3373 -0.0024 40 1 5.8824 -1.8083 -0.8914 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224357083.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:14 Heat of formation + Delta-G solvation = -96.459834 kcal Electronic energy + Delta-G solvation = -22669.938750 eV Core-core repulsion = 19222.192794 eV Total energy + Delta-G solvation = -3447.745956 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.31405 -38.66041 -37.10120 -36.55922 -34.00920 -32.67126 -31.63745 -30.49214 -30.11892 -26.54238 -25.82355 -24.31157 -23.10765 -22.34671 -21.69666 -20.43639 -19.31808 -17.40300 -17.28381 -16.55505 -16.50437 -15.83701 -15.46287 -14.57174 -14.55776 -14.02137 -13.89761 -13.82972 -13.75946 -13.34254 -12.92292 -12.80936 -12.56248 -12.37834 -12.00569 -11.95287 -11.78750 -11.62243 -11.17515 -10.89858 -10.66387 -10.55628 -10.48164 -10.30740 -10.23764 -9.96866 -9.75270 -9.15566 -8.62641 -8.43395 -8.17512 -7.68754 -6.55473 -4.30617 1.32872 2.15347 2.18163 2.75245 3.08445 3.36158 3.39038 3.54803 4.27233 4.39485 4.63967 4.84300 4.87483 4.99164 5.16318 5.17962 5.26851 5.55901 5.56576 5.62231 5.68772 5.73457 5.88086 5.95774 5.96158 6.10582 6.20031 6.29837 6.35975 6.39482 6.53623 6.57473 6.66278 6.82348 6.83779 7.18679 7.28644 7.49318 7.75512 7.81579 7.85841 8.00855 8.47332 8.63121 9.41304 10.79248 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.012249 B = 0.004973 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.348143 B = 5628.942566 C = 7001.364324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.168 4.168 3 C 0.119 3.881 4 O -0.394 6.394 5 C 0.230 3.770 6 H 0.036 0.964 7 C -0.602 4.602 8 H 0.061 0.939 9 C 0.028 3.972 10 N -0.898 5.898 11 Si 1.070 2.930 12 H -0.286 1.286 13 H -0.286 1.286 14 H -0.282 1.282 15 C -0.033 4.033 16 C -0.107 4.107 17 C -0.130 4.130 18 C -0.150 4.150 19 C -0.124 4.124 20 C -0.119 4.119 21 C 0.512 3.488 22 O -0.519 6.519 23 O -0.349 6.349 24 C 0.062 3.938 25 C -0.154 4.154 26 H 0.110 0.890 27 H 0.138 0.862 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.270 0.730 31 H 0.117 0.883 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.946 -8.504 -3.667 9.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.169 4.169 3 C 0.042 3.958 4 O -0.314 6.314 5 C 0.174 3.826 6 H 0.054 0.946 7 C -0.640 4.640 8 H 0.080 0.920 9 C -0.178 4.178 10 N -0.534 5.534 11 Si 0.898 3.102 12 H -0.212 1.212 13 H -0.212 1.212 14 H -0.208 1.208 15 C -0.034 4.034 16 C -0.125 4.125 17 C -0.148 4.148 18 C -0.168 4.168 19 C -0.142 4.142 20 C -0.137 4.137 21 C 0.359 3.641 22 O -0.409 6.409 23 O -0.266 6.266 24 C -0.012 4.012 25 C -0.211 4.211 26 H 0.128 0.872 27 H 0.155 0.845 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.135 0.865 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.135 0.865 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.221 -8.026 -2.691 8.552 hybrid contribution -0.787 -0.808 -0.905 1.446 sum -2.008 -8.834 -3.595 9.747 Atomic orbital electron populations 1.24757 0.94260 1.03784 0.87563 1.20895 0.95058 0.91560 1.09388 1.20754 0.90817 0.83374 1.00889 1.87608 1.33709 1.14678 1.95455 1.18854 0.89988 0.78214 0.95542 0.94600 1.22271 1.10128 1.38549 0.93021 0.92044 1.25914 0.92555 0.93154 1.06188 1.70843 1.40153 1.40231 1.02180 0.83520 0.76497 0.76433 0.73773 1.21216 1.21161 1.20765 1.20372 0.94391 0.96711 0.91912 1.20866 0.93340 0.98813 0.99488 1.21010 0.98871 0.96153 0.98767 1.20859 0.94945 0.99546 1.01468 1.20952 0.93708 0.99046 1.00509 1.20955 0.99716 0.95788 0.97244 1.21336 0.80827 0.89851 0.72099 1.90814 1.69467 1.33535 1.47119 1.86671 1.20824 1.35136 1.83944 1.23012 0.93065 0.82746 1.02371 1.21809 0.92406 1.02904 1.03941 0.87191 0.84456 0.93079 0.91397 0.91793 0.86485 0.87285 0.87403 0.87159 0.86509 0.91303 0.91373 0.91202 0.90377 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 13.67 28.94 0.40 -0.61 16 2 C -0.17 -2.83 6.00 -102.89 -0.62 -3.45 16 3 C 0.12 2.29 5.78 36.00 0.21 2.50 16 4 O -0.39 -8.52 7.58 -35.23 -0.27 -8.79 16 5 C 0.23 5.52 2.19 -29.03 -0.06 5.46 16 6 H 0.04 0.91 5.99 -51.93 -0.31 0.60 16 7 C -0.60 -16.00 8.62 -34.44 -0.30 -16.30 16 8 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 9 C 0.03 0.75 5.45 -17.82 -0.10 0.65 16 10 N -0.90 -25.11 13.63 55.43 0.76 -24.35 16 11 Si 1.07 24.24 29.91 -169.99 -5.08 19.16 16 12 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 C -0.03 -0.75 4.98 -104.63 -0.52 -1.27 16 16 C -0.11 -2.19 9.35 -39.58 -0.37 -2.56 16 17 C -0.13 -2.32 10.05 -39.58 -0.40 -2.72 16 18 C -0.15 -2.59 10.05 -39.59 -0.40 -2.99 16 19 C -0.12 -2.30 10.05 -39.59 -0.40 -2.70 16 20 C -0.12 -2.55 9.54 -39.59 -0.38 -2.92 16 21 C 0.51 8.51 7.88 34.26 0.27 8.78 16 22 O -0.52 -9.15 16.01 -19.29 -0.31 -9.46 16 23 O -0.35 -5.39 9.80 -40.76 -0.40 -5.79 16 24 C 0.06 0.73 6.20 37.16 0.23 0.96 16 25 C -0.15 -1.43 10.29 37.16 0.38 -1.04 16 26 H 0.11 1.48 7.49 -52.49 -0.39 1.08 16 27 H 0.14 2.08 6.89 -52.49 -0.36 1.72 16 28 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 29 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.27 7.38 5.21 -40.82 -0.21 7.17 16 31 H 0.12 2.33 7.67 -52.49 -0.40 1.93 16 32 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 34 H 0.11 1.75 8.06 -52.48 -0.42 1.32 16 35 H 0.12 2.56 6.86 -52.48 -0.36 2.20 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 347.34 15.07 5.23 5.23 Total: -1.00 -29.91 347.34 -7.59 -37.50 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -5.47 Total: 4.70 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -2.05 Total: -18.21 kcal Atomic # 7 Polarization: -25.11 SS G_CDS: 0.76 Total: -24.35 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.98 Total: -24.04 kcal Atomic # 14 Polarization: 24.24 SS G_CDS: -5.08 Total: 19.16 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.91 -7.59 -37.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224357083.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.959 kcal (2) G-P(sol) polarization free energy of solvation -29.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds