Wall clock time and date at job start Tue Mar 31 2020 06:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 Si 1.63098 * 113.99881 * 2 1 4 4 C 1.86301 * 109.47310 * 60.00204 * 3 2 1 5 5 C 1.52997 * 109.46722 * 59.99764 * 4 3 2 6 6 C 1.53006 * 109.47113 * 180.02562 * 5 4 3 7 7 O 1.42899 * 109.47198 * 180.02562 * 6 5 4 8 8 C 1.42900 * 113.99701 * 180.02562 * 7 6 5 9 9 C 1.53782 * 113.61073 * 209.99653 * 8 7 6 10 10 C 1.53778 * 87.08074 * 220.01242 * 9 8 7 11 11 C 1.50708 * 113.61230 * 139.97997 * 10 9 8 12 12 N 1.27947 * 119.99709 * 336.53413 * 11 10 9 13 13 Si 1.86800 * 119.99941 * 156.53521 * 11 10 9 14 14 H 1.48498 * 109.46689 * 180.02562 * 13 11 10 15 15 H 1.48505 * 109.46653 * 299.99648 * 13 11 10 16 16 H 1.48492 * 109.47121 * 60.00015 * 13 11 10 17 17 C 1.53786 * 87.17071 * 25.39194 * 10 9 8 18 18 O 1.63103 * 109.47400 * 300.00054 * 3 2 1 19 19 C 1.42905 * 113.99989 * 300.00214 * 18 3 2 20 20 O 1.63100 * 109.47237 * 180.02562 * 3 2 1 21 21 C 1.42901 * 114.00480 * 180.02562 * 20 3 2 22 22 H 1.09004 * 109.47281 * 59.99935 * 1 2 3 23 23 H 1.09003 * 109.47238 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47059 * 299.99750 * 1 2 3 25 25 H 1.09001 * 109.46735 * 299.99789 * 4 3 2 26 26 H 1.08995 * 109.47268 * 179.97438 * 4 3 2 27 27 H 1.09001 * 109.47495 * 60.00490 * 5 4 3 28 28 H 1.08995 * 109.47317 * 300.00053 * 5 4 3 29 29 H 1.09001 * 109.46686 * 59.99815 * 6 5 4 30 30 H 1.09001 * 109.46977 * 300.00536 * 6 5 4 31 31 H 1.09002 * 112.90817 * 341.24337 * 8 7 6 32 32 H 1.09001 * 113.61301 * 105.46690 * 9 8 7 33 33 H 1.08996 * 113.61585 * 334.56962 * 9 8 7 34 34 H 1.08991 * 113.62094 * 270.79940 * 10 9 8 35 35 H 0.97001 * 119.99976 * 359.97438 * 12 11 10 36 36 H 1.09005 * 113.61382 * 89.15760 * 17 10 9 37 37 H 1.09000 * 113.61125 * 220.05678 * 17 10 9 38 38 H 1.08999 * 109.47121 * 299.99873 * 19 18 3 39 39 H 1.09000 * 109.46834 * 60.00055 * 19 18 3 40 40 H 1.08996 * 109.46628 * 179.97438 * 19 18 3 41 41 H 1.09000 * 109.47049 * 59.99696 * 21 20 3 42 42 H 1.09001 * 109.47312 * 180.02562 * 21 20 3 43 43 H 1.09004 * 109.46721 * 299.99741 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 14 2.0923 1.4900 0.0000 4 6 1.5427 2.4145 1.5212 5 6 1.9942 1.6552 2.7703 6 6 1.5422 2.4141 4.0197 7 8 1.9644 1.7052 5.1864 8 6 1.5903 2.3324 6.4147 9 6 2.5711 2.0623 7.5679 10 6 1.3397 1.9274 8.4791 11 6 1.4544 0.8138 9.4881 12 7 2.2427 -0.1698 9.2683 13 14 0.4458 0.8695 11.0594 14 1 0.7386 -0.3341 11.8783 15 1 0.7971 2.0894 11.8300 16 1 -0.9994 0.8979 10.7192 17 6 0.5457 1.5390 7.2206 18 8 1.6111 2.2995 -1.3317 19 6 1.9843 1.6717 -2.5600 20 8 3.7182 1.3613 -0.0007 21 6 4.4008 2.6167 -0.0002 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.4561 2.5006 1.5211 26 1 1.9863 3.4101 1.5214 27 1 3.0808 1.5691 2.7703 28 1 1.5508 0.6595 2.7703 29 1 0.4556 2.4998 4.0194 30 1 1.9852 3.4101 4.0199 31 1 1.3382 3.3859 6.2936 32 1 3.2035 2.9158 7.8121 33 1 3.1340 1.1359 7.4544 34 1 1.0199 2.8698 8.9235 35 1 2.7661 -0.1989 8.4522 36 1 0.5539 0.4691 7.0121 37 1 -0.4545 1.9707 7.1849 38 1 3.0699 1.5873 -2.6098 39 1 1.5399 0.6777 -2.6097 40 1 1.6274 2.2712 -3.3974 41 1 4.1232 3.1808 0.8903 42 1 5.4772 2.4451 -0.0011 43 1 4.1225 3.1819 -0.8898 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224747783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:16 Heat of formation + Delta-G solvation = -204.482341 kcal Electronic energy + Delta-G solvation = -21695.631293 eV Core-core repulsion = 18285.442918 eV Total energy + Delta-G solvation = -3410.188375 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.86849 -38.25007 -38.16533 -38.02471 -37.19712 -35.18460 -33.89799 -28.08156 -27.57631 -27.31210 -27.09172 -26.75423 -26.06911 -22.67084 -22.22245 -19.94517 -18.77640 -18.39831 -17.51550 -17.45515 -17.00126 -16.77574 -16.58723 -16.09184 -15.89306 -15.85920 -15.64769 -15.58228 -15.13804 -15.03656 -14.84539 -14.64070 -13.84761 -13.61415 -13.56519 -13.26592 -12.84778 -12.74117 -12.47574 -12.25455 -12.17923 -12.10938 -12.04323 -11.85267 -11.73418 -11.67512 -11.40329 -11.30955 -11.22247 -11.11558 -10.48555 -10.43548 -10.04298 0.91897 0.96230 1.27653 1.64320 1.87911 1.91455 1.97623 2.00207 2.11843 2.70415 3.45619 3.52715 3.71686 3.74865 3.97332 3.99149 4.19843 4.20753 4.21615 4.28114 4.32331 4.33868 4.36133 4.37100 4.40171 4.47412 4.55240 4.60857 4.67168 4.70790 4.75957 4.76293 4.79645 4.80096 4.88571 4.94920 5.02322 5.12415 5.13529 5.27238 5.37537 5.75354 6.28325 6.97107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 O -0.665 6.665 3 Si 1.652 2.348 4 C -0.531 4.531 5 C -0.101 4.101 6 C 0.063 3.937 7 O -0.375 6.375 8 C 0.065 3.935 9 C -0.137 4.137 10 C -0.144 4.144 11 C -0.023 4.023 12 N -0.632 5.632 13 Si 1.069 2.931 14 H -0.248 1.248 15 H -0.249 1.249 16 H -0.249 1.249 17 C -0.141 4.141 18 O -0.682 6.682 19 C 0.056 3.944 20 O -0.665 6.665 21 C 0.060 3.940 22 H 0.049 0.951 23 H 0.086 0.914 24 H 0.048 0.952 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.324 0.676 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.049 0.951 39 H 0.049 0.951 40 H 0.083 0.917 41 H 0.048 0.952 42 H 0.086 0.914 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.267 4.004 -1.849 4.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 O -0.626 6.626 3 Si 1.688 2.312 4 C -0.606 4.606 5 C -0.139 4.139 6 C -0.013 4.013 7 O -0.294 6.294 8 C 0.007 3.993 9 C -0.175 4.175 10 C -0.165 4.165 11 C -0.268 4.268 12 N -0.245 5.245 13 Si 0.883 3.117 14 H -0.171 1.171 15 H -0.173 1.173 16 H -0.172 1.172 17 C -0.180 4.180 18 O -0.643 6.643 19 C -0.039 4.039 20 O -0.626 6.626 21 C -0.035 4.035 22 H 0.068 0.932 23 H 0.105 0.895 24 H 0.067 0.933 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.129 0.871 35 H 0.144 0.856 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.101 0.899 41 H 0.067 0.933 42 H 0.105 0.895 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.229 2.757 -0.655 3.605 hybrid contribution 0.146 1.360 -1.082 1.745 sum -2.083 4.117 -1.737 4.931 Atomic orbital electron populations 1.22155 0.77154 1.03747 1.00460 1.85415 1.23968 1.62162 1.91036 0.72552 0.51680 0.48432 0.58519 1.27823 1.07027 1.09814 1.15907 1.20904 1.02111 0.99422 0.91454 1.22676 0.98366 0.95117 0.85170 1.87960 1.78561 1.49657 1.13217 1.23648 0.95649 0.96584 0.83440 1.23331 0.96678 1.03375 0.94100 1.22610 0.98439 1.00547 0.94873 1.31512 0.98014 0.91181 1.06120 1.69491 1.05681 1.23898 1.25409 0.83521 0.76236 0.81065 0.70879 1.17071 1.17293 1.17237 1.23536 0.98717 1.02085 0.93704 1.85547 1.82108 1.67003 1.29623 1.22135 0.99385 0.96914 0.85433 1.85416 1.48727 1.37407 1.91037 1.22154 0.98728 0.82171 1.00457 0.93211 0.89521 0.93320 0.89986 0.90000 0.90819 0.90820 0.93384 0.93415 0.89136 0.90151 0.89141 0.87060 0.85602 0.89094 0.90288 0.93244 0.93251 0.89855 0.93329 0.89523 0.93211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.04 10.20 101.05 1.03 0.99 16 2 O -0.67 -1.32 8.92 -63.55 -0.57 -1.89 16 3 Si 1.65 1.24 9.84 -169.99 -1.67 -0.43 16 4 C -0.53 0.02 4.14 37.16 0.15 0.18 16 5 C -0.10 -0.12 4.96 -26.73 -0.13 -0.25 16 6 C 0.06 0.07 5.78 37.16 0.21 0.28 16 7 O -0.37 -0.97 10.36 -35.23 -0.36 -1.34 16 8 C 0.06 0.02 4.31 -25.83 -0.11 -0.09 16 9 C -0.14 -0.02 7.31 -25.92 -0.19 -0.21 16 10 C -0.14 0.10 3.69 -90.95 -0.34 -0.24 16 11 C -0.02 -0.01 5.11 -13.89 -0.07 -0.08 16 12 N -0.63 -1.66 13.39 56.23 0.75 -0.91 16 13 Si 1.07 -0.80 29.98 -169.99 -5.10 -5.90 16 14 H -0.25 -0.27 7.11 56.52 0.40 0.14 16 15 H -0.25 0.26 7.11 56.52 0.40 0.66 16 16 H -0.25 0.23 7.11 56.52 0.40 0.63 16 17 C -0.14 0.02 7.48 -25.83 -0.19 -0.17 16 18 O -0.68 -0.63 8.92 -63.56 -0.57 -1.19 16 19 C 0.06 -0.03 10.20 101.05 1.03 1.00 16 20 O -0.67 -1.31 8.92 -63.56 -0.57 -1.88 16 21 C 0.06 -0.04 10.20 101.05 1.03 0.99 16 22 H 0.05 -0.09 7.83 -51.93 -0.41 -0.50 16 23 H 0.09 -0.14 8.14 -51.93 -0.42 -0.56 16 24 H 0.05 -0.10 7.21 -51.93 -0.37 -0.47 16 25 H 0.08 -0.06 7.48 -51.93 -0.39 -0.45 16 26 H 0.08 -0.06 7.48 -51.93 -0.39 -0.45 16 27 H 0.07 0.11 7.97 -51.93 -0.41 -0.30 16 28 H 0.07 0.12 7.96 -51.93 -0.41 -0.30 16 29 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16 30 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16 31 H 0.09 -0.10 7.87 -51.93 -0.41 -0.51 16 32 H 0.08 -0.06 8.14 -51.93 -0.42 -0.48 16 33 H 0.09 0.10 6.04 -51.93 -0.31 -0.21 16 34 H 0.11 -0.31 7.88 -51.93 -0.41 -0.72 16 35 H 0.32 0.70 6.46 -40.82 -0.26 0.44 16 36 H 0.09 0.11 8.09 -51.93 -0.42 -0.31 16 37 H 0.08 -0.11 8.14 -51.93 -0.42 -0.53 16 38 H 0.05 -0.05 7.83 -51.93 -0.41 -0.46 16 39 H 0.05 -0.05 7.83 -51.93 -0.41 -0.46 16 40 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 41 H 0.05 -0.10 7.21 -51.93 -0.37 -0.47 16 42 H 0.09 -0.14 8.14 -51.93 -0.42 -0.56 16 43 H 0.05 -0.09 7.83 -51.93 -0.41 -0.50 16 LS Contribution 354.96 15.07 5.35 5.35 Total: 0.00 -5.70 354.96 -7.85 -13.55 By element: Atomic # 1 Polarization: -0.23 SS G_CDS: -7.55 Total: -7.78 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: 2.43 Total: 2.41 kcal Atomic # 7 Polarization: -1.66 SS G_CDS: 0.75 Total: -0.91 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -2.07 Total: -6.29 kcal Atomic # 14 Polarization: 0.44 SS G_CDS: -6.77 Total: -6.33 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -5.70 -7.85 -13.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224747783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.930 kcal (2) G-P(sol) polarization free energy of solvation -5.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds