Wall clock time and date at job start Tue Mar 31 2020 06:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 Si 1.63098 * 113.99881 * 2 1 4 4 C 1.86301 * 109.47310 * 60.00204 * 3 2 1 5 5 C 1.52997 * 109.46722 * 59.99764 * 4 3 2 6 6 C 1.53006 * 109.47113 * 180.02562 * 5 4 3 7 7 O 1.42899 * 109.47198 * 180.02562 * 6 5 4 8 8 C 1.42900 * 113.99701 * 180.02562 * 7 6 5 9 9 C 1.53782 * 113.61073 * 209.99653 * 8 7 6 10 10 C 1.53778 * 87.08074 * 220.01242 * 9 8 7 11 11 C 1.50708 * 113.61230 * 139.97997 * 10 9 8 12 12 N 1.27947 * 119.99709 * 336.53413 * 11 10 9 13 13 Si 1.86800 * 119.99941 * 156.53521 * 11 10 9 14 14 H 1.48498 * 109.46689 * 180.02562 * 13 11 10 15 15 H 1.48505 * 109.46653 * 299.99648 * 13 11 10 16 16 H 1.48492 * 109.47121 * 60.00015 * 13 11 10 17 17 C 1.53786 * 87.17071 * 25.39194 * 10 9 8 18 18 O 1.63103 * 109.47400 * 300.00054 * 3 2 1 19 19 C 1.42905 * 113.99989 * 300.00214 * 18 3 2 20 20 O 1.63100 * 109.47237 * 180.02562 * 3 2 1 21 21 C 1.42901 * 114.00480 * 180.02562 * 20 3 2 22 22 H 1.09004 * 109.47281 * 59.99935 * 1 2 3 23 23 H 1.09003 * 109.47238 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47059 * 299.99750 * 1 2 3 25 25 H 1.09001 * 109.46735 * 299.99789 * 4 3 2 26 26 H 1.08995 * 109.47268 * 179.97438 * 4 3 2 27 27 H 1.09001 * 109.47495 * 60.00490 * 5 4 3 28 28 H 1.08995 * 109.47317 * 300.00053 * 5 4 3 29 29 H 1.09001 * 109.46686 * 59.99815 * 6 5 4 30 30 H 1.09001 * 109.46977 * 300.00536 * 6 5 4 31 31 H 1.09002 * 112.90817 * 341.24337 * 8 7 6 32 32 H 1.09001 * 113.61301 * 105.46690 * 9 8 7 33 33 H 1.08996 * 113.61585 * 334.56962 * 9 8 7 34 34 H 1.08991 * 113.62094 * 270.79940 * 10 9 8 35 35 H 0.97001 * 119.99976 * 359.97438 * 12 11 10 36 36 H 1.09005 * 113.61382 * 89.15760 * 17 10 9 37 37 H 1.09000 * 113.61125 * 220.05678 * 17 10 9 38 38 H 1.08999 * 109.47121 * 299.99873 * 19 18 3 39 39 H 1.09000 * 109.46834 * 60.00055 * 19 18 3 40 40 H 1.08996 * 109.46628 * 179.97438 * 19 18 3 41 41 H 1.09000 * 109.47049 * 59.99696 * 21 20 3 42 42 H 1.09001 * 109.47312 * 180.02562 * 21 20 3 43 43 H 1.09004 * 109.46721 * 299.99741 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 14 2.0923 1.4900 0.0000 4 6 1.5427 2.4145 1.5212 5 6 1.9942 1.6552 2.7703 6 6 1.5422 2.4141 4.0197 7 8 1.9644 1.7052 5.1864 8 6 1.5903 2.3324 6.4147 9 6 2.5711 2.0623 7.5679 10 6 1.3397 1.9274 8.4791 11 6 1.4544 0.8138 9.4881 12 7 2.2427 -0.1698 9.2683 13 14 0.4458 0.8695 11.0594 14 1 0.7386 -0.3341 11.8783 15 1 0.7971 2.0894 11.8300 16 1 -0.9994 0.8979 10.7192 17 6 0.5457 1.5390 7.2206 18 8 1.6111 2.2995 -1.3317 19 6 1.9843 1.6717 -2.5600 20 8 3.7182 1.3613 -0.0007 21 6 4.4008 2.6167 -0.0002 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.4561 2.5006 1.5211 26 1 1.9863 3.4101 1.5214 27 1 3.0808 1.5691 2.7703 28 1 1.5508 0.6595 2.7703 29 1 0.4556 2.4998 4.0194 30 1 1.9852 3.4101 4.0199 31 1 1.3382 3.3859 6.2936 32 1 3.2035 2.9158 7.8121 33 1 3.1340 1.1359 7.4544 34 1 1.0199 2.8698 8.9235 35 1 2.7661 -0.1989 8.4522 36 1 0.5539 0.4691 7.0121 37 1 -0.4545 1.9707 7.1849 38 1 3.0699 1.5873 -2.6098 39 1 1.5399 0.6777 -2.6097 40 1 1.6274 2.2712 -3.3974 41 1 4.1232 3.1808 0.8903 42 1 5.4772 2.4451 -0.0011 43 1 4.1225 3.1819 -0.8898 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224747783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:15 Heat of formation + Delta-G solvation = -197.766547 kcal Electronic energy + Delta-G solvation = -21695.340075 eV Core-core repulsion = 18285.442918 eV Total energy + Delta-G solvation = -3409.897157 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.86957 -38.26517 -38.22547 -38.02189 -37.21393 -35.24451 -33.95602 -28.04603 -27.53210 -27.28085 -27.02710 -26.73673 -26.08891 -22.70694 -22.25811 -19.94037 -18.78513 -18.43788 -17.51756 -17.45052 -17.00479 -16.80526 -16.56403 -16.08341 -15.86428 -15.85394 -15.64423 -15.56435 -15.08153 -15.00552 -14.85771 -14.66523 -13.85284 -13.61478 -13.57809 -13.26970 -12.83703 -12.72073 -12.45718 -12.23539 -12.14566 -12.06243 -12.00808 -11.85534 -11.73024 -11.68083 -11.38088 -11.28850 -11.20519 -11.14723 -10.48712 -10.47032 -10.09348 0.89886 0.99473 1.29653 1.68881 1.90277 1.93542 1.98855 2.05326 2.12609 2.69326 3.47987 3.54417 3.74999 3.78086 3.94611 3.99371 4.18796 4.26577 4.30822 4.33943 4.40020 4.42855 4.45397 4.46898 4.48604 4.51458 4.54332 4.59571 4.69753 4.77502 4.80435 4.85940 4.87601 4.89471 4.90299 4.92110 5.03110 5.08478 5.15145 5.29145 5.37409 5.79313 6.26857 6.90143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.688 6.688 3 Si 1.652 2.348 4 C -0.524 4.524 5 C -0.104 4.104 6 C 0.061 3.939 7 O -0.400 6.400 8 C 0.060 3.940 9 C -0.142 4.142 10 C -0.140 4.140 11 C -0.024 4.024 12 N -0.666 5.666 13 Si 1.103 2.897 14 H -0.280 1.280 15 H -0.237 1.237 16 H -0.240 1.240 17 C -0.141 4.141 18 O -0.687 6.687 19 C 0.044 3.956 20 O -0.688 6.688 21 C 0.046 3.954 22 H 0.060 0.940 23 H 0.092 0.908 24 H 0.060 0.940 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.141 0.859 35 H 0.320 0.680 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.097 0.903 41 H 0.060 0.940 42 H 0.092 0.908 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.207 5.623 -1.648 6.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.648 6.648 3 Si 1.689 2.311 4 C -0.599 4.599 5 C -0.141 4.141 6 C -0.015 4.015 7 O -0.319 6.319 8 C 0.002 3.998 9 C -0.180 4.180 10 C -0.161 4.161 11 C -0.267 4.267 12 N -0.280 5.280 13 Si 0.916 3.084 14 H -0.205 1.205 15 H -0.160 1.160 16 H -0.163 1.163 17 C -0.180 4.180 18 O -0.648 6.648 19 C -0.051 4.051 20 O -0.648 6.648 21 C -0.048 4.048 22 H 0.079 0.921 23 H 0.110 0.890 24 H 0.079 0.921 25 H 0.109 0.891 26 H 0.110 0.890 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.128 0.872 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.159 0.841 35 H 0.140 0.860 36 H 0.089 0.911 37 H 0.115 0.885 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.115 0.885 41 H 0.079 0.921 42 H 0.110 0.890 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.169 4.391 -0.476 5.436 hybrid contribution 0.455 0.825 -1.163 1.497 sum -2.714 5.216 -1.639 6.104 Atomic orbital electron populations 1.22402 0.76207 1.04597 1.01631 1.85422 1.25272 1.62897 1.91254 0.72509 0.51394 0.48400 0.58792 1.27707 1.07650 1.09928 1.14660 1.20912 1.01537 0.99309 0.92353 1.22755 0.98923 0.95287 0.84569 1.87938 1.79022 1.50715 1.14269 1.23852 0.95730 0.97524 0.82652 1.23349 0.97100 1.02941 0.94638 1.22728 0.97784 1.01238 0.94334 1.32046 0.96945 0.90818 1.06917 1.69538 1.07243 1.25342 1.25848 0.83109 0.76074 0.79945 0.69241 1.20506 1.15965 1.16349 1.23497 0.99661 1.00986 0.93859 1.85547 1.82164 1.67129 1.30001 1.22341 0.99843 0.97436 0.85470 1.85422 1.49468 1.38696 1.91253 1.22403 0.99094 0.81709 1.01630 0.92110 0.88972 0.92120 0.89067 0.89049 0.91709 0.91782 0.92535 0.92445 0.87178 0.89211 0.90856 0.84146 0.86000 0.91088 0.88537 0.92907 0.92923 0.88499 0.92114 0.88955 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.04 10.20 113.37 1.16 1.11 16 2 O -0.69 -3.31 8.92 -121.90 -1.09 -4.40 16 3 Si 1.65 3.20 9.84 68.60 0.67 3.88 16 4 C -0.52 0.15 4.14 71.98 0.30 0.45 16 5 C -0.10 -0.30 4.96 30.60 0.15 -0.14 16 6 C 0.06 0.12 5.78 71.98 0.42 0.53 16 7 O -0.40 -2.28 10.36 -148.98 -1.54 -3.83 16 8 C 0.06 0.02 4.31 31.18 0.13 0.16 16 9 C -0.14 -0.05 7.31 31.12 0.23 0.17 16 10 C -0.14 0.30 3.69 -11.01 -0.04 0.26 16 11 C -0.02 -0.03 5.11 88.68 0.45 0.42 16 12 N -0.67 -4.43 13.39 24.11 0.32 -4.11 16 13 Si 1.10 -2.31 29.98 68.60 2.06 -0.25 16 14 H -0.28 -0.90 7.11 99.48 0.71 -0.20 16 15 H -0.24 0.93 7.11 99.48 0.71 1.64 16 16 H -0.24 0.80 7.11 99.48 0.71 1.51 16 17 C -0.14 0.09 7.48 31.18 0.23 0.33 16 18 O -0.69 -1.24 8.92 -121.90 -1.09 -2.33 16 19 C 0.04 -0.04 10.20 113.37 1.16 1.12 16 20 O -0.69 -3.27 8.92 -121.90 -1.09 -4.36 16 21 C 0.05 -0.05 10.20 113.37 1.16 1.11 16 22 H 0.06 -0.22 7.83 -2.39 -0.02 -0.24 16 23 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 24 H 0.06 -0.23 7.21 -2.39 -0.02 -0.25 16 25 H 0.09 -0.20 7.48 -2.39 -0.02 -0.22 16 26 H 0.09 -0.20 7.48 -2.39 -0.02 -0.22 16 27 H 0.06 0.28 7.97 -2.39 -0.02 0.26 16 28 H 0.06 0.28 7.96 -2.39 -0.02 0.26 16 29 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.11 -0.43 7.87 -2.39 -0.02 -0.45 16 32 H 0.09 -0.17 8.14 -2.39 -0.02 -0.19 16 33 H 0.07 0.29 6.04 -2.39 -0.01 0.27 16 34 H 0.14 -1.12 7.88 -2.39 -0.02 -1.14 16 35 H 0.32 2.07 6.46 -92.71 -0.60 1.47 16 36 H 0.07 0.25 8.09 -2.38 -0.02 0.23 16 37 H 0.10 -0.42 8.14 -2.39 -0.02 -0.44 16 38 H 0.05 -0.09 7.83 -2.39 -0.02 -0.11 16 39 H 0.05 -0.09 7.83 -2.39 -0.02 -0.11 16 40 H 0.10 -0.39 8.14 -2.39 -0.02 -0.41 16 41 H 0.06 -0.24 7.21 -2.39 -0.02 -0.26 16 42 H 0.09 -0.26 8.14 -2.39 -0.02 -0.28 16 43 H 0.06 -0.22 7.83 -2.38 -0.02 -0.24 16 Total: 0.00 -14.04 354.96 4.72 -9.32 By element: Atomic # 1 Polarization: -0.55 SS G_CDS: 1.13 Total: 0.58 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 5.34 Total: 5.51 kcal Atomic # 7 Polarization: -4.43 SS G_CDS: 0.32 Total: -4.11 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -4.80 Total: -14.92 kcal Atomic # 14 Polarization: 0.90 SS G_CDS: 2.73 Total: 3.63 kcal Total: -14.04 4.72 -9.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224747783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.451 kcal (2) G-P(sol) polarization free energy of solvation -14.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds