Wall clock time and date at job start Tue Mar 31 2020 06:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34231 * 116.99719 * 2 1 4 4 O 1.20834 * 119.99800 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00157 * 180.02562 * 3 2 1 6 6 C 1.53002 * 115.56416 * 34.30585 * 5 3 2 7 7 O 1.42905 * 109.46854 * 325.69157 * 6 5 3 8 8 C 1.42896 * 113.99982 * 179.97438 * 7 6 5 9 9 H 1.09004 * 109.46938 * 30.00536 * 8 7 6 10 10 C 1.50695 * 109.47173 * 270.00039 * 8 7 6 11 11 H 1.07995 * 120.00101 * 324.87065 * 10 8 7 12 12 C 1.37877 * 119.99855 * 144.87634 * 10 8 7 13 13 N 1.31516 * 120.00395 * 5.13709 * 12 10 8 14 14 Si 1.86806 * 119.99905 * 185.14513 * 12 10 8 15 15 H 1.48496 * 109.47202 * 89.99737 * 14 12 10 16 16 H 1.48504 * 109.46863 * 209.99905 * 14 12 10 17 17 H 1.48495 * 109.47070 * 329.99338 * 14 12 10 18 18 C 1.50698 * 109.47034 * 149.99858 * 8 7 6 19 19 C 1.38238 * 119.99879 * 37.83385 * 18 8 7 20 20 C 1.38241 * 119.99717 * 179.78927 * 19 18 8 21 21 C 1.38239 * 120.00258 * 0.43700 * 20 19 18 22 22 C 1.38237 * 119.99752 * 359.81808 * 21 20 19 23 23 C 1.38234 * 119.99926 * 359.97438 * 22 21 20 24 24 C 1.53001 * 117.49829 * 248.61968 * 5 3 2 25 25 C 1.53002 * 117.49889 * 179.97438 * 5 3 2 26 26 H 1.08995 * 109.47166 * 60.00671 * 1 2 3 27 27 H 1.09000 * 109.46597 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47287 * 299.99987 * 1 2 3 29 29 H 1.08995 * 109.47315 * 85.68586 * 6 5 3 30 30 H 1.09001 * 109.47388 * 205.69357 * 6 5 3 31 31 H 0.96998 * 120.00296 * 180.02562 * 13 12 10 32 32 H 1.07992 * 120.00257 * 359.97438 * 19 18 8 33 33 H 1.08000 * 119.99962 * 180.28001 * 20 19 18 34 34 H 1.07997 * 119.99777 * 179.83834 * 21 20 19 35 35 H 1.07999 * 120.00162 * 179.97438 * 22 21 20 36 36 H 1.08007 * 119.99701 * 180.02562 * 23 22 21 37 37 H 1.08999 * 117.49799 * 359.97438 * 24 5 3 38 38 H 1.08997 * 117.49899 * 145.02278 * 24 5 3 39 39 H 1.09005 * 117.49670 * 214.97699 * 25 5 3 40 40 H 1.09000 * 117.50072 * 359.97438 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.2850 0.1712 -0.7790 7 8 3.5496 -1.0487 -0.6645 8 6 4.1381 -2.1496 -1.3598 9 1 5.2207 -2.0255 -1.3866 10 6 3.6030 -2.1985 -2.7677 11 1 2.5792 -1.9180 -2.9663 12 6 4.4204 -2.6015 -3.8023 13 7 5.6345 -3.0392 -3.5490 14 14 3.8037 -2.5255 -5.5639 15 1 4.1351 -1.2010 -6.1477 16 1 4.4540 -3.5953 -6.3626 17 1 2.3316 -2.7201 -5.5818 18 6 3.7972 -3.4334 -0.6479 19 6 2.5459 -3.6001 -0.0846 20 6 2.2317 -4.7794 0.5647 21 6 3.1719 -5.7885 0.6584 22 6 4.4250 -5.6198 0.0996 23 6 4.7376 -4.4421 -0.5534 24 6 4.2463 1.8059 1.2630 25 6 4.2006 2.6673 -0.0012 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 4.3569 0.4548 -1.8290 30 1 5.2861 0.0316 -0.3709 31 1 6.2097 -3.3224 -4.2768 32 1 1.8128 -2.8102 -0.1542 33 1 1.2526 -4.9114 1.0009 34 1 2.9273 -6.7088 1.1678 35 1 5.1596 -6.4079 0.1731 36 1 5.7166 -4.3105 -0.9903 37 1 3.6052 2.0984 2.0946 38 1 5.2057 1.3688 1.5397 39 1 5.1300 2.7967 -0.5558 40 1 3.5295 3.5262 -0.0016 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224982431.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:50 Heat of formation + Delta-G solvation = -78.770292 kcal Electronic energy + Delta-G solvation = -23650.709542 eV Core-core repulsion = 20203.730662 eV Total energy + Delta-G solvation = -3446.978880 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.27442 -38.38664 -37.50837 -36.24351 -35.39229 -32.82395 -30.63597 -29.92403 -27.97430 -26.91158 -25.94749 -23.31829 -22.89817 -22.44811 -21.52213 -20.09009 -19.42998 -17.12606 -16.79140 -16.44405 -16.00404 -15.80222 -15.28404 -14.66295 -14.46252 -14.22126 -13.93213 -13.57460 -13.39627 -12.95727 -12.89797 -12.43912 -12.29043 -12.09232 -11.78180 -11.54088 -11.44688 -11.30519 -11.01043 -10.84872 -10.55747 -10.34190 -10.30612 -10.24231 -10.13918 -10.05155 -9.73880 -9.38321 -8.63154 -8.34758 -7.97808 -7.60636 -6.18266 -4.24806 2.35908 2.36674 2.43863 3.07611 3.23037 3.30002 3.34360 3.85007 4.28532 4.40440 4.80675 4.88445 4.98969 5.14262 5.16888 5.37560 5.41537 5.47953 5.63464 5.70287 5.77344 5.82288 5.87164 5.90514 6.01066 6.10663 6.17395 6.37448 6.43044 6.52344 6.61997 6.79296 6.93783 7.05104 7.16103 7.38237 7.51674 7.74509 7.76826 7.98950 8.13999 8.16942 8.37387 8.97585 9.42971 10.86019 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.011362 B = 0.006775 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.678616 B = 4132.123614 C = 5215.130599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.306 6.306 3 C 0.511 3.489 4 O -0.531 6.531 5 C -0.135 4.135 6 C 0.114 3.886 7 O -0.376 6.376 8 C 0.234 3.766 9 H 0.053 0.947 10 C -0.521 4.521 11 H 0.064 0.936 12 C 0.069 3.931 13 N -0.885 5.885 14 Si 0.895 3.105 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.272 1.272 18 C -0.026 4.026 19 C -0.105 4.105 20 C -0.137 4.137 21 C -0.152 4.152 22 C -0.133 4.133 23 C -0.107 4.107 24 C -0.146 4.146 25 C -0.141 4.141 26 H 0.057 0.943 27 H 0.099 0.901 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.046 0.954 31 H 0.265 0.735 32 H 0.120 0.880 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.123 0.877 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.531 4.067 8.177 9.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.220 6.220 3 C 0.355 3.645 4 O -0.422 6.422 5 C -0.136 4.136 6 C 0.037 3.963 7 O -0.296 6.296 8 C 0.178 3.822 9 H 0.071 0.929 10 C -0.559 4.559 11 H 0.082 0.918 12 C -0.135 4.135 13 N -0.522 5.522 14 Si 0.723 3.277 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.197 1.197 18 C -0.027 4.027 19 C -0.123 4.123 20 C -0.155 4.155 21 C -0.170 4.170 22 C -0.151 4.151 23 C -0.125 4.125 24 C -0.183 4.183 25 C -0.177 4.177 26 H 0.076 0.924 27 H 0.117 0.883 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.138 0.862 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.141 0.859 37 H 0.116 0.884 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.767 4.228 8.183 9.617 hybrid contribution -0.317 -0.168 -1.348 1.395 sum -3.085 4.060 6.835 8.527 Atomic orbital electron populations 1.23225 0.77934 1.03425 1.01526 1.86825 1.21429 1.31338 1.82375 1.22231 0.89809 0.81373 0.71073 1.90599 1.66961 1.36969 1.47623 1.21126 0.88782 0.98532 1.05142 1.21563 0.92550 0.84479 0.97754 1.87857 1.50463 1.17088 1.74209 1.18803 0.94770 0.79880 0.88716 0.92907 1.21459 0.98687 1.44971 0.90770 0.91796 1.24991 0.94773 0.94299 0.99422 1.69892 1.07752 1.41972 1.32594 0.86535 0.79286 0.77789 0.84140 1.20471 1.21108 1.19688 1.20323 0.92892 0.97346 0.92110 1.20975 0.97133 0.96589 0.97571 1.20971 0.98506 0.94583 1.01428 1.20817 0.94563 0.98690 1.02909 1.20952 0.96532 0.97566 1.00048 1.21047 1.00158 0.93264 0.98047 1.23171 1.02091 1.01965 0.91061 1.23127 1.02301 0.92055 1.00262 0.92376 0.88279 0.92759 0.92467 0.93556 0.92525 0.86221 0.87708 0.87832 0.87559 0.85866 0.88369 0.87161 0.87240 0.87297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 101.05 1.07 1.54 16 2 O -0.31 -5.62 8.32 -46.82 -0.39 -6.01 16 3 C 0.51 9.28 7.48 36.00 0.27 9.55 16 4 O -0.53 -10.09 16.01 -18.76 -0.30 -10.39 16 5 C -0.13 -2.19 2.54 -155.66 -0.39 -2.58 16 6 C 0.11 2.15 5.86 37.16 0.22 2.37 16 7 O -0.38 -8.25 6.87 -58.00 -0.40 -8.65 16 8 C 0.23 5.65 2.40 -29.04 -0.07 5.58 16 9 H 0.05 1.37 6.91 -51.93 -0.36 1.01 16 10 C -0.52 -13.78 8.62 -34.44 -0.30 -14.08 16 11 H 0.06 1.75 7.82 -52.49 -0.41 1.34 16 12 C 0.07 1.81 5.45 -17.82 -0.10 1.71 16 13 N -0.88 -23.74 12.84 55.43 0.71 -23.03 16 14 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 C -0.03 -0.60 4.97 -104.62 -0.52 -1.12 16 19 C -0.10 -2.20 9.36 -39.58 -0.37 -2.57 16 20 C -0.14 -2.52 10.05 -39.58 -0.40 -2.92 16 21 C -0.15 -2.70 10.05 -39.58 -0.40 -3.10 16 22 C -0.13 -2.53 10.05 -39.58 -0.40 -2.92 16 23 C -0.11 -2.34 9.67 -39.58 -0.38 -2.73 16 24 C -0.15 -1.84 9.88 -26.71 -0.26 -2.11 16 25 C -0.14 -1.80 9.76 -26.71 -0.26 -2.06 16 26 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 27 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.05 0.69 8.13 -51.93 -0.42 0.27 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.05 0.81 7.84 -51.93 -0.41 0.40 16 31 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 32 H 0.12 2.51 7.71 -52.49 -0.40 2.10 16 33 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.12 2.81 8.05 -52.48 -0.42 2.38 16 37 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.11 1.23 8.05 -51.93 -0.42 0.81 16 39 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.11 1.39 7.67 -51.93 -0.40 0.99 16 LS Contribution 346.95 15.07 5.23 5.23 Total: -1.00 -29.57 346.95 -8.22 -37.80 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -5.76 Total: 4.70 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -2.30 Total: -15.43 kcal Atomic # 7 Polarization: -23.74 SS G_CDS: 0.71 Total: -23.03 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -1.09 Total: -25.05 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.57 -8.22 -37.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224982431.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.974 kcal (2) G-P(sol) polarization free energy of solvation -29.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds