Wall clock time and date at job start Tue Mar 31 2020 06:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34231 * 116.99719 * 2 1 4 4 O 1.20834 * 119.99800 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00157 * 180.02562 * 3 2 1 6 6 C 1.53002 * 115.56416 * 34.30585 * 5 3 2 7 7 O 1.42905 * 109.46854 * 325.69157 * 6 5 3 8 8 C 1.42896 * 113.99982 * 179.97438 * 7 6 5 9 9 H 1.09004 * 109.46938 * 30.00536 * 8 7 6 10 10 C 1.50695 * 109.47173 * 270.00039 * 8 7 6 11 11 H 1.07995 * 120.00101 * 324.87065 * 10 8 7 12 12 C 1.37877 * 119.99855 * 144.87634 * 10 8 7 13 13 N 1.31516 * 120.00395 * 5.13709 * 12 10 8 14 14 Si 1.86806 * 119.99905 * 185.14513 * 12 10 8 15 15 H 1.48496 * 109.47202 * 89.99737 * 14 12 10 16 16 H 1.48504 * 109.46863 * 209.99905 * 14 12 10 17 17 H 1.48495 * 109.47070 * 329.99338 * 14 12 10 18 18 C 1.50698 * 109.47034 * 149.99858 * 8 7 6 19 19 C 1.38238 * 119.99879 * 37.83385 * 18 8 7 20 20 C 1.38241 * 119.99717 * 179.78927 * 19 18 8 21 21 C 1.38239 * 120.00258 * 0.43700 * 20 19 18 22 22 C 1.38237 * 119.99752 * 359.81808 * 21 20 19 23 23 C 1.38234 * 119.99926 * 359.97438 * 22 21 20 24 24 C 1.53001 * 117.49829 * 248.61968 * 5 3 2 25 25 C 1.53002 * 117.49889 * 179.97438 * 5 3 2 26 26 H 1.08995 * 109.47166 * 60.00671 * 1 2 3 27 27 H 1.09000 * 109.46597 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47287 * 299.99987 * 1 2 3 29 29 H 1.08995 * 109.47315 * 85.68586 * 6 5 3 30 30 H 1.09001 * 109.47388 * 205.69357 * 6 5 3 31 31 H 0.96998 * 120.00296 * 180.02562 * 13 12 10 32 32 H 1.07992 * 120.00257 * 359.97438 * 19 18 8 33 33 H 1.08000 * 119.99962 * 180.28001 * 20 19 18 34 34 H 1.07997 * 119.99777 * 179.83834 * 21 20 19 35 35 H 1.07999 * 120.00162 * 179.97438 * 22 21 20 36 36 H 1.08007 * 119.99701 * 180.02562 * 23 22 21 37 37 H 1.08999 * 117.49799 * 359.97438 * 24 5 3 38 38 H 1.08997 * 117.49899 * 145.02278 * 24 5 3 39 39 H 1.09005 * 117.49670 * 214.97699 * 25 5 3 40 40 H 1.09000 * 117.50072 * 359.97438 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.2850 0.1712 -0.7790 7 8 3.5496 -1.0487 -0.6645 8 6 4.1381 -2.1496 -1.3598 9 1 5.2207 -2.0255 -1.3866 10 6 3.6030 -2.1985 -2.7677 11 1 2.5792 -1.9180 -2.9663 12 6 4.4204 -2.6015 -3.8023 13 7 5.6345 -3.0392 -3.5490 14 14 3.8037 -2.5255 -5.5639 15 1 4.1351 -1.2010 -6.1477 16 1 4.4540 -3.5953 -6.3626 17 1 2.3316 -2.7201 -5.5818 18 6 3.7972 -3.4334 -0.6479 19 6 2.5459 -3.6001 -0.0846 20 6 2.2317 -4.7794 0.5647 21 6 3.1719 -5.7885 0.6584 22 6 4.4250 -5.6198 0.0996 23 6 4.7376 -4.4421 -0.5534 24 6 4.2463 1.8059 1.2630 25 6 4.2006 2.6673 -0.0012 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 4.3569 0.4548 -1.8290 30 1 5.2861 0.0316 -0.3709 31 1 6.2097 -3.3224 -4.2768 32 1 1.8128 -2.8102 -0.1542 33 1 1.2526 -4.9114 1.0009 34 1 2.9273 -6.7088 1.1678 35 1 5.1596 -6.4079 0.1731 36 1 5.7166 -4.3105 -0.9903 37 1 3.6052 2.0984 2.0946 38 1 5.2057 1.3688 1.5397 39 1 5.1300 2.7967 -0.5558 40 1 3.5295 3.5262 -0.0016 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224982431.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:49 Heat of formation + Delta-G solvation = -92.798800 kcal Electronic energy + Delta-G solvation = -23651.317864 eV Core-core repulsion = 20203.730662 eV Total energy + Delta-G solvation = -3447.587202 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.61703 -39.98631 -38.83738 -37.75487 -36.80658 -34.76051 -32.29115 -31.47273 -29.25686 -28.55265 -27.55985 -24.79185 -24.55353 -23.47809 -23.07291 -21.74506 -20.75209 -18.73144 -18.49706 -17.87848 -17.46587 -17.21639 -16.98512 -16.23684 -15.99430 -15.65582 -15.50291 -15.05173 -14.84191 -14.40915 -14.18345 -13.99143 -13.93142 -13.54305 -13.34615 -13.11499 -12.90568 -12.77724 -12.51518 -12.44113 -12.09201 -11.97006 -11.74018 -11.65335 -11.59419 -11.46988 -11.22967 -11.13217 -10.62340 -10.05438 -9.53084 -9.26637 -8.17942 -6.31714 0.79209 0.81327 1.09475 1.36455 1.38121 1.47388 1.85478 2.36191 2.66361 2.96537 3.12860 3.29367 3.74146 3.81276 3.87038 4.03989 4.29342 4.32855 4.34455 4.35860 4.49283 4.60733 4.65043 4.67143 4.73368 4.81467 4.83025 4.88585 4.95766 5.03679 5.14646 5.22432 5.44139 5.46020 5.50052 5.66150 5.84237 5.92270 6.10572 6.19403 6.42586 6.50875 6.82003 7.02938 7.39971 8.84283 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.011362 B = 0.006775 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.678616 B = 4132.123614 C = 5215.130599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.330 6.330 3 C 0.506 3.494 4 O -0.546 6.546 5 C -0.168 4.168 6 C 0.114 3.886 7 O -0.380 6.380 8 C 0.244 3.756 9 H 0.024 0.976 10 C -0.535 4.535 11 H 0.046 0.954 12 C 0.029 3.971 13 N -0.905 5.905 14 Si 0.948 3.052 15 H -0.273 1.273 16 H -0.279 1.279 17 H -0.274 1.274 18 C -0.056 4.056 19 C -0.119 4.119 20 C -0.131 4.131 21 C -0.141 4.141 22 C -0.132 4.132 23 C -0.129 4.129 24 C -0.123 4.123 25 C -0.122 4.122 26 H 0.054 0.946 27 H 0.118 0.882 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.056 0.944 31 H 0.266 0.734 32 H 0.113 0.887 33 H 0.141 0.859 34 H 0.146 0.854 35 H 0.134 0.866 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.137 3.284 9.477 10.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.243 6.243 3 C 0.351 3.649 4 O -0.439 6.439 5 C -0.169 4.169 6 C 0.037 3.963 7 O -0.300 6.300 8 C 0.187 3.813 9 H 0.042 0.958 10 C -0.573 4.573 11 H 0.064 0.936 12 C -0.173 4.173 13 N -0.543 5.543 14 Si 0.773 3.227 15 H -0.199 1.199 16 H -0.205 1.205 17 H -0.199 1.199 18 C -0.057 4.057 19 C -0.137 4.137 20 C -0.148 4.148 21 C -0.159 4.159 22 C -0.150 4.150 23 C -0.148 4.148 24 C -0.160 4.160 25 C -0.159 4.159 26 H 0.073 0.927 27 H 0.136 0.864 28 H 0.087 0.913 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.131 0.869 33 H 0.158 0.842 34 H 0.164 0.836 35 H 0.152 0.848 36 H 0.120 0.880 37 H 0.127 0.873 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.375 3.449 9.490 10.647 hybrid contribution -0.167 0.054 -1.667 1.676 sum -3.542 3.503 7.823 9.275 Atomic orbital electron populations 1.23466 0.76169 1.04919 1.02093 1.86804 1.23488 1.31778 1.82276 1.22587 0.90577 0.81128 0.70582 1.90571 1.67453 1.37214 1.48653 1.21147 0.87777 0.99638 1.08364 1.21624 0.93418 0.84160 0.97145 1.87843 1.50901 1.17575 1.73655 1.18518 0.92880 0.81454 0.88416 0.95770 1.21581 0.97882 1.45247 0.92603 0.93609 1.25602 0.95024 0.94140 1.02492 1.69987 1.08422 1.42565 1.33348 0.85720 0.78542 0.78033 0.80391 1.19859 1.20465 1.19915 1.20319 0.94345 0.97017 0.93981 1.21011 0.96234 0.97921 0.98520 1.21360 1.00239 0.93313 0.99922 1.21290 0.93367 0.99820 1.01439 1.21278 0.97990 0.96881 0.98811 1.21018 0.99331 0.94738 0.99681 1.23341 1.02240 1.00072 0.90346 1.23273 1.02401 0.90072 1.00162 0.92720 0.86407 0.91259 0.94819 0.92558 0.92462 0.86938 0.84152 0.83597 0.84790 0.88045 0.87260 0.85389 0.85359 0.87042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 10.56 113.37 1.20 1.97 16 2 O -0.33 -12.31 8.32 -44.21 -0.37 -12.68 16 3 C 0.51 18.53 7.48 71.23 0.53 19.06 16 4 O -0.55 -20.77 16.01 21.94 0.35 -20.42 16 5 C -0.17 -5.44 2.54 -52.93 -0.13 -5.57 16 6 C 0.11 4.44 5.86 71.98 0.42 4.86 16 7 O -0.38 -17.35 6.87 -127.21 -0.87 -18.23 16 8 C 0.24 12.33 2.40 29.10 0.07 12.40 16 9 H 0.02 1.34 6.91 -2.38 -0.02 1.32 16 10 C -0.54 -29.50 8.62 25.60 0.22 -29.28 16 11 H 0.05 2.62 7.82 -2.91 -0.02 2.60 16 12 C 0.03 1.55 5.45 84.65 0.46 2.01 16 13 N -0.91 -50.12 12.84 21.45 0.28 -49.84 16 14 Si 0.95 43.47 29.54 68.60 2.03 45.49 16 15 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 16 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 17 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 18 C -0.06 -2.64 4.97 -19.87 -0.10 -2.74 16 19 C -0.12 -4.97 9.36 22.27 0.21 -4.76 16 20 C -0.13 -4.44 10.05 22.27 0.22 -4.22 16 21 C -0.14 -4.51 10.05 22.27 0.22 -4.28 16 22 C -0.13 -4.75 10.05 22.27 0.22 -4.53 16 23 C -0.13 -5.76 9.67 22.27 0.22 -5.54 16 24 C -0.12 -2.89 9.88 30.61 0.30 -2.59 16 25 C -0.12 -2.95 9.76 30.61 0.30 -2.66 16 26 H 0.05 1.56 8.13 -2.39 -0.02 1.54 16 27 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 28 H 0.07 1.73 8.13 -2.39 -0.02 1.71 16 29 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.06 2.03 7.84 -2.39 -0.02 2.01 16 31 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 32 H 0.11 4.77 7.71 -2.91 -0.02 4.75 16 33 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 34 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 35 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 36 H 0.10 4.85 8.05 -2.91 -0.02 4.83 16 37 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.13 2.55 8.05 -2.39 -0.02 2.53 16 39 H 0.13 2.59 8.14 -2.38 -0.02 2.57 16 40 H 0.11 2.67 7.67 -2.39 -0.02 2.66 16 Total: -1.00 -65.98 346.95 6.80 -59.18 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 1.02 Total: 22.37 kcal Atomic # 6 Polarization: -30.24 SS G_CDS: 4.37 Total: -25.87 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: 0.28 Total: -49.84 kcal Atomic # 8 Polarization: -50.44 SS G_CDS: -0.89 Total: -51.33 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -65.98 6.80 -59.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224982431.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.616 kcal (2) G-P(sol) polarization free energy of solvation -65.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds