Wall clock time and date at job start Tue Mar 31 2020 06:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45196 * 109.47392 * 2 1 4 4 C 1.34227 * 117.00464 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99806 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00144 * 179.97438 * 4 3 2 7 7 C 1.53788 * 113.61069 * 179.97438 * 6 4 3 8 8 C 1.53784 * 87.07910 * 219.93523 * 7 6 4 9 9 O 1.42902 * 113.61647 * 270.80204 * 8 7 6 10 10 C 1.35672 * 116.99728 * 200.64841 * 9 8 7 11 11 C 1.39306 * 119.81973 * 353.78595 * 10 9 8 12 12 C 1.36443 * 120.18460 * 179.75870 * 11 10 9 13 13 C 1.40833 * 119.80809 * 0.52014 * 12 11 10 14 14 C 1.41221 * 120.17890 * 179.71955 * 13 12 11 15 15 H 1.07993 * 120.00202 * 206.48378 * 14 13 12 16 16 C 1.39893 * 119.99785 * 26.47881 * 14 13 12 17 17 N 1.30885 * 120.00091 * 11.73491 * 16 14 13 18 18 Si 1.86801 * 120.00018 * 191.73246 * 16 14 13 19 19 H 1.48498 * 109.47091 * 59.99767 * 18 16 14 20 20 H 1.48502 * 109.47071 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47111 * 300.00010 * 18 16 14 22 22 C 1.40826 * 119.64532 * 359.73535 * 13 12 11 23 23 C 1.36441 * 119.81239 * 0.02562 * 22 13 12 24 24 C 1.53779 * 87.17278 * 25.39458 * 8 7 6 25 25 H 1.08998 * 109.47340 * 300.00615 * 1 2 3 26 26 H 1.09008 * 109.46991 * 60.00319 * 1 2 3 27 27 H 1.08998 * 109.47502 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47340 * 239.99385 * 2 1 3 29 29 H 1.09008 * 109.46502 * 119.99480 * 2 1 3 30 30 H 1.08996 * 112.85303 * 311.19935 * 6 4 3 31 31 H 1.09005 * 113.60704 * 105.39188 * 7 6 4 32 32 H 1.08993 * 113.61430 * 334.48893 * 7 6 4 33 33 H 1.08997 * 113.61227 * 139.98286 * 8 7 6 34 34 H 1.08003 * 119.90972 * 0.02762 * 11 10 9 35 35 H 1.08001 * 120.09671 * 180.25952 * 12 11 10 36 36 H 0.97000 * 120.00105 * 180.02562 * 17 16 14 37 37 H 1.07999 * 120.09948 * 179.97438 * 22 13 12 38 38 H 1.07997 * 119.90949 * 179.97438 * 23 22 13 39 39 H 1.08999 * 113.61944 * 89.15888 * 24 8 7 40 40 H 1.09010 * 113.61313 * 220.05873 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4583 2.9680 0.0013 8 6 5.3556 4.1446 0.9862 9 8 5.2833 5.4210 0.3477 10 6 5.6199 6.5029 1.0940 11 6 5.8875 6.3511 2.4527 12 6 6.2315 7.4333 3.2091 13 6 6.3050 8.7080 2.6149 14 6 6.6546 9.8343 3.3918 15 1 6.3157 10.8175 3.1005 16 6 7.4397 9.6765 4.5388 17 7 8.0400 8.5365 4.7691 18 14 7.6314 11.0928 5.7416 19 1 6.2979 11.4776 6.2697 20 1 8.5071 10.6730 6.8651 21 1 8.2421 12.2540 5.0458 22 6 6.0278 8.8535 1.2419 23 6 5.6900 7.7604 0.4985 24 6 3.9843 3.5824 1.3965 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 3.4715 3.5810 -0.7563 31 1 5.8903 3.2410 -0.9615 32 1 5.9123 2.0759 0.4325 33 1 6.0973 4.1119 1.7842 34 1 5.8267 5.3735 2.9076 35 1 6.4428 7.3134 4.2615 36 1 8.5841 8.4269 5.5647 37 1 6.0815 9.8277 0.7788 38 1 5.4766 7.8703 -0.5545 39 1 4.0347 2.8586 2.2099 40 1 3.2281 4.3507 1.5584 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225263382.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:21 Heat of formation + Delta-G solvation = -86.984072 kcal Electronic energy + Delta-G solvation = -22069.143509 eV Core-core repulsion = 18621.808452 eV Total energy + Delta-G solvation = -3447.335057 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.91631 -39.40481 -37.63791 -36.61229 -35.37330 -33.23003 -31.97272 -29.68023 -29.10756 -26.94680 -25.78213 -24.84646 -23.45361 -21.97366 -21.02002 -20.67953 -18.97049 -18.09767 -17.38264 -17.08336 -16.76065 -16.25106 -15.56271 -15.00634 -14.57884 -14.33352 -13.98103 -13.81576 -13.55953 -13.15874 -12.92977 -12.55027 -12.47636 -12.18821 -12.11785 -11.99234 -11.84973 -11.70610 -11.47244 -11.18256 -11.06091 -10.80677 -10.75575 -10.62638 -10.40477 -10.20810 -9.84494 -9.76924 -9.32724 -9.04330 -7.66427 -6.99666 -6.69327 -4.28529 2.08145 2.53548 2.75932 2.96183 3.07430 3.10320 3.20105 3.86232 3.95268 4.32874 4.50423 4.59887 4.64488 4.68042 4.75004 4.86898 4.97538 5.12474 5.40008 5.47726 5.54642 5.63056 5.65972 5.68486 5.82105 5.99325 5.99908 6.09568 6.15215 6.26546 6.30005 6.73315 6.88760 7.06163 7.28715 7.41119 7.55031 7.64975 7.90653 7.99577 8.14990 8.42453 8.64208 8.90169 8.97696 10.24338 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.032804 B = 0.002714 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.346081 B =10313.033970 C =10479.256793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.059 3.941 3 O -0.356 6.356 4 C 0.474 3.526 5 O -0.512 6.512 6 C -0.104 4.104 7 C -0.115 4.115 8 C 0.071 3.929 9 O -0.306 6.306 10 C -0.009 4.009 11 C -0.174 4.174 12 C -0.130 4.130 13 C 0.086 3.914 14 C -0.461 4.461 15 H 0.076 0.924 16 C 0.071 3.929 17 N -0.807 5.807 18 Si 0.911 3.089 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.266 1.266 22 C -0.195 4.195 23 C -0.114 4.114 24 C -0.141 4.141 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.129 0.871 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.126 0.874 36 H 0.279 0.721 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.461 -12.722 -5.368 16.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.015 4.015 3 O -0.273 6.273 4 C 0.317 3.683 5 O -0.399 6.399 6 C -0.123 4.123 7 C -0.152 4.152 8 C 0.013 3.987 9 O -0.221 6.221 10 C -0.052 4.052 11 C -0.193 4.193 12 C -0.150 4.150 13 C 0.083 3.917 14 C -0.491 4.491 15 H 0.094 0.906 16 C -0.144 4.144 17 N -0.434 5.434 18 Si 0.736 3.264 19 H -0.190 1.190 20 H -0.204 1.204 21 H -0.191 1.191 22 C -0.215 4.215 23 C -0.133 4.133 24 C -0.179 4.179 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.147 0.853 31 H 0.105 0.895 32 H 0.124 0.876 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.144 0.856 36 H 0.090 0.910 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.110 0.890 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.162 -13.137 -5.388 16.899 hybrid contribution 0.210 0.272 0.771 0.845 sum -8.952 -12.865 -4.617 16.339 Atomic orbital electron populations 1.21806 0.92637 1.02869 1.03663 1.23018 0.95428 0.80548 1.02470 1.86555 1.24850 1.32070 1.83838 1.23827 0.80282 0.92659 0.71519 1.90636 1.60518 1.43107 1.45686 1.22627 0.97561 0.90015 1.02143 1.23178 0.92443 0.97905 1.01656 1.22886 0.96609 0.83391 0.95853 1.85816 1.84769 1.12235 1.39308 1.18582 1.10192 0.85972 0.90469 1.20650 1.06874 0.98682 0.93054 1.21079 1.01763 0.92049 1.00060 1.17624 0.90058 0.93267 0.90708 1.19453 1.28167 0.94759 1.06747 0.90620 1.25875 0.93760 0.96828 0.97956 1.69791 1.23166 1.25001 1.25395 0.86327 0.79047 0.81484 0.79574 1.18965 1.20436 1.19099 1.20627 1.10228 0.96468 0.94129 1.19612 1.05035 0.90407 0.98205 1.23497 1.00134 1.00232 0.94054 0.91375 0.91435 0.90331 0.91346 0.91319 0.85341 0.89481 0.87554 0.89293 0.88503 0.85588 0.91001 0.88214 0.88519 0.89030 0.89126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.29 37.16 0.38 -0.63 16 2 C 0.06 0.55 6.19 37.16 0.23 0.78 16 3 O -0.36 -4.26 10.22 -39.25 -0.40 -4.66 16 4 C 0.47 6.20 7.49 36.00 0.27 6.47 16 5 O -0.51 -7.71 15.65 -18.75 -0.29 -8.01 16 6 C -0.10 -1.32 4.19 -90.86 -0.38 -1.70 16 7 C -0.11 -1.50 7.24 -25.91 -0.19 -1.69 16 8 C 0.07 1.10 3.62 -25.92 -0.09 1.00 16 9 O -0.31 -5.89 10.05 -18.72 -0.19 -6.07 16 10 C -0.01 -0.21 6.70 -38.78 -0.26 -0.47 16 11 C -0.17 -3.97 8.93 -39.83 -0.36 -4.32 16 12 C -0.13 -3.32 8.63 -39.25 -0.34 -3.66 16 13 C 0.09 2.26 5.58 -106.80 -0.60 1.66 16 14 C -0.46 -12.10 9.06 -37.83 -0.34 -12.45 16 15 H 0.08 1.90 7.87 -52.49 -0.41 1.49 16 16 C 0.07 1.78 5.25 -17.34 -0.09 1.69 16 17 N -0.81 -20.73 10.73 55.55 0.60 -20.14 16 18 Si 0.91 18.64 29.58 -169.99 -5.03 13.62 16 19 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 20 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 22 C -0.19 -4.72 9.74 -39.25 -0.38 -5.10 16 23 C -0.11 -2.58 9.92 -39.83 -0.40 -2.98 16 24 C -0.14 -1.88 7.48 -25.83 -0.19 -2.08 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 27 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 29 H 0.07 0.62 8.13 -51.92 -0.42 0.20 16 30 H 0.13 1.54 8.14 -51.93 -0.42 1.12 16 31 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.11 1.34 7.44 -51.93 -0.39 0.95 16 33 H 0.09 1.42 6.12 -51.93 -0.32 1.10 16 34 H 0.10 1.96 5.96 -52.48 -0.31 1.65 16 35 H 0.13 3.32 6.07 -52.49 -0.32 3.00 16 36 H 0.28 6.57 8.30 -40.82 -0.34 6.24 16 37 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 38 H 0.10 1.97 8.06 -52.49 -0.42 1.54 16 39 H 0.09 1.10 8.10 -51.93 -0.42 0.68 16 40 H 0.09 1.25 8.14 -51.92 -0.42 0.83 16 LS Contribution 338.95 15.07 5.11 5.11 Total: -1.00 -28.79 338.95 -8.47 -37.26 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -5.53 Total: 6.35 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -2.73 Total: -23.46 kcal Atomic # 7 Polarization: -20.73 SS G_CDS: 0.60 Total: -20.14 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.88 Total: -18.74 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.79 -8.47 -37.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225263382.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.723 kcal (2) G-P(sol) polarization free energy of solvation -28.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds