Wall clock time and date at job start Tue Mar 31 2020 06:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45196 * 109.47392 * 2 1 4 4 C 1.34227 * 117.00464 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99806 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00144 * 179.97438 * 4 3 2 7 7 C 1.53788 * 113.61069 * 179.97438 * 6 4 3 8 8 C 1.53784 * 87.07910 * 219.93523 * 7 6 4 9 9 O 1.42902 * 113.61647 * 270.80204 * 8 7 6 10 10 C 1.35672 * 116.99728 * 200.64841 * 9 8 7 11 11 C 1.39306 * 119.81973 * 353.78595 * 10 9 8 12 12 C 1.36443 * 120.18460 * 179.75870 * 11 10 9 13 13 C 1.40833 * 119.80809 * 0.52014 * 12 11 10 14 14 C 1.41221 * 120.17890 * 179.71955 * 13 12 11 15 15 H 1.07993 * 120.00202 * 206.48378 * 14 13 12 16 16 C 1.39893 * 119.99785 * 26.47881 * 14 13 12 17 17 N 1.30885 * 120.00091 * 11.73491 * 16 14 13 18 18 Si 1.86801 * 120.00018 * 191.73246 * 16 14 13 19 19 H 1.48498 * 109.47091 * 59.99767 * 18 16 14 20 20 H 1.48502 * 109.47071 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47111 * 300.00010 * 18 16 14 22 22 C 1.40826 * 119.64532 * 359.73535 * 13 12 11 23 23 C 1.36441 * 119.81239 * 0.02562 * 22 13 12 24 24 C 1.53779 * 87.17278 * 25.39458 * 8 7 6 25 25 H 1.08998 * 109.47340 * 300.00615 * 1 2 3 26 26 H 1.09008 * 109.46991 * 60.00319 * 1 2 3 27 27 H 1.08998 * 109.47502 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47340 * 239.99385 * 2 1 3 29 29 H 1.09008 * 109.46502 * 119.99480 * 2 1 3 30 30 H 1.08996 * 112.85303 * 311.19935 * 6 4 3 31 31 H 1.09005 * 113.60704 * 105.39188 * 7 6 4 32 32 H 1.08993 * 113.61430 * 334.48893 * 7 6 4 33 33 H 1.08997 * 113.61227 * 139.98286 * 8 7 6 34 34 H 1.08003 * 119.90972 * 0.02762 * 11 10 9 35 35 H 1.08001 * 120.09671 * 180.25952 * 12 11 10 36 36 H 0.97000 * 120.00105 * 180.02562 * 17 16 14 37 37 H 1.07999 * 120.09948 * 179.97438 * 22 13 12 38 38 H 1.07997 * 119.90949 * 179.97438 * 23 22 13 39 39 H 1.08999 * 113.61944 * 89.15888 * 24 8 7 40 40 H 1.09010 * 113.61313 * 220.05873 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4583 2.9680 0.0013 8 6 5.3556 4.1446 0.9862 9 8 5.2833 5.4210 0.3477 10 6 5.6199 6.5029 1.0940 11 6 5.8875 6.3511 2.4527 12 6 6.2315 7.4333 3.2091 13 6 6.3050 8.7080 2.6149 14 6 6.6546 9.8343 3.3918 15 1 6.3157 10.8175 3.1005 16 6 7.4397 9.6765 4.5388 17 7 8.0400 8.5365 4.7691 18 14 7.6314 11.0928 5.7416 19 1 6.2979 11.4776 6.2697 20 1 8.5071 10.6730 6.8651 21 1 8.2421 12.2540 5.0458 22 6 6.0278 8.8535 1.2419 23 6 5.6900 7.7604 0.4985 24 6 3.9843 3.5824 1.3965 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 3.4715 3.5810 -0.7563 31 1 5.8903 3.2410 -0.9615 32 1 5.9123 2.0759 0.4325 33 1 6.0973 4.1119 1.7842 34 1 5.8267 5.3735 2.9076 35 1 6.4428 7.3134 4.2615 36 1 8.5841 8.4269 5.5647 37 1 6.0815 9.8277 0.7788 38 1 5.4766 7.8703 -0.5545 39 1 4.0347 2.8586 2.2099 40 1 3.2281 4.3507 1.5584 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225263382.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:21 Heat of formation + Delta-G solvation = -100.421926 kcal Electronic energy + Delta-G solvation = -22069.726218 eV Core-core repulsion = 18621.808452 eV Total energy + Delta-G solvation = -3447.917766 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.98712 -40.77243 -39.14453 -37.76614 -36.82911 -35.04945 -32.64633 -31.52564 -30.93902 -28.10141 -26.90125 -26.61577 -24.34032 -23.28358 -22.80043 -21.98031 -20.31588 -19.31343 -19.11903 -18.40713 -17.72114 -17.38592 -17.14042 -16.41299 -15.96241 -15.75911 -15.46206 -14.99250 -14.81265 -14.53900 -14.18287 -13.84632 -13.63349 -13.57554 -13.49546 -13.28394 -12.96672 -12.89631 -12.79058 -12.70888 -12.49408 -12.32297 -12.08583 -11.73545 -11.64066 -11.54405 -11.41931 -11.24304 -11.02549 -10.82164 -9.52902 -8.84491 -8.54003 -6.22711 0.95675 1.05985 1.08580 1.40799 1.51686 1.54735 1.64731 2.24411 2.45078 2.77205 3.26891 3.42099 3.60835 3.75411 3.79226 3.99096 4.06587 4.09778 4.21893 4.33333 4.44887 4.45923 4.60440 4.71229 4.79660 4.86127 4.90459 4.91149 4.94210 5.05079 5.12745 5.14966 5.18357 5.41658 5.42344 5.57960 5.70304 6.01656 6.10398 6.27010 6.59050 6.66534 6.82055 6.98520 7.12209 8.41273 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.032804 B = 0.002714 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.346081 B =10313.033970 C =10479.256793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.050 3.950 3 O -0.361 6.361 4 C 0.479 3.521 5 O -0.534 6.534 6 C -0.098 4.098 7 C -0.104 4.104 8 C 0.053 3.947 9 O -0.307 6.307 10 C 0.005 3.995 11 C -0.176 4.176 12 C -0.152 4.152 13 C 0.051 3.949 14 C -0.497 4.497 15 H 0.075 0.925 16 C 0.029 3.971 17 N -0.838 5.838 18 Si 0.983 3.017 19 H -0.261 1.261 20 H -0.270 1.270 21 H -0.261 1.261 22 C -0.203 4.203 23 C -0.122 4.122 24 C -0.133 4.133 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.101 0.899 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.137 0.863 31 H 0.092 0.908 32 H 0.114 0.886 33 H 0.084 0.916 34 H 0.120 0.880 35 H 0.110 0.890 36 H 0.285 0.715 37 H 0.109 0.891 38 H 0.122 0.878 39 H 0.106 0.894 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.366 -13.567 -5.752 18.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.023 4.023 3 O -0.278 6.278 4 C 0.324 3.676 5 O -0.424 6.424 6 C -0.117 4.117 7 C -0.141 4.141 8 C -0.005 4.005 9 O -0.223 6.223 10 C -0.039 4.039 11 C -0.194 4.194 12 C -0.171 4.171 13 C 0.049 3.951 14 C -0.527 4.527 15 H 0.093 0.907 16 C -0.183 4.183 17 N -0.466 5.466 18 Si 0.804 3.196 19 H -0.185 1.185 20 H -0.195 1.195 21 H -0.186 1.186 22 C -0.222 4.222 23 C -0.141 4.141 24 C -0.171 4.171 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.120 0.880 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.155 0.845 31 H 0.111 0.889 32 H 0.132 0.868 33 H 0.102 0.898 34 H 0.137 0.863 35 H 0.128 0.872 36 H 0.096 0.904 37 H 0.128 0.872 38 H 0.140 0.860 39 H 0.124 0.876 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.089 -14.000 -5.791 18.203 hybrid contribution 0.414 0.351 0.768 0.941 sum -9.675 -13.649 -5.023 17.468 Atomic orbital electron populations 1.21832 0.90541 1.04394 1.03663 1.23322 0.97095 0.79230 1.02646 1.86548 1.24072 1.33808 1.83366 1.23785 0.80583 0.92375 0.70906 1.90630 1.61083 1.43784 1.46866 1.22575 0.97226 0.90033 1.01840 1.23126 0.93050 0.96708 1.01226 1.23197 0.98080 0.82363 0.96826 1.85810 1.84361 1.12818 1.39301 1.18674 1.08002 0.86952 0.90267 1.20848 1.06135 0.99004 0.93458 1.21044 1.03465 0.92892 0.99744 1.17982 0.91357 0.93877 0.91902 1.19707 1.29753 0.94855 1.08430 0.90689 1.26714 0.92877 0.99541 0.99173 1.69859 1.23732 1.26855 1.26128 0.85234 0.79139 0.78025 0.77169 1.18538 1.19464 1.18558 1.20831 1.10074 0.97634 0.93685 1.19904 1.04523 0.90234 0.99408 1.23450 0.98311 1.00252 0.95074 0.91477 0.91294 0.88049 0.91104 0.91284 0.84523 0.88935 0.86811 0.89794 0.86270 0.87174 0.90447 0.87245 0.85996 0.87563 0.89544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.29 71.98 0.74 -0.88 16 2 C 0.05 0.84 6.19 71.98 0.45 1.29 16 3 O -0.36 -7.98 10.22 -51.38 -0.53 -8.51 16 4 C 0.48 11.65 7.49 71.24 0.53 12.18 16 5 O -0.53 -15.23 15.65 21.97 0.34 -14.88 16 6 C -0.10 -2.26 4.19 -10.95 -0.05 -2.30 16 7 C -0.10 -2.51 7.24 31.12 0.23 -2.29 16 8 C 0.05 1.54 3.62 31.12 0.11 1.66 16 9 O -0.31 -11.30 10.05 -89.90 -0.90 -12.21 16 10 C 0.00 0.21 6.70 22.79 0.15 0.36 16 11 C -0.18 -8.01 8.93 22.11 0.20 -7.81 16 12 C -0.15 -7.95 8.63 22.49 0.19 -7.75 16 13 C 0.05 2.75 5.58 -21.28 -0.12 2.63 16 14 C -0.50 -26.83 9.06 23.40 0.21 -26.61 16 15 H 0.07 3.88 7.87 -2.91 -0.02 3.85 16 16 C 0.03 1.49 5.25 85.23 0.45 1.94 16 17 N -0.84 -44.07 10.73 21.82 0.23 -43.83 16 18 Si 0.98 38.48 29.58 68.60 2.03 40.51 16 19 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 20 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 21 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 22 C -0.20 -9.90 9.74 22.48 0.22 -9.68 16 23 C -0.12 -5.43 9.92 22.11 0.22 -5.21 16 24 C -0.13 -3.29 7.48 31.18 0.23 -3.05 16 25 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.07 1.15 8.13 -2.39 -0.02 1.13 16 29 H 0.07 1.15 8.13 -2.38 -0.02 1.13 16 30 H 0.14 2.96 8.14 -2.39 -0.02 2.94 16 31 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 32 H 0.11 2.63 7.44 -2.39 -0.02 2.62 16 33 H 0.08 2.57 6.12 -2.39 -0.01 2.56 16 34 H 0.12 4.76 5.96 -2.91 -0.02 4.74 16 35 H 0.11 6.04 6.07 -2.91 -0.02 6.02 16 36 H 0.29 13.64 8.30 -92.71 -0.77 12.87 16 37 H 0.11 4.97 8.06 -2.91 -0.02 4.94 16 38 H 0.12 4.73 8.06 -2.91 -0.02 4.70 16 39 H 0.11 2.32 8.10 -2.39 -0.02 2.30 16 40 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 Total: -1.00 -61.99 338.95 5.99 -56.00 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: 1.04 Total: 28.46 kcal Atomic # 6 Polarization: -49.31 SS G_CDS: 3.77 Total: -45.54 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.23 Total: -43.83 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -1.09 Total: -35.60 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.51 kcal Total: -61.99 5.99 -56.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225263382.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.420 kcal (2) G-P(sol) polarization free energy of solvation -61.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds