Wall clock time and date at job start Tue Mar 31 2020 06:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33083 * 1 3 3 C 1.50701 * 120.00197 * 2 1 4 4 C 1.46955 * 119.99757 * 179.97438 * 2 1 3 5 5 O 1.21534 * 120.00090 * 359.73157 * 4 2 1 6 6 O 1.34803 * 119.99838 * 180.02562 * 4 2 1 7 7 C 1.45197 * 117.00153 * 179.72708 * 6 4 2 8 8 C 1.52990 * 109.47477 * 179.97438 * 7 6 4 9 9 H 1.09001 * 109.47708 * 185.00017 * 8 7 6 10 10 C 1.52998 * 109.47573 * 305.00457 * 8 7 6 11 11 O 1.42910 * 109.46975 * 65.00106 * 8 7 6 12 12 C 1.35671 * 117.00180 * 156.39489 * 11 8 7 13 13 C 1.39315 * 119.81639 * 4.97659 * 12 11 8 14 14 C 1.36436 * 120.18326 * 179.76133 * 13 12 11 15 15 C 1.40831 * 119.81377 * 0.50885 * 14 13 12 16 16 C 1.41216 * 120.18121 * 179.72374 * 15 14 13 17 17 H 1.08001 * 119.99669 * 206.50956 * 16 15 14 18 18 C 1.39891 * 120.00083 * 26.50607 * 16 15 14 19 19 N 1.30879 * 119.99968 * 13.19352 * 18 16 15 20 20 Si 1.86800 * 119.99820 * 193.19411 * 18 16 15 21 21 H 1.48493 * 109.47417 * 60.00141 * 20 18 16 22 22 H 1.48502 * 109.46858 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47070 * 299.99856 * 20 18 16 24 24 C 1.40834 * 119.63758 * 359.74491 * 15 14 13 25 25 C 1.36431 * 119.81386 * 359.97438 * 24 15 14 26 26 H 1.08005 * 119.99714 * 0.02562 * 1 2 3 27 27 H 1.07997 * 119.99824 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47142 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46814 * 299.99047 * 3 2 1 30 30 H 1.08994 * 109.47340 * 59.99721 * 3 2 1 31 31 H 1.08999 * 109.47054 * 300.00600 * 7 6 4 32 32 H 1.09000 * 109.46798 * 59.99598 * 7 6 4 33 33 H 1.09004 * 109.46796 * 299.99773 * 10 8 7 34 34 H 1.09001 * 109.46963 * 59.99103 * 10 8 7 35 35 H 1.08996 * 109.47567 * 180.02562 * 10 8 7 36 36 H 1.08000 * 119.90849 * 0.02562 * 13 12 11 37 37 H 1.08003 * 120.09701 * 180.25134 * 14 13 12 38 38 H 0.96997 * 120.00121 * 180.02562 * 19 18 16 39 39 H 1.08005 * 120.09213 * 180.02562 * 24 15 14 40 40 H 1.08002 * 119.90893 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3308 0.0000 0.0000 3 6 2.0844 1.3051 0.0000 4 6 2.0656 -1.2727 0.0006 5 8 1.4579 -2.3252 0.0060 6 8 3.4136 -1.2727 0.0011 7 6 4.0728 -2.5664 0.0078 8 6 5.5895 -2.3660 0.0067 9 1 6.0839 -3.3338 -0.0778 10 6 5.9868 -1.4850 -1.1794 11 8 5.9872 -1.7328 1.2246 12 6 7.2718 -1.9134 1.6218 13 6 8.1612 -2.6007 0.7988 14 6 9.4560 -2.7823 1.1887 15 6 9.8897 -2.2822 2.4317 16 6 11.2267 -2.4708 2.8455 17 1 11.4680 -2.4940 3.8980 18 6 12.2384 -2.6278 1.8923 19 7 12.0031 -2.3464 0.6359 20 14 13.9252 -3.2390 2.4126 21 1 13.7966 -4.5860 3.0243 22 1 14.8116 -3.3173 1.2237 23 1 14.5084 -2.2990 3.4033 24 6 8.9827 -1.5931 3.2600 25 6 7.6929 -1.4150 2.8527 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 3.1560 1.1059 -0.0005 29 1 1.8212 1.8766 -0.8901 30 1 1.8211 1.8767 0.8899 31 1 3.7795 -3.1190 0.9004 32 1 3.7802 -3.1278 -0.8795 33 1 5.6835 -1.9680 -2.1083 34 1 5.4924 -0.5173 -1.0948 35 1 7.0674 -1.3427 -1.1804 36 1 7.8260 -2.9871 -0.1523 37 1 10.1454 -3.3119 0.5478 38 1 12.7045 -2.4556 -0.0251 39 1 9.3076 -1.2061 4.2145 40 1 6.9959 -0.8872 3.4868 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225265339.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:34 Heat of formation + Delta-G solvation = -91.955695 kcal Electronic energy + Delta-G solvation = -22279.225195 eV Core-core repulsion = 18831.674552 eV Total energy + Delta-G solvation = -3447.550642 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.49550 -39.04380 -37.01990 -36.17702 -34.86278 -33.44177 -31.98831 -29.65579 -28.93730 -27.55642 -27.01525 -24.92759 -24.04463 -21.98765 -21.01818 -19.85263 -19.58297 -17.60251 -17.32474 -16.94352 -16.51256 -16.31635 -15.35758 -14.71424 -14.58715 -14.00138 -13.96476 -13.66423 -13.52412 -13.21796 -13.08907 -12.60568 -12.57669 -12.45241 -12.07649 -11.84456 -11.72624 -11.54477 -11.44460 -11.09921 -10.96256 -10.89489 -10.66306 -10.59324 -10.45859 -9.86957 -9.78540 -9.72236 -9.34094 -9.04472 -7.65229 -6.97942 -6.69097 -4.26592 0.92960 2.61429 2.77635 2.80728 2.96813 3.07734 3.10773 3.21664 3.95426 3.97419 4.51427 4.63659 4.64541 4.84027 5.09038 5.12355 5.29885 5.37799 5.42928 5.47245 5.61651 5.68125 5.70677 5.86494 5.95330 6.09408 6.10871 6.20218 6.28272 6.36198 6.50664 6.72703 6.89387 7.07353 7.29481 7.41564 7.56182 7.67147 7.90817 8.00511 8.16018 8.44492 8.65384 8.91168 8.99194 10.25137 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.039770 B = 0.002847 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.886665 B = 9832.081131 C =10006.568905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.152 4.152 3 C -0.120 4.120 4 C 0.497 3.503 5 O -0.517 6.517 6 O -0.334 6.334 7 C 0.076 3.924 8 C 0.091 3.909 9 H 0.088 0.912 10 C -0.176 4.176 11 O -0.316 6.316 12 C -0.006 4.006 13 C -0.178 4.178 14 C -0.130 4.130 15 C 0.086 3.914 16 C -0.463 4.463 17 H 0.075 0.925 18 C 0.073 3.927 19 N -0.806 5.806 20 Si 0.910 3.090 21 H -0.265 1.265 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.194 4.194 25 C -0.115 4.115 26 H 0.123 0.877 27 H 0.116 0.884 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.124 0.876 38 H 0.279 0.721 39 H 0.099 0.901 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.181 3.421 -4.557 16.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.153 4.153 3 C -0.176 4.176 4 C 0.343 3.657 5 O -0.408 6.408 6 O -0.249 6.249 7 C 0.003 3.997 8 C 0.034 3.966 9 H 0.105 0.895 10 C -0.234 4.234 11 O -0.232 6.232 12 C -0.049 4.049 13 C -0.196 4.196 14 C -0.149 4.149 15 C 0.084 3.916 16 C -0.493 4.493 17 H 0.094 0.906 18 C -0.143 4.143 19 N -0.433 5.433 20 Si 0.734 3.266 21 H -0.190 1.190 22 H -0.204 1.204 23 H -0.191 1.191 24 C -0.213 4.213 25 C -0.133 4.133 26 H 0.141 0.859 27 H 0.134 0.866 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.115 0.885 37 H 0.142 0.858 38 H 0.090 0.910 39 H 0.117 0.883 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.313 3.212 -4.688 16.334 hybrid contribution 0.936 -0.532 -0.069 1.078 sum -14.378 2.680 -4.757 15.379 Atomic orbital electron populations 1.24704 0.94219 1.03780 0.91078 1.21055 0.94679 0.92964 1.06595 1.20836 1.01649 0.92767 1.02374 1.21477 0.81557 0.89997 0.72692 1.90837 1.69664 1.33796 1.46504 1.86646 1.19836 1.35234 1.83221 1.23264 0.90993 0.82436 1.03053 1.22182 0.90938 0.97568 0.85960 0.89460 1.22300 1.03301 1.01146 0.96639 1.85938 1.27310 1.71243 1.38741 1.18587 0.82654 1.07396 0.96245 1.20661 0.95402 1.04667 0.98919 1.21020 0.93374 1.01808 0.98717 1.17606 0.92907 0.89538 0.91595 1.19439 0.91527 1.44189 0.94149 0.90639 1.25860 1.01032 0.92900 0.94526 1.69798 1.34976 1.36136 1.02379 0.86349 0.81024 0.80296 0.78893 1.18978 1.20449 1.19106 1.20619 0.93478 1.05767 1.01482 1.19609 0.96162 1.03490 0.94076 0.85857 0.86568 0.89989 0.91016 0.90870 0.90335 0.89779 0.92181 0.91174 0.91009 0.88499 0.85820 0.91025 0.88252 0.88571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 13.96 28.94 0.40 -0.39 16 2 C -0.15 -1.57 6.00 -102.89 -0.62 -2.18 16 3 C -0.12 -1.04 10.04 36.01 0.36 -0.68 16 4 C 0.50 6.82 7.88 34.26 0.27 7.09 16 5 O -0.52 -8.14 16.01 -19.29 -0.31 -8.45 16 6 O -0.33 -4.86 8.29 -43.56 -0.36 -5.22 16 7 C 0.08 1.08 5.34 37.15 0.20 1.28 16 8 C 0.09 1.45 2.64 -26.74 -0.07 1.38 16 9 H 0.09 1.35 6.36 -51.93 -0.33 1.02 16 10 C -0.18 -2.60 8.94 37.16 0.33 -2.27 16 11 O -0.32 -6.37 9.76 -22.28 -0.22 -6.59 16 12 C -0.01 -0.13 6.61 -38.78 -0.26 -0.39 16 13 C -0.18 -4.07 8.11 -39.83 -0.32 -4.39 16 14 C -0.13 -3.32 8.62 -39.25 -0.34 -3.66 16 15 C 0.09 2.27 5.57 -106.80 -0.59 1.68 16 16 C -0.46 -12.24 9.05 -37.83 -0.34 -12.58 16 17 H 0.08 1.91 7.88 -52.49 -0.41 1.50 16 18 C 0.07 1.82 5.22 -17.34 -0.09 1.73 16 19 N -0.81 -20.79 10.81 55.54 0.60 -20.19 16 20 Si 0.91 18.73 29.58 -169.99 -5.03 13.70 16 21 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 24 C -0.19 -4.76 9.74 -39.25 -0.38 -5.14 16 25 C -0.11 -2.65 9.92 -39.84 -0.40 -3.05 16 26 H 0.12 0.59 8.06 -52.48 -0.42 0.17 16 27 H 0.12 0.97 7.49 -52.49 -0.39 0.58 16 28 H 0.08 0.86 7.16 -51.93 -0.37 0.49 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.04 7.55 -51.93 -0.39 0.64 16 35 H 0.07 1.19 6.77 -51.93 -0.35 0.84 16 36 H 0.10 1.95 5.35 -52.49 -0.28 1.67 16 37 H 0.12 3.26 6.13 -52.48 -0.32 2.94 16 38 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 39 H 0.10 2.27 8.06 -52.48 -0.42 1.85 16 40 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 341.27 15.07 5.14 5.14 Total: -1.00 -29.67 341.27 -7.39 -37.06 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -5.37 Total: 6.11 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -1.85 Total: -21.57 kcal Atomic # 7 Polarization: -20.79 SS G_CDS: 0.60 Total: -20.19 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.89 Total: -20.26 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.67 -7.39 -37.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225265339.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.900 kcal (2) G-P(sol) polarization free energy of solvation -29.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds