Wall clock time and date at job start Tue Mar 31 2020 06:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33083 * 1 3 3 C 1.50701 * 120.00197 * 2 1 4 4 C 1.46955 * 119.99757 * 179.97438 * 2 1 3 5 5 O 1.21534 * 120.00090 * 359.73157 * 4 2 1 6 6 O 1.34803 * 119.99838 * 180.02562 * 4 2 1 7 7 C 1.45197 * 117.00153 * 179.72708 * 6 4 2 8 8 C 1.52990 * 109.47477 * 179.97438 * 7 6 4 9 9 H 1.09001 * 109.47708 * 185.00017 * 8 7 6 10 10 C 1.52998 * 109.47573 * 305.00457 * 8 7 6 11 11 O 1.42910 * 109.46975 * 65.00106 * 8 7 6 12 12 C 1.35671 * 117.00180 * 156.39489 * 11 8 7 13 13 C 1.39315 * 119.81639 * 4.97659 * 12 11 8 14 14 C 1.36436 * 120.18326 * 179.76133 * 13 12 11 15 15 C 1.40831 * 119.81377 * 0.50885 * 14 13 12 16 16 C 1.41216 * 120.18121 * 179.72374 * 15 14 13 17 17 H 1.08001 * 119.99669 * 206.50956 * 16 15 14 18 18 C 1.39891 * 120.00083 * 26.50607 * 16 15 14 19 19 N 1.30879 * 119.99968 * 13.19352 * 18 16 15 20 20 Si 1.86800 * 119.99820 * 193.19411 * 18 16 15 21 21 H 1.48493 * 109.47417 * 60.00141 * 20 18 16 22 22 H 1.48502 * 109.46858 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47070 * 299.99856 * 20 18 16 24 24 C 1.40834 * 119.63758 * 359.74491 * 15 14 13 25 25 C 1.36431 * 119.81386 * 359.97438 * 24 15 14 26 26 H 1.08005 * 119.99714 * 0.02562 * 1 2 3 27 27 H 1.07997 * 119.99824 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47142 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46814 * 299.99047 * 3 2 1 30 30 H 1.08994 * 109.47340 * 59.99721 * 3 2 1 31 31 H 1.08999 * 109.47054 * 300.00600 * 7 6 4 32 32 H 1.09000 * 109.46798 * 59.99598 * 7 6 4 33 33 H 1.09004 * 109.46796 * 299.99773 * 10 8 7 34 34 H 1.09001 * 109.46963 * 59.99103 * 10 8 7 35 35 H 1.08996 * 109.47567 * 180.02562 * 10 8 7 36 36 H 1.08000 * 119.90849 * 0.02562 * 13 12 11 37 37 H 1.08003 * 120.09701 * 180.25134 * 14 13 12 38 38 H 0.96997 * 120.00121 * 180.02562 * 19 18 16 39 39 H 1.08005 * 120.09213 * 180.02562 * 24 15 14 40 40 H 1.08002 * 119.90893 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3308 0.0000 0.0000 3 6 2.0844 1.3051 0.0000 4 6 2.0656 -1.2727 0.0006 5 8 1.4579 -2.3252 0.0060 6 8 3.4136 -1.2727 0.0011 7 6 4.0728 -2.5664 0.0078 8 6 5.5895 -2.3660 0.0067 9 1 6.0839 -3.3338 -0.0778 10 6 5.9868 -1.4850 -1.1794 11 8 5.9872 -1.7328 1.2246 12 6 7.2718 -1.9134 1.6218 13 6 8.1612 -2.6007 0.7988 14 6 9.4560 -2.7823 1.1887 15 6 9.8897 -2.2822 2.4317 16 6 11.2267 -2.4708 2.8455 17 1 11.4680 -2.4940 3.8980 18 6 12.2384 -2.6278 1.8923 19 7 12.0031 -2.3464 0.6359 20 14 13.9252 -3.2390 2.4126 21 1 13.7966 -4.5860 3.0243 22 1 14.8116 -3.3173 1.2237 23 1 14.5084 -2.2990 3.4033 24 6 8.9827 -1.5931 3.2600 25 6 7.6929 -1.4150 2.8527 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 3.1560 1.1059 -0.0005 29 1 1.8212 1.8766 -0.8901 30 1 1.8211 1.8767 0.8899 31 1 3.7795 -3.1190 0.9004 32 1 3.7802 -3.1278 -0.8795 33 1 5.6835 -1.9680 -2.1083 34 1 5.4924 -0.5173 -1.0948 35 1 7.0674 -1.3427 -1.1804 36 1 7.8260 -2.9871 -0.1523 37 1 10.1454 -3.3119 0.5478 38 1 12.7045 -2.4556 -0.0251 39 1 9.3076 -1.2061 4.2145 40 1 6.9959 -0.8872 3.4868 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225265339.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:34 Heat of formation + Delta-G solvation = -106.631189 kcal Electronic energy + Delta-G solvation = -22279.861572 eV Core-core repulsion = 18831.674552 eV Total energy + Delta-G solvation = -3448.187020 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.58620 -40.66008 -38.53755 -37.54346 -35.64482 -35.26575 -33.38143 -31.52029 -30.79126 -28.38400 -27.99626 -26.76287 -25.07706 -23.56102 -22.85400 -21.38704 -20.55280 -19.27444 -18.88530 -18.19489 -17.64509 -17.42597 -16.98038 -16.21415 -16.01314 -15.76417 -15.14577 -14.83243 -14.54118 -14.51165 -14.28804 -14.10534 -13.76611 -13.74067 -13.47593 -13.28961 -13.18436 -12.97959 -12.74677 -12.61324 -12.48511 -12.36506 -12.10761 -11.80924 -11.63678 -11.55608 -11.50000 -11.15939 -10.88068 -10.40111 -9.54356 -8.86213 -8.55483 -6.22930 0.12942 0.95037 1.06533 1.40211 1.50950 1.54173 1.63764 1.89697 2.23942 2.49631 2.75760 3.54462 3.66025 3.71626 3.89596 3.98654 4.11377 4.22271 4.33576 4.40035 4.44038 4.53081 4.67390 4.79126 4.85736 4.85799 4.94952 5.04208 5.08959 5.16691 5.23046 5.26037 5.35669 5.40085 5.54424 5.55388 5.68277 5.99333 6.08440 6.25433 6.57406 6.63937 6.80700 6.97402 7.11159 8.40397 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.039770 B = 0.002847 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.886665 B = 9832.081131 C =10006.568905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.184 4.184 3 C -0.113 4.113 4 C 0.492 3.508 5 O -0.547 6.547 6 O -0.344 6.344 7 C 0.079 3.921 8 C 0.083 3.917 9 H 0.094 0.906 10 C -0.170 4.170 11 O -0.325 6.325 12 C 0.006 3.994 13 C -0.176 4.176 14 C -0.150 4.150 15 C 0.052 3.948 16 C -0.499 4.499 17 H 0.074 0.926 18 C 0.031 3.969 19 N -0.836 5.836 20 Si 0.983 3.017 21 H -0.262 1.262 22 H -0.269 1.269 23 H -0.261 1.261 24 C -0.203 4.203 25 C -0.125 4.125 26 H 0.162 0.838 27 H 0.110 0.890 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.122 0.878 37 H 0.110 0.890 38 H 0.286 0.714 39 H 0.108 0.892 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.538 3.966 -5.161 17.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.185 4.185 3 C -0.169 4.169 4 C 0.340 3.660 5 O -0.440 6.440 6 O -0.260 6.260 7 C 0.005 3.995 8 C 0.027 3.973 9 H 0.112 0.888 10 C -0.227 4.227 11 O -0.241 6.241 12 C -0.038 4.038 13 C -0.194 4.194 14 C -0.170 4.170 15 C 0.050 3.950 16 C -0.529 4.529 17 H 0.092 0.908 18 C -0.182 4.182 19 N -0.464 5.464 20 Si 0.804 3.196 21 H -0.186 1.186 22 H -0.194 1.194 23 H -0.186 1.186 24 C -0.222 4.222 25 C -0.143 4.143 26 H 0.180 0.820 27 H 0.128 0.872 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.126 0.874 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.140 0.860 37 H 0.128 0.872 38 H 0.096 0.904 39 H 0.126 0.874 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.692 3.771 -5.297 17.914 hybrid contribution 1.101 -0.662 0.067 1.286 sum -15.591 3.110 -5.230 16.737 Atomic orbital electron populations 1.25060 0.93261 1.05314 0.86734 1.21165 0.95419 0.91937 1.09963 1.20799 0.99911 0.92312 1.03921 1.22181 0.81074 0.91041 0.71670 1.90815 1.69856 1.35021 1.48277 1.86651 1.20696 1.35195 1.83417 1.23219 0.89629 0.82728 1.03929 1.22494 0.92306 0.97783 0.84712 0.88828 1.22244 1.01824 1.01210 0.97471 1.85935 1.25696 1.71698 1.40782 1.18681 0.83608 1.05740 0.95792 1.20852 0.94477 1.04188 0.99917 1.20997 0.94342 1.02883 0.98786 1.17961 0.93736 0.90678 0.92583 1.19693 0.92365 1.46311 0.94566 0.90751 1.26698 1.04753 0.92391 0.94311 1.69859 1.36492 1.36623 1.03384 0.85244 0.76021 0.79617 0.78747 1.18598 1.19352 1.18570 1.20803 0.93958 1.05672 1.01775 1.19880 0.96095 1.03556 0.94791 0.82026 0.87188 0.92348 0.89115 0.89693 0.91017 0.87377 0.89083 0.91358 0.93029 0.86001 0.87226 0.90381 0.87357 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 13.96 66.66 0.93 0.08 16 2 C -0.18 -3.44 6.00 -18.73 -0.11 -3.55 16 3 C -0.11 -1.73 10.04 71.24 0.71 -1.02 16 4 C 0.49 13.06 7.88 70.11 0.55 13.61 16 5 O -0.55 -16.85 16.01 19.72 0.32 -16.53 16 6 O -0.34 -9.71 8.29 -54.49 -0.45 -10.16 16 7 C 0.08 2.13 5.34 71.98 0.38 2.52 16 8 C 0.08 2.56 2.64 30.59 0.08 2.64 16 9 H 0.09 2.77 6.36 -2.39 -0.02 2.75 16 10 C -0.17 -4.78 8.94 71.98 0.64 -4.14 16 11 O -0.32 -12.84 9.76 -86.47 -0.84 -13.69 16 12 C 0.01 0.25 6.61 22.79 0.15 0.40 16 13 C -0.18 -8.08 8.11 22.11 0.18 -7.90 16 14 C -0.15 -7.92 8.62 22.48 0.19 -7.72 16 15 C 0.05 2.86 5.57 -21.28 -0.12 2.75 16 16 C -0.50 -27.15 9.05 23.40 0.21 -26.94 16 17 H 0.07 3.89 7.88 -2.91 -0.02 3.87 16 18 C 0.03 1.59 5.22 85.24 0.44 2.04 16 19 N -0.84 -43.99 10.81 21.82 0.24 -43.75 16 20 Si 0.98 38.61 29.58 68.60 2.03 40.64 16 21 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 22 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 23 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 24 C -0.20 -10.12 9.74 22.48 0.22 -9.90 16 25 C -0.12 -5.76 9.92 22.11 0.22 -5.54 16 26 H 0.16 0.79 8.06 -2.91 -0.02 0.77 16 27 H 0.11 1.58 7.49 -2.91 -0.02 1.55 16 28 H 0.06 1.17 7.16 -2.39 -0.02 1.16 16 29 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 2.03 8.14 -2.39 -0.02 2.02 16 32 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 34 H 0.07 1.94 7.55 -2.39 -0.02 1.92 16 35 H 0.05 1.66 6.77 -2.39 -0.02 1.64 16 36 H 0.12 4.85 5.35 -2.91 -0.02 4.83 16 37 H 0.11 6.00 6.13 -2.91 -0.02 5.98 16 38 H 0.29 13.65 8.30 -92.71 -0.77 12.88 16 39 H 0.11 5.04 8.06 -2.91 -0.02 5.02 16 40 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -65.52 341.27 7.02 -58.50 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: 1.04 Total: 27.66 kcal Atomic # 6 Polarization: -47.36 SS G_CDS: 4.69 Total: -42.67 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.24 Total: -43.75 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -0.98 Total: -40.38 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Total: -65.52 7.02 -58.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225265339.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.127 kcal (2) G-P(sol) polarization free energy of solvation -65.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds