Wall clock time and date at job start Tue Mar 31 2020 06:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33082 * 1 3 3 C 1.50696 * 120.00195 * 2 1 4 4 C 1.46956 * 119.99871 * 179.97438 * 2 1 3 5 5 O 1.21537 * 120.00225 * 0.02562 * 4 2 1 6 6 O 1.34801 * 119.99837 * 180.02562 * 4 2 1 7 7 C 1.45197 * 116.99733 * 180.02562 * 6 4 2 8 8 C 1.53006 * 109.46984 * 179.97438 * 7 6 4 9 9 H 1.08996 * 109.47006 * 174.99549 * 8 7 6 10 10 C 1.52999 * 109.46826 * 54.99702 * 8 7 6 11 11 O 1.42898 * 109.47096 * 294.99760 * 8 7 6 12 12 C 1.35670 * 117.00074 * 204.37435 * 11 8 7 13 13 C 1.39318 * 119.81909 * 355.81106 * 12 11 8 14 14 C 1.36432 * 120.18642 * 180.25867 * 13 12 11 15 15 C 1.40829 * 119.81087 * 359.47803 * 14 13 12 16 16 C 1.41217 * 120.18136 * 180.29966 * 15 14 13 17 17 H 1.08007 * 119.99431 * 334.54556 * 16 15 14 18 18 C 1.39886 * 120.00296 * 154.55090 * 16 15 14 19 19 N 1.30876 * 120.00127 * 342.67142 * 18 16 15 20 20 Si 1.86799 * 120.00000 * 162.68084 * 18 16 15 21 21 H 1.48503 * 109.47396 * 94.72349 * 20 18 16 22 22 H 1.48503 * 109.46975 * 214.71989 * 20 18 16 23 23 H 1.48505 * 109.47246 * 334.72053 * 20 18 16 24 24 C 1.40838 * 119.64308 * 0.27142 * 15 14 13 25 25 C 1.36432 * 119.81016 * 0.02562 * 24 15 14 26 26 H 1.08002 * 119.99887 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.00136 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46914 * 240.00267 * 3 2 1 29 29 H 1.09006 * 109.47077 * 359.97438 * 3 2 1 30 30 H 1.08997 * 109.47533 * 119.99786 * 3 2 1 31 31 H 1.09003 * 109.47845 * 59.99776 * 7 6 4 32 32 H 1.09001 * 109.47054 * 299.99425 * 7 6 4 33 33 H 1.09001 * 109.47483 * 60.00197 * 10 8 7 34 34 H 1.09005 * 109.46515 * 180.02562 * 10 8 7 35 35 H 1.08996 * 109.47204 * 299.99726 * 10 8 7 36 36 H 1.08003 * 119.90671 * 0.03807 * 13 12 11 37 37 H 1.08005 * 120.09539 * 179.74668 * 14 13 12 38 38 H 0.97002 * 120.00229 * 180.02562 * 19 18 16 39 39 H 1.08001 * 120.09432 * 180.02562 * 24 15 14 40 40 H 1.07997 * 119.90745 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3308 0.0000 0.0000 3 6 2.0843 1.3050 0.0000 4 6 2.0656 -1.2727 0.0006 5 8 1.4579 -2.3252 0.0006 6 8 3.4136 -1.2727 0.0011 7 6 4.0727 -2.5664 0.0011 8 6 5.5896 -2.3660 0.0010 9 1 6.0839 -3.3333 0.0907 10 6 5.9867 -1.4789 1.1827 11 8 5.9872 -1.7391 -1.2200 12 6 7.2673 -1.9349 -1.6245 13 6 8.1492 -2.6454 -0.8131 14 6 9.4396 -2.8422 -1.2101 15 6 9.8761 -2.3343 -2.4490 16 6 11.2083 -2.5389 -2.8705 17 1 11.9875 -2.6978 -2.1396 18 6 11.5187 -2.5358 -4.2345 19 7 10.5687 -2.6846 -5.1222 20 14 13.2894 -2.3193 -4.7889 21 1 13.9060 -3.6524 -5.0079 22 1 13.3202 -1.5455 -6.0560 23 1 14.0496 -1.5880 -3.7436 24 6 8.9768 -1.6217 -3.2656 25 6 7.6914 -1.4285 -2.8511 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 2.7110 1.3627 -0.8900 29 1 1.3760 2.1336 -0.0005 30 1 2.7110 1.3628 0.8900 31 1 3.7802 -3.1234 -0.8891 32 1 3.7795 -3.1236 0.8909 33 1 5.6834 -1.9570 2.1141 34 1 7.0673 -1.3357 1.1823 35 1 5.4924 -0.5116 1.0930 36 1 7.8115 -3.0385 0.1345 37 1 10.1232 -3.3897 -0.5781 38 1 10.7839 -2.6828 -6.0680 39 1 9.3037 -1.2294 -4.2173 40 1 7.0005 -0.8819 -3.4759 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225265340.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:37 Heat of formation + Delta-G solvation = -92.133359 kcal Electronic energy + Delta-G solvation = -22231.434752 eV Core-core repulsion = 18783.876406 eV Total energy + Delta-G solvation = -3447.558346 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.49172 -39.05022 -37.02541 -36.18327 -34.87366 -33.41970 -32.05940 -29.56878 -29.02811 -27.54035 -27.04248 -24.92334 -24.06962 -22.10960 -20.78117 -20.00865 -19.60158 -17.61249 -17.36854 -16.97612 -16.43015 -16.29769 -15.23477 -14.89498 -14.60007 -14.00794 -13.93367 -13.63655 -13.54147 -13.28165 -13.07309 -12.65456 -12.51465 -12.42270 -12.14726 -11.88910 -11.84517 -11.56870 -11.30130 -11.18964 -11.03176 -10.77683 -10.65807 -10.60511 -10.46685 -9.95697 -9.78204 -9.72965 -9.32897 -9.02590 -7.64361 -7.01637 -6.71864 -4.25482 0.94254 2.62484 2.78028 2.80293 2.94791 3.08674 3.12591 3.21035 3.94222 3.98006 4.46650 4.62370 4.63828 4.82338 5.07231 5.13188 5.25873 5.33331 5.43592 5.49281 5.60562 5.67885 5.71100 5.82530 5.95912 6.04288 6.05598 6.14832 6.22990 6.35232 6.44917 6.73693 6.97863 7.11440 7.18987 7.46264 7.55797 7.67048 7.78904 8.00687 8.20324 8.45178 8.65428 8.90243 8.98732 10.22860 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.034710 B = 0.002853 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.497576 B = 9810.780306 C =10099.398637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.153 4.153 3 C -0.113 4.113 4 C 0.497 3.503 5 O -0.517 6.517 6 O -0.333 6.333 7 C 0.075 3.925 8 C 0.090 3.910 9 H 0.088 0.912 10 C -0.175 4.175 11 O -0.315 6.315 12 C -0.007 4.007 13 C -0.169 4.169 14 C -0.197 4.197 15 C 0.088 3.912 16 C -0.464 4.464 17 H 0.076 0.924 18 C 0.075 3.925 19 N -0.800 5.800 20 Si 0.906 3.094 21 H -0.272 1.272 22 H -0.276 1.276 23 H -0.261 1.261 24 C -0.132 4.132 25 C -0.119 4.119 26 H 0.123 0.877 27 H 0.116 0.884 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.280 0.720 39 H 0.125 0.875 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.606 5.144 8.714 16.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.154 4.154 3 C -0.170 4.170 4 C 0.343 3.657 5 O -0.407 6.407 6 O -0.249 6.249 7 C 0.001 3.999 8 C 0.032 3.968 9 H 0.105 0.895 10 C -0.232 4.232 11 O -0.231 6.231 12 C -0.050 4.050 13 C -0.188 4.188 14 C -0.217 4.217 15 C 0.086 3.914 16 C -0.494 4.494 17 H 0.094 0.906 18 C -0.142 4.142 19 N -0.426 5.426 20 Si 0.731 3.269 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.185 1.185 24 C -0.152 4.152 25 C -0.138 4.138 26 H 0.141 0.859 27 H 0.134 0.866 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.142 0.858 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.901 4.900 8.359 16.945 hybrid contribution 0.879 -0.393 -0.205 0.984 sum -13.022 4.507 8.154 16.012 Atomic orbital electron populations 1.24731 0.94058 1.03781 0.91209 1.21043 0.94713 0.92996 1.06623 1.20802 1.00219 0.92187 1.03792 1.21483 0.81541 0.89969 0.72714 1.90841 1.69670 1.33758 1.46472 1.86668 1.19814 1.35190 1.83206 1.23270 0.91019 0.82500 1.03070 1.22186 0.91020 0.97610 0.85947 0.89477 1.22278 1.03039 1.01215 0.96697 1.85961 1.27817 1.70950 1.38366 1.18595 0.82851 1.07154 0.96444 1.20428 0.95276 1.04088 0.98994 1.20570 0.94640 1.06530 0.99943 1.17594 0.93463 0.89548 0.90795 1.19453 0.94055 1.44030 0.91866 0.90589 1.25867 0.99267 0.92313 0.96744 1.69830 1.34437 1.35540 1.02790 0.86338 0.82671 0.79142 0.78776 1.19693 1.20091 1.18523 1.20959 0.92138 1.00855 1.01225 1.19833 0.96716 1.03430 0.93856 0.85853 0.86603 0.90351 0.91358 0.90725 0.90303 0.89809 0.92193 0.91250 0.91122 0.88572 0.88753 0.90958 0.85778 0.88528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 13.92 28.94 0.40 -0.39 16 2 C -0.15 -1.57 6.00 -102.89 -0.62 -2.19 16 3 C -0.11 -0.97 9.75 36.00 0.35 -0.62 16 4 C 0.50 6.82 7.88 34.26 0.27 7.09 16 5 O -0.52 -8.17 16.01 -19.29 -0.31 -8.48 16 6 O -0.33 -4.83 8.89 -43.55 -0.39 -5.22 16 7 C 0.08 1.06 5.34 37.16 0.20 1.26 16 8 C 0.09 1.41 2.64 -26.73 -0.07 1.34 16 9 H 0.09 1.33 6.26 -51.93 -0.33 1.00 16 10 C -0.17 -2.44 8.97 37.16 0.33 -2.11 16 11 O -0.31 -6.36 9.76 -22.28 -0.22 -6.58 16 12 C -0.01 -0.17 6.62 -38.78 -0.26 -0.42 16 13 C -0.17 -3.73 8.15 -39.83 -0.32 -4.06 16 14 C -0.20 -4.78 9.74 -39.25 -0.38 -5.16 16 15 C 0.09 2.34 5.57 -106.80 -0.59 1.75 16 16 C -0.46 -12.27 9.04 -37.83 -0.34 -12.62 16 17 H 0.08 1.93 7.90 -52.48 -0.41 1.52 16 18 C 0.07 1.88 5.14 -17.34 -0.09 1.79 16 19 N -0.80 -20.72 10.98 55.54 0.61 -20.11 16 20 Si 0.91 18.66 29.59 -169.99 -5.03 13.63 16 21 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 23 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 24 C -0.13 -3.44 8.64 -39.25 -0.34 -3.78 16 25 C -0.12 -2.88 9.92 -39.83 -0.40 -3.28 16 26 H 0.12 0.59 7.87 -52.49 -0.41 0.18 16 27 H 0.12 0.97 7.49 -52.48 -0.39 0.58 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.42 7.81 -51.93 -0.41 0.01 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.07 1.05 6.92 -51.93 -0.36 0.69 16 35 H 0.07 1.00 7.55 -51.93 -0.39 0.60 16 36 H 0.10 1.82 5.42 -52.48 -0.28 1.53 16 37 H 0.09 2.14 8.06 -52.48 -0.42 1.72 16 38 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 39 H 0.12 3.31 6.20 -52.49 -0.33 2.98 16 40 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 LS Contribution 342.41 15.07 5.16 5.16 Total: -1.00 -29.83 342.41 -7.44 -37.27 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.41 Total: 5.71 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -1.86 Total: -21.39 kcal Atomic # 7 Polarization: -20.72 SS G_CDS: 0.61 Total: -20.11 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.91 Total: -20.27 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.83 -7.44 -37.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225265340.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.866 kcal (2) G-P(sol) polarization free energy of solvation -29.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds