Wall clock time and date at job start Tue Mar 31 2020 06:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33082 * 1 3 3 C 1.50696 * 120.00195 * 2 1 4 4 C 1.46956 * 119.99871 * 179.97438 * 2 1 3 5 5 O 1.21537 * 120.00225 * 0.02562 * 4 2 1 6 6 O 1.34801 * 119.99837 * 180.02562 * 4 2 1 7 7 C 1.45197 * 116.99733 * 180.02562 * 6 4 2 8 8 C 1.53006 * 109.46984 * 179.97438 * 7 6 4 9 9 H 1.08996 * 109.47006 * 174.99549 * 8 7 6 10 10 C 1.52999 * 109.46826 * 54.99702 * 8 7 6 11 11 O 1.42898 * 109.47096 * 294.99760 * 8 7 6 12 12 C 1.35670 * 117.00074 * 204.37435 * 11 8 7 13 13 C 1.39318 * 119.81909 * 355.81106 * 12 11 8 14 14 C 1.36432 * 120.18642 * 180.25867 * 13 12 11 15 15 C 1.40829 * 119.81087 * 359.47803 * 14 13 12 16 16 C 1.41217 * 120.18136 * 180.29966 * 15 14 13 17 17 H 1.08007 * 119.99431 * 334.54556 * 16 15 14 18 18 C 1.39886 * 120.00296 * 154.55090 * 16 15 14 19 19 N 1.30876 * 120.00127 * 342.67142 * 18 16 15 20 20 Si 1.86799 * 120.00000 * 162.68084 * 18 16 15 21 21 H 1.48503 * 109.47396 * 94.72349 * 20 18 16 22 22 H 1.48503 * 109.46975 * 214.71989 * 20 18 16 23 23 H 1.48505 * 109.47246 * 334.72053 * 20 18 16 24 24 C 1.40838 * 119.64308 * 0.27142 * 15 14 13 25 25 C 1.36432 * 119.81016 * 0.02562 * 24 15 14 26 26 H 1.08002 * 119.99887 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.00136 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46914 * 240.00267 * 3 2 1 29 29 H 1.09006 * 109.47077 * 359.97438 * 3 2 1 30 30 H 1.08997 * 109.47533 * 119.99786 * 3 2 1 31 31 H 1.09003 * 109.47845 * 59.99776 * 7 6 4 32 32 H 1.09001 * 109.47054 * 299.99425 * 7 6 4 33 33 H 1.09001 * 109.47483 * 60.00197 * 10 8 7 34 34 H 1.09005 * 109.46515 * 180.02562 * 10 8 7 35 35 H 1.08996 * 109.47204 * 299.99726 * 10 8 7 36 36 H 1.08003 * 119.90671 * 0.03807 * 13 12 11 37 37 H 1.08005 * 120.09539 * 179.74668 * 14 13 12 38 38 H 0.97002 * 120.00229 * 180.02562 * 19 18 16 39 39 H 1.08001 * 120.09432 * 180.02562 * 24 15 14 40 40 H 1.07997 * 119.90745 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3308 0.0000 0.0000 3 6 2.0843 1.3050 0.0000 4 6 2.0656 -1.2727 0.0006 5 8 1.4579 -2.3252 0.0006 6 8 3.4136 -1.2727 0.0011 7 6 4.0727 -2.5664 0.0011 8 6 5.5896 -2.3660 0.0010 9 1 6.0839 -3.3333 0.0907 10 6 5.9867 -1.4789 1.1827 11 8 5.9872 -1.7391 -1.2200 12 6 7.2673 -1.9349 -1.6245 13 6 8.1492 -2.6454 -0.8131 14 6 9.4396 -2.8422 -1.2101 15 6 9.8761 -2.3343 -2.4490 16 6 11.2083 -2.5389 -2.8705 17 1 11.9875 -2.6978 -2.1396 18 6 11.5187 -2.5358 -4.2345 19 7 10.5687 -2.6846 -5.1222 20 14 13.2894 -2.3193 -4.7889 21 1 13.9060 -3.6524 -5.0079 22 1 13.3202 -1.5455 -6.0560 23 1 14.0496 -1.5880 -3.7436 24 6 8.9768 -1.6217 -3.2656 25 6 7.6914 -1.4285 -2.8511 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 2.7110 1.3627 -0.8900 29 1 1.3760 2.1336 -0.0005 30 1 2.7110 1.3628 0.8900 31 1 3.7802 -3.1234 -0.8891 32 1 3.7795 -3.1236 0.8909 33 1 5.6834 -1.9570 2.1141 34 1 7.0673 -1.3357 1.1823 35 1 5.4924 -0.5116 1.0930 36 1 7.8115 -3.0385 0.1345 37 1 10.1232 -3.3897 -0.5781 38 1 10.7839 -2.6828 -6.0680 39 1 9.3037 -1.2294 -4.2173 40 1 7.0005 -0.8819 -3.4759 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225265340.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:36 Heat of formation + Delta-G solvation = -107.087005 kcal Electronic energy + Delta-G solvation = -22232.083191 eV Core-core repulsion = 18783.876406 eV Total energy + Delta-G solvation = -3448.206785 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.58161 -40.65844 -38.54330 -37.54837 -35.65607 -35.24769 -33.43385 -31.41456 -30.88770 -28.34999 -28.00452 -26.76070 -25.09835 -23.68160 -22.62588 -21.52824 -20.56980 -19.26437 -18.93204 -18.18492 -17.49181 -17.42341 -17.02510 -16.32235 -15.99545 -15.74398 -15.15170 -14.86658 -14.57996 -14.47322 -14.14898 -14.12474 -13.86776 -13.77919 -13.58124 -13.29397 -12.98625 -12.95213 -12.77664 -12.65836 -12.49387 -12.27809 -12.09682 -11.84784 -11.67526 -11.58515 -11.47690 -11.14033 -10.87146 -10.43298 -9.54467 -8.89640 -8.58421 -6.21817 0.13501 0.96162 1.03922 1.40192 1.50170 1.55956 1.65190 1.88771 2.23413 2.50304 2.74771 3.53508 3.65959 3.71156 3.90447 3.98218 4.11068 4.22243 4.34602 4.35743 4.42527 4.56457 4.69208 4.75676 4.83519 4.87960 4.93538 5.08404 5.10339 5.23180 5.23417 5.27193 5.31494 5.35004 5.52256 5.60462 5.66272 5.89921 6.07066 6.27557 6.57504 6.63566 6.82024 6.96422 7.11096 8.38384 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.034710 B = 0.002853 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.497576 B = 9810.780306 C =10099.398637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.185 4.185 3 C -0.108 4.108 4 C 0.492 3.508 5 O -0.547 6.547 6 O -0.343 6.343 7 C 0.076 3.924 8 C 0.081 3.919 9 H 0.096 0.904 10 C -0.169 4.169 11 O -0.327 6.327 12 C 0.005 3.995 13 C -0.164 4.164 14 C -0.206 4.206 15 C 0.055 3.945 16 C -0.500 4.500 17 H 0.076 0.924 18 C 0.033 3.967 19 N -0.833 5.833 20 Si 0.981 3.019 21 H -0.264 1.264 22 H -0.268 1.268 23 H -0.259 1.259 24 C -0.151 4.151 25 C -0.135 4.135 26 H 0.163 0.837 27 H 0.109 0.891 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.132 0.868 37 H 0.106 0.894 38 H 0.287 0.713 39 H 0.108 0.892 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.665 5.696 10.074 18.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.186 4.186 3 C -0.164 4.164 4 C 0.340 3.660 5 O -0.440 6.440 6 O -0.259 6.259 7 C 0.002 3.998 8 C 0.025 3.975 9 H 0.114 0.886 10 C -0.226 4.226 11 O -0.244 6.244 12 C -0.039 4.039 13 C -0.182 4.182 14 C -0.226 4.226 15 C 0.053 3.947 16 C -0.529 4.529 17 H 0.094 0.906 18 C -0.181 4.181 19 N -0.460 5.460 20 Si 0.802 3.198 21 H -0.189 1.189 22 H -0.192 1.192 23 H -0.182 1.182 24 C -0.171 4.171 25 C -0.153 4.153 26 H 0.181 0.819 27 H 0.127 0.873 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.128 0.872 33 H 0.111 0.889 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.150 0.850 37 H 0.124 0.876 38 H 0.097 0.903 39 H 0.126 0.874 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -14.979 5.458 9.737 18.680 hybrid contribution 0.945 -0.572 -0.523 1.222 sum -14.034 4.886 9.214 17.485 Atomic orbital electron populations 1.25111 0.93133 1.05344 0.86739 1.21161 0.95448 0.91998 1.10004 1.20776 1.00534 0.92319 1.02779 1.22206 0.81094 0.91021 0.71663 1.90817 1.69883 1.35020 1.48286 1.86668 1.20634 1.35194 1.83377 1.23248 0.89953 0.82750 1.03804 1.22541 0.92150 0.98078 0.84727 0.88602 1.22231 1.02112 1.01009 0.97230 1.85953 1.26259 1.71485 1.40660 1.18640 0.83981 1.05577 0.95717 1.20718 0.94243 1.03133 1.00124 1.20822 0.95868 1.06436 0.99444 1.17946 0.94087 0.90577 0.92105 1.19707 0.94313 1.46009 0.92920 0.90584 1.26725 1.03732 0.91317 0.96310 1.69891 1.36658 1.36129 1.03352 0.85212 0.76929 0.79310 0.78351 1.18860 1.19230 1.18249 1.20866 0.93125 1.02032 1.01043 1.19993 0.96373 1.03962 0.95014 0.81921 0.87278 0.92093 0.88425 0.91116 0.91455 0.87230 0.88949 0.92448 0.91507 0.85013 0.87569 0.90295 0.87427 0.87657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 13.92 66.66 0.93 0.08 16 2 C -0.19 -3.48 6.00 -18.74 -0.11 -3.59 16 3 C -0.11 -1.65 9.75 71.23 0.69 -0.95 16 4 C 0.49 13.13 7.88 70.11 0.55 13.69 16 5 O -0.55 -17.02 16.01 19.72 0.32 -16.70 16 6 O -0.34 -9.68 8.89 -54.46 -0.48 -10.16 16 7 C 0.08 2.06 5.34 71.98 0.38 2.44 16 8 C 0.08 2.42 2.64 30.60 0.08 2.50 16 9 H 0.10 2.69 6.26 -2.39 -0.01 2.68 16 10 C -0.17 -4.32 8.97 71.98 0.65 -3.68 16 11 O -0.33 -12.99 9.76 -86.46 -0.84 -13.83 16 12 C 0.00 0.21 6.62 22.79 0.15 0.36 16 13 C -0.16 -7.06 8.15 22.11 0.18 -6.88 16 14 C -0.21 -10.03 9.74 22.48 0.22 -9.81 16 15 C 0.05 3.00 5.57 -21.28 -0.12 2.88 16 16 C -0.50 -27.14 9.04 23.40 0.21 -26.93 16 17 H 0.08 3.96 7.90 -2.91 -0.02 3.94 16 18 C 0.03 1.67 5.14 85.23 0.44 2.11 16 19 N -0.83 -44.40 10.98 21.82 0.24 -44.16 16 20 Si 0.98 38.64 29.59 68.60 2.03 40.67 16 21 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 22 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 23 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 24 C -0.15 -8.16 8.64 22.48 0.19 -7.97 16 25 C -0.13 -6.64 9.92 22.11 0.22 -6.42 16 26 H 0.16 0.78 7.87 -2.91 -0.02 0.76 16 27 H 0.11 1.59 7.49 -2.91 -0.02 1.57 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 29 H 0.10 0.88 7.81 -2.38 -0.02 0.86 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.06 1.62 6.92 -2.38 -0.02 1.60 16 35 H 0.07 1.77 7.55 -2.39 -0.02 1.75 16 36 H 0.13 4.65 5.42 -2.91 -0.02 4.63 16 37 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 38 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 39 H 0.11 6.05 6.20 -2.91 -0.02 6.03 16 40 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -66.53 342.41 6.96 -59.56 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 1.04 Total: 26.79 kcal Atomic # 6 Polarization: -46.85 SS G_CDS: 4.67 Total: -42.18 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: 0.24 Total: -44.16 kcal Atomic # 8 Polarization: -39.68 SS G_CDS: -1.01 Total: -40.69 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.67 kcal Total: -66.53 6.96 -59.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225265340.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.523 kcal (2) G-P(sol) polarization free energy of solvation -66.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds