Wall clock time and date at job start Tue Mar 31 2020 06:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45195 * 109.47493 * 2 1 4 4 C 1.34227 * 117.00248 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00019 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00177 * 180.02562 * 4 3 2 7 7 H 1.08999 * 109.47119 * 60.00251 * 6 4 3 8 8 O 1.42899 * 109.46914 * 179.97438 * 6 4 3 9 9 C 1.35677 * 116.99482 * 226.67629 * 8 6 4 10 10 C 1.39317 * 119.81259 * 173.60205 * 9 8 6 11 11 C 1.36445 * 120.18091 * 179.75740 * 10 9 8 12 12 C 1.40834 * 119.81228 * 0.51369 * 11 10 9 13 13 C 1.41211 * 120.17728 * 179.71936 * 12 11 10 14 14 H 1.08001 * 119.99849 * 156.98770 * 13 12 11 15 15 C 1.39899 * 120.00123 * 336.98111 * 13 12 11 16 16 N 1.30875 * 120.00031 * 331.56740 * 15 13 12 17 17 Si 1.86794 * 119.99798 * 151.56739 * 15 13 12 18 18 H 1.48500 * 109.47596 * 94.98964 * 17 15 13 19 19 H 1.48507 * 109.46945 * 214.98805 * 17 15 13 20 20 H 1.48499 * 109.47392 * 334.98741 * 17 15 13 21 21 C 1.40831 * 119.64021 * 359.73750 * 12 11 10 22 22 C 1.36433 * 119.81169 * 0.02562 * 21 12 11 23 23 C 1.52988 * 109.46906 * 299.99927 * 6 4 3 24 24 C 1.52999 * 117.49794 * 248.74537 * 23 6 4 25 25 C 1.53007 * 117.49782 * 180.08855 * 23 6 4 26 26 H 1.09002 * 109.46712 * 299.99845 * 1 2 3 27 27 H 1.08999 * 109.47188 * 59.99455 * 1 2 3 28 28 H 1.08996 * 109.47782 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47149 * 239.99852 * 2 1 3 30 30 H 1.08999 * 109.47188 * 120.00545 * 2 1 3 31 31 H 1.08000 * 119.91361 * 0.02562 * 10 9 8 32 32 H 1.08004 * 120.08928 * 180.24744 * 11 10 9 33 33 H 0.97003 * 120.00121 * 179.97438 * 16 15 13 34 34 H 1.07998 * 120.08934 * 179.97438 * 21 12 11 35 35 H 1.08008 * 119.90488 * 179.97438 * 22 21 12 36 36 H 1.09001 * 115.55520 * 34.42165 * 23 6 4 37 37 H 1.08993 * 117.50038 * 0.02562 * 24 23 6 38 38 H 1.08998 * 117.50156 * 145.02600 * 24 23 6 39 39 H 1.09004 * 117.49538 * 214.98211 * 25 23 6 40 40 H 1.08998 * 117.49462 * 359.97211 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.5854 3.4689 0.8905 8 8 5.3479 2.8624 -0.0001 9 6 6.0064 3.6580 0.8797 10 6 7.3868 3.5368 1.0243 11 6 8.0573 4.3365 1.9032 12 6 7.3486 5.2790 2.6732 13 6 8.0340 6.1065 3.5895 14 1 7.6001 7.0464 3.8974 15 6 9.2749 5.7088 4.0985 16 7 9.5594 4.4362 4.2090 17 14 10.5257 6.9943 4.6202 18 1 10.4038 7.2399 6.0797 19 1 11.8944 6.5065 4.3131 20 1 10.2736 8.2583 3.8828 21 6 5.9526 5.3915 2.5247 22 6 5.2980 4.5875 1.6378 23 6 3.4488 3.6849 -1.2485 24 6 4.4958 4.0089 -2.3160 25 6 3.9308 5.1252 -1.4340 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 7.9282 2.8108 0.4359 32 1 9.1279 4.2440 2.0112 33 1 10.4200 4.1604 4.5616 34 1 5.4019 6.1114 3.1118 35 1 4.2273 4.6722 1.5230 36 1 2.4416 3.4436 -1.5883 37 1 5.5208 3.6891 -2.1290 38 1 4.1774 3.9812 -3.3581 39 1 3.2407 5.8312 -1.8961 40 1 4.5838 5.5401 -0.6662 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225266122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:43 Heat of formation + Delta-G solvation = -75.214826 kcal Electronic energy + Delta-G solvation = -22830.202577 eV Core-core repulsion = 19383.377873 eV Total energy + Delta-G solvation = -3446.824704 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.62356 -39.15045 -37.13766 -36.45556 -35.56397 -33.39264 -31.94424 -30.06939 -29.29061 -28.47565 -24.88684 -23.53102 -22.26699 -21.67883 -21.65551 -20.79848 -19.79009 -17.84002 -17.26195 -17.24096 -16.58737 -16.39791 -15.59500 -15.17887 -14.62912 -14.22262 -14.01284 -13.73066 -13.27073 -13.08153 -12.91416 -12.69536 -12.35544 -12.15483 -12.06689 -11.81592 -11.60073 -11.43965 -11.26109 -11.14345 -10.97137 -10.79211 -10.66723 -10.57997 -10.22434 -10.13276 -9.85482 -9.70435 -9.28784 -8.99341 -7.70775 -7.17578 -6.84979 -4.27897 2.29323 2.42449 2.75158 2.88985 3.05939 3.08523 3.19976 3.86788 3.90645 4.17967 4.49048 4.58365 4.76913 4.81754 4.89170 5.04261 5.11758 5.18452 5.33677 5.48731 5.54324 5.59436 5.60446 5.77412 5.85927 5.97861 6.01566 6.16156 6.33997 6.43370 6.46547 6.64864 6.91136 7.04358 7.09463 7.34698 7.48570 7.71411 7.87595 7.94842 8.11792 8.34969 8.56971 8.82274 8.92205 10.08625 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025596 B = 0.003582 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.661782 B = 7815.764481 C = 8239.073899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.358 6.358 4 C 0.461 3.539 5 O -0.487 6.487 6 C 0.124 3.876 7 H 0.118 0.882 8 O -0.290 6.290 9 C -0.025 4.025 10 C -0.105 4.105 11 C -0.145 4.145 12 C 0.096 3.904 13 C -0.468 4.468 14 H 0.080 0.920 15 C 0.083 3.917 16 N -0.779 5.779 17 Si 0.898 3.102 18 H -0.271 1.271 19 H -0.275 1.275 20 H -0.259 1.259 21 C -0.200 4.200 22 C -0.162 4.162 23 C -0.176 4.176 24 C -0.162 4.162 25 C -0.169 4.169 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.283 0.717 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.118 0.882 37 H 0.109 0.891 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.476 -2.906 -7.927 15.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.276 6.276 4 C 0.303 3.697 5 O -0.372 6.372 6 C 0.065 3.935 7 H 0.135 0.865 8 O -0.205 6.205 9 C -0.068 4.068 10 C -0.123 4.123 11 C -0.165 4.165 12 C 0.094 3.906 13 C -0.496 4.496 14 H 0.098 0.902 15 C -0.137 4.137 16 N -0.403 5.403 17 Si 0.722 3.278 18 H -0.196 1.196 19 H -0.199 1.199 20 H -0.182 1.182 21 C -0.219 4.219 22 C -0.181 4.181 23 C -0.194 4.194 24 C -0.199 4.199 25 C -0.206 4.206 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.133 0.867 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.136 0.864 37 H 0.128 0.872 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.993 -3.543 -7.960 14.824 hybrid contribution 0.442 0.283 0.516 0.736 sum -11.551 -3.260 -7.444 14.124 Atomic orbital electron populations 1.21796 0.92638 1.02840 1.03526 1.23011 0.95233 0.80468 1.02656 1.86482 1.24395 1.32226 1.84492 1.23825 0.80522 0.92646 0.72745 1.90668 1.60278 1.42685 1.43615 1.20972 0.83515 0.88656 1.00370 0.86505 1.85995 1.14483 1.63142 1.56889 1.18540 0.91868 0.97561 0.98818 1.19769 0.90670 1.01048 1.00852 1.20749 0.99246 0.99403 0.97062 1.17556 0.90639 0.91243 0.91159 1.19438 1.02219 1.05244 1.22734 0.90222 1.25901 0.98897 0.95484 0.93375 1.69914 1.22510 1.16608 1.31275 0.86465 0.79701 0.82216 0.79394 1.19578 1.19945 1.18241 1.20497 0.94326 1.03857 1.03269 1.20380 0.97412 0.99539 1.00759 1.22547 0.99806 0.99350 0.97699 1.22932 0.99768 1.02385 0.94816 1.23080 1.03578 0.90244 1.03651 0.91411 0.91508 0.90336 0.91301 0.91224 0.88389 0.86670 0.90656 0.88569 0.88344 0.86376 0.87241 0.89122 0.88706 0.87434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.29 37.16 0.38 -0.77 16 2 C 0.06 0.67 6.19 37.16 0.23 0.90 16 3 O -0.36 -5.00 10.01 -39.25 -0.39 -5.39 16 4 C 0.46 7.88 7.33 36.01 0.26 8.15 16 5 O -0.49 -9.89 16.25 -25.48 -0.41 -10.30 16 6 C 0.12 2.10 2.81 -27.89 -0.08 2.02 16 7 H 0.12 1.93 5.06 -51.93 -0.26 1.67 16 8 O -0.29 -6.00 7.65 -38.69 -0.30 -6.29 16 9 C -0.03 -0.57 6.52 -38.78 -0.25 -0.82 16 10 C -0.10 -2.51 9.92 -39.83 -0.40 -2.90 16 11 C -0.15 -3.72 8.70 -39.25 -0.34 -4.06 16 12 C 0.10 2.51 5.56 -106.81 -0.59 1.92 16 13 C -0.47 -12.14 8.97 -37.83 -0.34 -12.47 16 14 H 0.08 1.99 7.98 -52.49 -0.42 1.57 16 15 C 0.08 2.06 4.88 -17.34 -0.08 1.97 16 16 N -0.78 -19.89 11.56 55.55 0.64 -19.25 16 17 Si 0.90 18.20 29.64 -169.99 -5.04 13.16 16 18 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 19 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 20 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 21 C -0.20 -4.74 9.74 -39.25 -0.38 -5.12 16 22 C -0.16 -3.51 7.68 -39.83 -0.31 -3.82 16 23 C -0.18 -2.45 5.67 -90.62 -0.51 -2.97 16 24 C -0.16 -2.26 9.88 -26.69 -0.26 -2.53 16 25 C -0.17 -2.29 10.19 -26.69 -0.27 -2.56 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 30 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 31 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 32 H 0.12 3.01 6.45 -52.48 -0.34 2.67 16 33 H 0.28 6.53 8.30 -40.82 -0.34 6.20 16 34 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 35 H 0.10 1.83 5.66 -52.48 -0.30 1.53 16 36 H 0.12 1.41 7.96 -51.93 -0.41 1.00 16 37 H 0.11 1.79 7.07 -51.93 -0.37 1.42 16 38 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.11 1.71 6.61 -51.93 -0.34 1.36 16 LS Contribution 338.93 15.07 5.11 5.11 Total: -1.00 -29.15 338.93 -8.72 -37.87 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -5.38 Total: 8.19 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: -2.95 Total: -23.08 kcal Atomic # 7 Polarization: -19.89 SS G_CDS: 0.64 Total: -19.25 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -1.10 Total: -21.99 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.04 Total: 13.16 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.15 -8.72 -37.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225266122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.345 kcal (2) G-P(sol) polarization free energy of solvation -29.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds