Wall clock time and date at job start Tue Mar 31 2020 06:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45195 * 109.47493 * 2 1 4 4 C 1.34227 * 117.00248 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00019 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00177 * 180.02562 * 4 3 2 7 7 H 1.08999 * 109.47119 * 60.00251 * 6 4 3 8 8 O 1.42899 * 109.46914 * 179.97438 * 6 4 3 9 9 C 1.35677 * 116.99482 * 226.67629 * 8 6 4 10 10 C 1.39317 * 119.81259 * 173.60205 * 9 8 6 11 11 C 1.36445 * 120.18091 * 179.75740 * 10 9 8 12 12 C 1.40834 * 119.81228 * 0.51369 * 11 10 9 13 13 C 1.41211 * 120.17728 * 179.71936 * 12 11 10 14 14 H 1.08001 * 119.99849 * 156.98770 * 13 12 11 15 15 C 1.39899 * 120.00123 * 336.98111 * 13 12 11 16 16 N 1.30875 * 120.00031 * 331.56740 * 15 13 12 17 17 Si 1.86794 * 119.99798 * 151.56739 * 15 13 12 18 18 H 1.48500 * 109.47596 * 94.98964 * 17 15 13 19 19 H 1.48507 * 109.46945 * 214.98805 * 17 15 13 20 20 H 1.48499 * 109.47392 * 334.98741 * 17 15 13 21 21 C 1.40831 * 119.64021 * 359.73750 * 12 11 10 22 22 C 1.36433 * 119.81169 * 0.02562 * 21 12 11 23 23 C 1.52988 * 109.46906 * 299.99927 * 6 4 3 24 24 C 1.52999 * 117.49794 * 248.74537 * 23 6 4 25 25 C 1.53007 * 117.49782 * 180.08855 * 23 6 4 26 26 H 1.09002 * 109.46712 * 299.99845 * 1 2 3 27 27 H 1.08999 * 109.47188 * 59.99455 * 1 2 3 28 28 H 1.08996 * 109.47782 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47149 * 239.99852 * 2 1 3 30 30 H 1.08999 * 109.47188 * 120.00545 * 2 1 3 31 31 H 1.08000 * 119.91361 * 0.02562 * 10 9 8 32 32 H 1.08004 * 120.08928 * 180.24744 * 11 10 9 33 33 H 0.97003 * 120.00121 * 179.97438 * 16 15 13 34 34 H 1.07998 * 120.08934 * 179.97438 * 21 12 11 35 35 H 1.08008 * 119.90488 * 179.97438 * 22 21 12 36 36 H 1.09001 * 115.55520 * 34.42165 * 23 6 4 37 37 H 1.08993 * 117.50038 * 0.02562 * 24 23 6 38 38 H 1.08998 * 117.50156 * 145.02600 * 24 23 6 39 39 H 1.09004 * 117.49538 * 214.98211 * 25 23 6 40 40 H 1.08998 * 117.49462 * 359.97211 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.5854 3.4689 0.8905 8 8 5.3479 2.8624 -0.0001 9 6 6.0064 3.6580 0.8797 10 6 7.3868 3.5368 1.0243 11 6 8.0573 4.3365 1.9032 12 6 7.3486 5.2790 2.6732 13 6 8.0340 6.1065 3.5895 14 1 7.6001 7.0464 3.8974 15 6 9.2749 5.7088 4.0985 16 7 9.5594 4.4362 4.2090 17 14 10.5257 6.9943 4.6202 18 1 10.4038 7.2399 6.0797 19 1 11.8944 6.5065 4.3131 20 1 10.2736 8.2583 3.8828 21 6 5.9526 5.3915 2.5247 22 6 5.2980 4.5875 1.6378 23 6 3.4488 3.6849 -1.2485 24 6 4.4958 4.0089 -2.3160 25 6 3.9308 5.1252 -1.4340 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 7.9282 2.8108 0.4359 32 1 9.1279 4.2440 2.0112 33 1 10.4200 4.1604 4.5616 34 1 5.4019 6.1114 3.1118 35 1 4.2273 4.6722 1.5230 36 1 2.4416 3.4436 -1.5883 37 1 5.5208 3.6891 -2.1290 38 1 4.1774 3.9812 -3.3581 39 1 3.2407 5.8312 -1.8961 40 1 4.5838 5.5401 -0.6662 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225266122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:43 Heat of formation + Delta-G solvation = -88.677492 kcal Electronic energy + Delta-G solvation = -22830.786362 eV Core-core repulsion = 19383.377873 eV Total energy + Delta-G solvation = -3447.408489 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.98522 -40.66594 -38.74462 -37.72498 -37.01729 -35.22886 -32.81838 -31.82466 -31.11597 -29.92544 -26.73241 -24.52200 -23.51418 -23.16746 -22.79862 -22.58529 -21.22672 -19.46967 -18.90243 -18.69655 -17.84017 -17.69627 -17.05690 -16.84209 -15.95199 -15.71100 -15.47760 -15.02916 -14.81872 -14.53639 -14.23363 -14.09831 -13.89017 -13.63857 -13.36946 -13.06727 -12.90181 -12.85057 -12.63698 -12.54763 -12.39437 -12.32696 -12.08861 -11.81515 -11.65173 -11.58407 -11.39313 -11.14791 -10.84130 -10.77695 -9.59313 -9.04373 -8.68955 -6.21458 0.89042 0.95638 0.99488 1.24208 1.39646 1.49123 1.57590 2.20913 2.58768 2.65355 2.87056 3.42419 3.61303 3.74243 3.76438 3.98100 4.05084 4.08883 4.13453 4.30010 4.31706 4.34266 4.38031 4.77243 4.82615 4.83777 4.92376 4.98026 5.02603 5.09251 5.15940 5.23383 5.24279 5.34437 5.35356 5.50764 5.59887 5.84219 6.02968 6.20145 6.47018 6.59780 6.74469 6.91058 7.04308 8.27438 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025596 B = 0.003582 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.661782 B = 7815.764481 C = 8239.073899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 O -0.348 6.348 4 C 0.467 3.533 5 O -0.528 6.528 6 C 0.114 3.886 7 H 0.124 0.876 8 O -0.304 6.304 9 C -0.014 4.014 10 C -0.121 4.121 11 C -0.164 4.164 12 C 0.066 3.934 13 C -0.503 4.503 14 H 0.081 0.919 15 C 0.044 3.956 16 N -0.815 5.815 17 Si 0.974 3.026 18 H -0.261 1.261 19 H -0.268 1.268 20 H -0.257 1.257 21 C -0.207 4.207 22 C -0.154 4.154 23 C -0.171 4.171 24 C -0.168 4.168 25 C -0.161 4.161 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.290 0.710 34 H 0.110 0.890 35 H 0.133 0.867 36 H 0.148 0.852 37 H 0.078 0.922 38 H 0.119 0.881 39 H 0.128 0.872 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.688 -2.229 -8.665 17.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.024 4.024 3 O -0.265 6.265 4 C 0.310 3.690 5 O -0.416 6.416 6 C 0.056 3.944 7 H 0.141 0.859 8 O -0.219 6.219 9 C -0.057 4.057 10 C -0.140 4.140 11 C -0.183 4.183 12 C 0.064 3.936 13 C -0.531 4.531 14 H 0.099 0.901 15 C -0.173 4.173 16 N -0.440 5.440 17 Si 0.794 3.206 18 H -0.186 1.186 19 H -0.192 1.192 20 H -0.181 1.181 21 C -0.227 4.227 22 C -0.172 4.172 23 C -0.190 4.190 24 C -0.205 4.205 25 C -0.197 4.197 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.120 0.880 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.101 0.899 34 H 0.128 0.872 35 H 0.151 0.849 36 H 0.165 0.835 37 H 0.097 0.903 38 H 0.138 0.862 39 H 0.146 0.854 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.250 -2.867 -8.705 16.942 hybrid contribution 0.950 -0.061 0.659 1.158 sum -13.299 -2.928 -8.046 15.817 Atomic orbital electron populations 1.21824 0.89518 1.04578 1.04041 1.23400 0.97573 0.78883 1.02549 1.86478 1.22279 1.34127 1.83608 1.23800 0.81341 0.92082 0.71742 1.90658 1.61420 1.43820 1.45742 1.21311 0.81394 0.89377 1.02346 0.85918 1.85973 1.16967 1.62764 1.56223 1.18560 0.91587 0.97298 0.98256 1.19906 0.91904 1.01201 1.00990 1.20654 0.98691 1.00644 0.98311 1.17892 0.91937 0.91905 0.91851 1.19693 1.03873 1.05645 1.23890 0.90107 1.26748 1.00258 0.97403 0.92931 1.69950 1.23396 1.18503 1.32169 0.85328 0.76923 0.79091 0.79224 1.18578 1.19229 1.18062 1.20750 0.93748 1.04402 1.03786 1.20633 0.99072 0.98181 0.99342 1.22595 1.00902 0.99255 0.96205 1.22956 0.98291 1.02778 0.96500 1.23103 1.03436 0.90412 1.02785 0.91186 0.90657 0.87983 0.91130 0.91820 0.87972 0.88263 0.89909 0.87205 0.84913 0.83478 0.90332 0.86249 0.85434 0.90014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 10.29 71.98 0.74 -1.02 16 2 C 0.05 1.00 6.19 71.98 0.45 1.45 16 3 O -0.35 -8.99 10.01 -51.39 -0.51 -9.50 16 4 C 0.47 15.45 7.33 71.24 0.52 15.97 16 5 O -0.53 -21.42 16.25 28.40 0.46 -20.96 16 6 C 0.11 3.70 2.81 29.84 0.08 3.79 16 7 H 0.12 3.81 5.06 -2.39 -0.01 3.79 16 8 O -0.30 -12.57 7.65 -70.86 -0.54 -13.11 16 9 C -0.01 -0.63 6.52 22.79 0.15 -0.48 16 10 C -0.12 -6.03 9.92 22.11 0.22 -5.81 16 11 C -0.16 -8.76 8.70 22.49 0.20 -8.56 16 12 C 0.07 3.56 5.56 -21.28 -0.12 3.45 16 13 C -0.50 -26.76 8.97 23.40 0.21 -26.55 16 14 H 0.08 4.12 7.98 -2.91 -0.02 4.09 16 15 C 0.04 2.19 4.88 85.24 0.42 2.61 16 16 N -0.82 -42.87 11.56 21.82 0.25 -42.62 16 17 Si 0.97 37.71 29.64 68.60 2.03 39.75 16 18 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 19 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 20 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 21 C -0.21 -9.89 9.74 22.48 0.22 -9.67 16 22 C -0.15 -6.58 7.68 22.11 0.17 -6.41 16 23 C -0.17 -4.33 5.67 -10.80 -0.06 -4.39 16 24 C -0.17 -4.38 9.88 30.62 0.30 -4.08 16 25 C -0.16 -3.93 10.19 30.62 0.31 -3.62 16 26 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 27 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 1.43 8.13 -2.39 -0.02 1.41 16 30 H 0.06 1.38 8.13 -2.39 -0.02 1.36 16 31 H 0.10 4.84 8.06 -2.91 -0.02 4.82 16 32 H 0.10 5.50 6.45 -2.91 -0.02 5.49 16 33 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 34 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 35 H 0.13 4.66 5.66 -2.91 -0.02 4.64 16 36 H 0.15 2.91 7.96 -2.39 -0.02 2.89 16 37 H 0.08 2.57 7.07 -2.39 -0.02 2.55 16 38 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.13 2.30 8.14 -2.38 -0.02 2.28 16 40 H 0.08 2.47 6.61 -2.39 -0.02 2.45 16 Total: -1.00 -65.24 338.93 6.54 -58.70 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: 1.05 Total: 31.10 kcal Atomic # 6 Polarization: -47.15 SS G_CDS: 3.80 Total: -43.34 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.25 Total: -42.62 kcal Atomic # 8 Polarization: -42.99 SS G_CDS: -0.60 Total: -43.58 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 2.03 Total: 39.75 kcal Total: -65.24 6.54 -58.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225266122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.976 kcal (2) G-P(sol) polarization free energy of solvation -65.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds