Wall clock time and date at job start Tue Mar 31 2020 06:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45198 * 109.46827 * 2 1 4 4 C 1.34231 * 117.00255 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99729 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00192 * 180.02562 * 4 3 2 7 7 H 1.09003 * 109.46956 * 304.99484 * 6 4 3 8 8 O 1.42897 * 109.47047 * 185.00038 * 6 4 3 9 9 C 1.35670 * 117.00521 * 143.77459 * 8 6 4 10 10 C 1.39318 * 119.81315 * 359.06994 * 9 8 6 11 11 C 1.36441 * 120.18171 * 180.27973 * 10 9 8 12 12 C 1.40836 * 119.81374 * 359.50144 * 11 10 9 13 13 C 1.41208 * 120.17883 * 180.23078 * 12 11 10 14 14 H 1.08010 * 119.99921 * 205.49495 * 13 12 11 15 15 C 1.39891 * 120.00279 * 25.50319 * 13 12 11 16 16 N 1.30876 * 119.99988 * 16.70978 * 15 13 12 17 17 Si 1.86804 * 119.99864 * 196.71446 * 15 13 12 18 18 H 1.48495 * 109.47004 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47330 * 119.99699 * 17 15 13 20 20 H 1.48501 * 109.46606 * 239.99401 * 17 15 13 21 21 C 1.40833 * 119.64053 * 0.49840 * 12 11 10 22 22 C 1.36442 * 119.81266 * 359.75596 * 21 12 11 23 23 C 1.52995 * 109.47413 * 64.99226 * 6 4 3 24 24 C 1.52995 * 117.50260 * 248.74480 * 23 6 4 25 25 C 1.52998 * 117.49880 * 180.08501 * 23 6 4 26 26 H 1.08995 * 109.47414 * 60.00734 * 1 2 3 27 27 H 1.09007 * 109.47148 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47604 * 299.99733 * 1 2 3 29 29 H 1.08996 * 109.47286 * 239.99908 * 2 1 3 30 30 H 1.08999 * 109.46935 * 119.99329 * 2 1 3 31 31 H 1.07999 * 119.91002 * 0.02562 * 10 9 8 32 32 H 1.07998 * 120.09209 * 179.72960 * 11 10 9 33 33 H 0.96996 * 120.00148 * 180.02562 * 16 15 13 34 34 H 1.07997 * 120.09595 * 179.72961 * 21 12 11 35 35 H 1.08001 * 119.91056 * 179.97438 * 22 21 12 36 36 H 1.08996 * 115.54845 * 34.42320 * 23 6 4 37 37 H 1.09004 * 117.49706 * 0.02562 * 24 23 6 38 38 H 1.08999 * 117.49980 * 145.01775 * 24 23 6 39 39 H 1.09002 * 117.50351 * 214.98294 * 25 23 6 40 40 H 1.09000 * 117.49771 * 359.97438 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9205 2.9376 0.0000 7 1 3.5143 3.4990 -0.8414 8 8 5.3428 2.8649 -0.1181 9 6 5.9501 3.8310 -0.8518 10 6 5.1840 4.8209 -1.4634 11 6 5.7865 5.7929 -2.2076 12 6 7.1878 5.7997 -2.3479 13 6 7.8198 6.8048 -3.1123 14 1 8.7818 6.6143 -3.5651 15 6 7.2002 8.0473 -3.2831 16 7 6.2199 8.4038 -2.4927 17 14 7.7719 9.1975 -4.6395 18 1 8.8872 8.5644 -5.3879 19 1 6.6441 9.4688 -5.5666 20 1 8.2391 10.4740 -4.0415 21 6 7.9549 4.7953 -1.7264 22 6 7.3364 3.8275 -0.9900 23 6 3.5526 3.6412 1.3078 24 6 2.5645 4.8066 1.2293 25 6 4.0465 5.0763 1.5011 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 4.1098 4.8166 -1.3515 32 1 5.1908 6.5571 -2.6846 33 1 5.7900 9.2651 -2.6113 34 1 9.0296 4.7909 -1.8328 35 1 7.9231 3.0563 -0.5130 36 1 3.5074 3.0015 2.1892 37 1 2.1762 5.0719 0.2459 38 1 1.8694 4.9339 2.0592 39 1 4.3259 5.3809 2.5097 40 1 4.6340 5.5190 0.6968 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225266127.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:46 Heat of formation + Delta-G solvation = -74.386708 kcal Electronic energy + Delta-G solvation = -22925.140559 eV Core-core repulsion = 19478.351765 eV Total energy + Delta-G solvation = -3446.788794 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.63501 -39.14896 -37.08495 -36.52080 -35.73818 -33.37674 -31.93272 -29.77898 -29.62041 -28.23582 -24.84958 -23.53124 -22.21134 -21.75280 -21.62179 -20.99883 -19.68056 -18.04266 -17.35685 -16.84784 -16.62210 -16.53430 -15.48261 -15.08010 -14.67584 -14.22952 -14.00149 -13.84797 -13.16471 -13.06678 -13.02369 -12.71306 -12.46243 -12.07182 -12.01788 -11.79864 -11.66745 -11.35622 -11.26987 -11.14562 -11.01030 -10.66862 -10.60729 -10.58008 -10.30031 -10.00730 -9.83225 -9.76856 -9.34579 -9.05574 -7.70437 -7.05975 -6.76617 -4.29949 2.26005 2.38650 2.70900 2.90971 3.07049 3.12077 3.16416 3.73338 3.92766 4.39095 4.55853 4.63245 4.75756 4.81147 4.89029 4.99536 5.10132 5.12653 5.27290 5.50956 5.56521 5.59200 5.62020 5.77351 5.79984 6.01300 6.08392 6.22094 6.23996 6.39865 6.51179 6.61512 6.84313 7.02088 7.22980 7.32764 7.50019 7.79567 7.85687 7.95870 8.09691 8.35795 8.58436 8.85931 8.92800 10.18093 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023747 B = 0.003721 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.790924 B = 7523.643263 C = 7759.726680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.353 6.353 4 C 0.467 3.533 5 O -0.489 6.489 6 C 0.128 3.872 7 H 0.111 0.889 8 O -0.293 6.293 9 C -0.012 4.012 10 C -0.178 4.178 11 C -0.130 4.130 12 C 0.089 3.911 13 C -0.461 4.461 14 H 0.078 0.922 15 C 0.075 3.925 16 N -0.799 5.799 17 Si 0.907 3.093 18 H -0.261 1.261 19 H -0.273 1.273 20 H -0.275 1.275 21 C -0.195 4.195 22 C -0.105 4.105 23 C -0.173 4.173 24 C -0.167 4.167 25 C -0.162 4.162 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.123 0.877 33 H 0.279 0.721 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.942 -7.262 4.780 13.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.270 6.270 4 C 0.309 3.691 5 O -0.374 6.374 6 C 0.069 3.931 7 H 0.128 0.872 8 O -0.209 6.209 9 C -0.055 4.055 10 C -0.196 4.196 11 C -0.149 4.149 12 C 0.087 3.913 13 C -0.491 4.491 14 H 0.096 0.904 15 C -0.142 4.142 16 N -0.425 5.425 17 Si 0.731 3.269 18 H -0.185 1.185 19 H -0.198 1.198 20 H -0.201 1.201 21 C -0.214 4.214 22 C -0.124 4.124 23 C -0.191 4.191 24 C -0.204 4.204 25 C -0.199 4.199 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.140 0.860 33 H 0.090 0.910 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.125 0.875 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.785 -7.543 4.919 14.050 hybrid contribution 0.063 0.503 -0.550 0.748 sum -10.722 -7.040 4.369 13.551 Atomic orbital electron populations 1.21796 0.92572 1.02826 1.03619 1.23024 0.95313 0.80390 1.02622 1.86500 1.24057 1.32173 1.84312 1.23525 0.80637 0.92221 0.72739 1.90663 1.60329 1.42707 1.43736 1.20922 0.83991 0.89135 0.99061 0.87159 1.85960 1.15891 1.49497 1.69504 1.18575 0.92081 0.92438 1.02365 1.20555 0.97293 0.97950 1.03849 1.20929 0.95061 0.98038 1.00877 1.17609 0.91580 0.91635 0.90460 1.19516 1.05111 0.96446 1.28020 0.90421 1.25871 0.94058 0.98769 0.95500 1.69823 1.19874 1.20869 1.31940 0.86282 0.79717 0.79636 0.81215 1.18459 1.19788 1.20059 1.20615 0.97999 0.99188 1.03619 1.19603 0.90579 0.99955 1.02284 1.22373 1.06959 0.92081 0.97727 1.23002 0.93129 1.00914 1.03364 1.23184 0.96591 0.95893 1.04247 0.91386 0.90332 0.91434 0.91226 0.91288 0.88531 0.85974 0.91003 0.88068 0.88324 0.87512 0.88434 0.88522 0.88653 0.86449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.29 37.16 0.38 -0.77 16 2 C 0.06 0.66 6.19 37.16 0.23 0.89 16 3 O -0.35 -4.94 10.21 -39.26 -0.40 -5.34 16 4 C 0.47 7.95 7.27 36.00 0.26 8.21 16 5 O -0.49 -9.68 16.26 -25.46 -0.41 -10.09 16 6 C 0.13 2.23 2.59 -27.89 -0.07 2.16 16 7 H 0.11 1.87 5.04 -51.93 -0.26 1.61 16 8 O -0.29 -6.24 9.24 -38.62 -0.36 -6.59 16 9 C -0.01 -0.27 6.13 -38.78 -0.24 -0.51 16 10 C -0.18 -3.97 6.85 -39.83 -0.27 -4.24 16 11 C -0.13 -3.22 8.63 -39.25 -0.34 -3.56 16 12 C 0.09 2.32 5.57 -106.81 -0.59 1.72 16 13 C -0.46 -11.94 9.04 -37.84 -0.34 -12.28 16 14 H 0.08 1.95 7.90 -52.48 -0.41 1.53 16 15 C 0.07 1.83 5.15 -17.34 -0.09 1.74 16 16 N -0.80 -19.97 10.95 55.54 0.61 -19.37 16 17 Si 0.91 18.32 29.59 -169.99 -5.03 13.29 16 18 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 19 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 20 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 21 C -0.19 -4.71 9.74 -39.25 -0.38 -5.09 16 22 C -0.11 -2.44 9.92 -39.83 -0.40 -2.84 16 23 C -0.17 -2.60 5.37 -90.63 -0.49 -3.09 16 24 C -0.17 -2.16 10.18 -26.70 -0.27 -2.43 16 25 C -0.16 -2.51 9.82 -26.70 -0.26 -2.77 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.44 8.14 -51.92 -0.42 0.01 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 30 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 31 H 0.10 1.90 5.53 -52.49 -0.29 1.61 16 32 H 0.12 3.12 6.19 -52.49 -0.32 2.79 16 33 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 34 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 35 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 36 H 0.11 1.51 8.11 -51.93 -0.42 1.09 16 37 H 0.10 1.23 8.05 -51.93 -0.42 0.82 16 38 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.12 2.18 5.39 -51.93 -0.28 1.90 16 LS Contribution 337.91 15.07 5.09 5.09 Total: -1.00 -28.84 337.91 -8.72 -37.56 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -5.35 Total: 8.30 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: -2.87 Total: -22.86 kcal Atomic # 7 Polarization: -19.97 SS G_CDS: 0.61 Total: -19.37 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -1.17 Total: -22.02 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.84 -8.72 -37.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225266127.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.824 kcal (2) G-P(sol) polarization free energy of solvation -28.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds