Wall clock time and date at job start Tue Mar 31 2020 06:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45198 * 109.46827 * 2 1 4 4 C 1.34231 * 117.00255 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99729 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00192 * 180.02562 * 4 3 2 7 7 H 1.09003 * 109.46956 * 304.99484 * 6 4 3 8 8 O 1.42897 * 109.47047 * 185.00038 * 6 4 3 9 9 C 1.35670 * 117.00521 * 143.77459 * 8 6 4 10 10 C 1.39318 * 119.81315 * 359.06994 * 9 8 6 11 11 C 1.36441 * 120.18171 * 180.27973 * 10 9 8 12 12 C 1.40836 * 119.81374 * 359.50144 * 11 10 9 13 13 C 1.41208 * 120.17883 * 180.23078 * 12 11 10 14 14 H 1.08010 * 119.99921 * 205.49495 * 13 12 11 15 15 C 1.39891 * 120.00279 * 25.50319 * 13 12 11 16 16 N 1.30876 * 119.99988 * 16.70978 * 15 13 12 17 17 Si 1.86804 * 119.99864 * 196.71446 * 15 13 12 18 18 H 1.48495 * 109.47004 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47330 * 119.99699 * 17 15 13 20 20 H 1.48501 * 109.46606 * 239.99401 * 17 15 13 21 21 C 1.40833 * 119.64053 * 0.49840 * 12 11 10 22 22 C 1.36442 * 119.81266 * 359.75596 * 21 12 11 23 23 C 1.52995 * 109.47413 * 64.99226 * 6 4 3 24 24 C 1.52995 * 117.50260 * 248.74480 * 23 6 4 25 25 C 1.52998 * 117.49880 * 180.08501 * 23 6 4 26 26 H 1.08995 * 109.47414 * 60.00734 * 1 2 3 27 27 H 1.09007 * 109.47148 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47604 * 299.99733 * 1 2 3 29 29 H 1.08996 * 109.47286 * 239.99908 * 2 1 3 30 30 H 1.08999 * 109.46935 * 119.99329 * 2 1 3 31 31 H 1.07999 * 119.91002 * 0.02562 * 10 9 8 32 32 H 1.07998 * 120.09209 * 179.72960 * 11 10 9 33 33 H 0.96996 * 120.00148 * 180.02562 * 16 15 13 34 34 H 1.07997 * 120.09595 * 179.72961 * 21 12 11 35 35 H 1.08001 * 119.91056 * 179.97438 * 22 21 12 36 36 H 1.08996 * 115.54845 * 34.42320 * 23 6 4 37 37 H 1.09004 * 117.49706 * 0.02562 * 24 23 6 38 38 H 1.08999 * 117.49980 * 145.01775 * 24 23 6 39 39 H 1.09002 * 117.50351 * 214.98294 * 25 23 6 40 40 H 1.09000 * 117.49771 * 359.97438 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9205 2.9376 0.0000 7 1 3.5143 3.4990 -0.8414 8 8 5.3428 2.8649 -0.1181 9 6 5.9501 3.8310 -0.8518 10 6 5.1840 4.8209 -1.4634 11 6 5.7865 5.7929 -2.2076 12 6 7.1878 5.7997 -2.3479 13 6 7.8198 6.8048 -3.1123 14 1 8.7818 6.6143 -3.5651 15 6 7.2002 8.0473 -3.2831 16 7 6.2199 8.4038 -2.4927 17 14 7.7719 9.1975 -4.6395 18 1 8.8872 8.5644 -5.3879 19 1 6.6441 9.4688 -5.5666 20 1 8.2391 10.4740 -4.0415 21 6 7.9549 4.7953 -1.7264 22 6 7.3364 3.8275 -0.9900 23 6 3.5526 3.6412 1.3078 24 6 2.5645 4.8066 1.2293 25 6 4.0465 5.0763 1.5011 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 4.1098 4.8166 -1.3515 32 1 5.1908 6.5571 -2.6846 33 1 5.7900 9.2651 -2.6113 34 1 9.0296 4.7909 -1.8328 35 1 7.9231 3.0563 -0.5130 36 1 3.5074 3.0015 2.1892 37 1 2.1762 5.0719 0.2459 38 1 1.8694 4.9339 2.0592 39 1 4.3259 5.3809 2.5097 40 1 4.6340 5.5190 0.6968 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225266127.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:45 Heat of formation + Delta-G solvation = -87.485737 kcal Electronic energy + Delta-G solvation = -22925.708576 eV Core-core repulsion = 19478.351765 eV Total energy + Delta-G solvation = -3447.356810 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.99166 -40.68341 -38.67961 -37.77830 -37.22539 -35.21202 -32.78524 -31.60684 -31.33471 -29.74721 -26.68475 -24.50536 -23.50029 -23.19387 -22.85481 -22.70682 -21.16009 -19.54042 -19.16430 -18.38709 -17.91757 -17.72776 -17.07334 -16.58736 -15.98465 -15.77040 -15.52924 -15.00519 -14.80735 -14.56568 -14.24560 -14.20411 -13.71633 -13.62379 -13.40148 -13.16166 -12.97832 -12.76252 -12.65364 -12.53023 -12.39822 -12.33378 -11.95089 -11.74419 -11.64205 -11.58494 -11.41139 -11.15331 -10.99992 -10.86169 -9.56598 -8.92407 -8.59350 -6.22989 0.88889 0.92846 1.03356 1.16765 1.41805 1.50911 1.55986 2.24152 2.42262 2.72359 3.11391 3.39324 3.58656 3.64673 3.73772 3.98255 3.99110 4.05703 4.09559 4.24875 4.32271 4.35693 4.41181 4.76778 4.79684 4.84150 4.92616 4.94450 4.99060 5.08255 5.13226 5.15717 5.27028 5.34707 5.36651 5.47752 5.63657 5.93070 6.05417 6.20500 6.48184 6.59166 6.73776 6.95558 7.05056 8.37445 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023747 B = 0.003721 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.790924 B = 7523.643263 C = 7759.726680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.049 3.951 3 O -0.345 6.345 4 C 0.475 3.525 5 O -0.523 6.523 6 C 0.119 3.881 7 H 0.114 0.886 8 O -0.309 6.309 9 C -0.003 4.003 10 C -0.168 4.168 11 C -0.147 4.147 12 C 0.060 3.940 13 C -0.497 4.497 14 H 0.074 0.926 15 C 0.037 3.963 16 N -0.826 5.826 17 Si 0.980 3.020 18 H -0.261 1.261 19 H -0.264 1.264 20 H -0.267 1.267 21 C -0.204 4.204 22 C -0.117 4.117 23 C -0.179 4.179 24 C -0.138 4.138 25 C -0.180 4.180 26 H 0.069 0.931 27 H 0.103 0.897 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.288 0.712 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.101 0.899 38 H 0.128 0.872 39 H 0.109 0.891 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.909 -7.286 5.172 15.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.024 4.024 3 O -0.262 6.262 4 C 0.318 3.682 5 O -0.412 6.412 6 C 0.061 3.939 7 H 0.132 0.868 8 O -0.225 6.225 9 C -0.046 4.046 10 C -0.187 4.187 11 C -0.166 4.166 12 C 0.058 3.942 13 C -0.527 4.527 14 H 0.092 0.908 15 C -0.178 4.178 16 N -0.452 5.452 17 Si 0.801 3.199 18 H -0.185 1.185 19 H -0.189 1.189 20 H -0.192 1.192 21 C -0.224 4.224 22 C -0.136 4.136 23 C -0.197 4.197 24 C -0.174 4.174 25 C -0.217 4.217 26 H 0.088 0.912 27 H 0.122 0.878 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.139 0.861 32 H 0.129 0.871 33 H 0.098 0.902 34 H 0.127 0.873 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.120 0.880 38 H 0.146 0.854 39 H 0.127 0.873 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.785 -7.577 5.325 15.787 hybrid contribution 0.558 0.377 -0.572 0.884 sum -12.227 -7.200 4.753 14.964 Atomic orbital electron populations 1.21828 0.89629 1.04592 1.03981 1.23431 0.97523 0.78697 1.02732 1.86495 1.21993 1.34271 1.83457 1.23366 0.81466 0.91448 0.71923 1.90651 1.61345 1.43581 1.45614 1.21204 0.81941 0.90125 1.00590 0.86847 1.85924 1.18421 1.49036 1.69069 1.18642 0.92150 0.92344 1.01496 1.20684 0.98554 0.96887 1.02546 1.20896 0.94826 0.98765 1.02144 1.17943 0.92402 0.92503 0.91376 1.19734 1.05718 0.97651 1.29547 0.90776 1.26659 0.94007 0.99813 0.97308 1.69862 1.20654 1.21740 1.32981 0.85192 0.79278 0.77390 0.78050 1.18490 1.18894 1.19231 1.20769 0.98519 0.99284 1.03825 1.19838 0.91340 1.00154 1.02267 1.22358 1.08494 0.92083 0.96774 1.23156 0.91987 0.97527 1.04774 1.23106 0.98587 0.96152 1.03862 0.91233 0.87848 0.90823 0.91489 0.90986 0.86110 0.87102 0.90163 0.87282 0.86838 0.86403 0.88031 0.85363 0.87301 0.89859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 10.29 71.98 0.74 -1.02 16 2 C 0.05 0.98 6.19 71.98 0.45 1.43 16 3 O -0.35 -9.03 10.21 -51.42 -0.53 -9.56 16 4 C 0.48 15.68 7.27 71.24 0.52 16.20 16 5 O -0.52 -20.55 16.26 28.38 0.46 -20.09 16 6 C 0.12 4.05 2.59 29.85 0.08 4.13 16 7 H 0.11 3.73 5.04 -2.39 -0.01 3.71 16 8 O -0.31 -13.10 9.24 -70.84 -0.65 -13.75 16 9 C 0.00 -0.14 6.13 22.79 0.14 0.00 16 10 C -0.17 -7.58 6.85 22.11 0.15 -7.43 16 11 C -0.15 -7.49 8.63 22.49 0.19 -7.30 16 12 C 0.06 3.21 5.57 -21.28 -0.12 3.09 16 13 C -0.50 -26.48 9.04 23.40 0.21 -26.27 16 14 H 0.07 3.84 7.90 -2.91 -0.02 3.82 16 15 C 0.04 1.80 5.15 85.24 0.44 2.24 16 16 N -0.83 -41.87 10.95 21.82 0.24 -41.63 16 17 Si 0.98 37.66 29.59 68.60 2.03 39.69 16 18 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 19 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 20 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 21 C -0.20 -10.17 9.74 22.49 0.22 -9.95 16 22 C -0.12 -5.51 9.92 22.11 0.22 -5.29 16 23 C -0.18 -5.06 5.37 -10.80 -0.06 -5.11 16 24 C -0.14 -3.16 10.18 30.62 0.31 -2.85 16 25 C -0.18 -5.35 9.82 30.62 0.30 -5.05 16 26 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.07 1.38 8.13 -2.39 -0.02 1.36 16 30 H 0.07 1.40 8.13 -2.39 -0.02 1.38 16 31 H 0.12 4.71 5.53 -2.91 -0.02 4.70 16 32 H 0.11 5.84 6.19 -2.91 -0.02 5.82 16 33 H 0.29 13.13 8.30 -92.71 -0.77 12.36 16 34 H 0.11 5.08 8.06 -2.91 -0.02 5.05 16 35 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 36 H 0.12 3.08 8.11 -2.39 -0.02 3.06 16 37 H 0.10 2.27 8.05 -2.39 -0.02 2.26 16 38 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 40 H 0.08 3.10 5.39 -2.39 -0.01 3.09 16 Total: -1.00 -63.41 337.91 6.39 -57.02 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: 1.05 Total: 31.50 kcal Atomic # 6 Polarization: -46.98 SS G_CDS: 3.79 Total: -43.19 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 0.24 Total: -41.63 kcal Atomic # 8 Polarization: -42.68 SS G_CDS: -0.72 Total: -43.40 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 2.03 Total: 39.69 kcal Total: -63.41 6.39 -57.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225266127.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.465 kcal (2) G-P(sol) polarization free energy of solvation -63.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds