Wall clock time and date at job start Tue Mar 31 2020 06:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34232 * 117.00209 * 2 1 4 4 O 1.20822 * 119.99826 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00301 * 180.02562 * 3 2 1 6 6 H 1.08997 * 110.81280 * 56.65682 * 5 3 2 7 7 C 1.54890 * 110.75254 * 293.32528 * 5 3 2 8 8 C 1.54264 * 104.19626 * 203.74030 * 7 5 3 9 9 C 1.53884 * 106.59391 * 23.61119 * 8 7 5 10 10 H 1.08997 * 110.02934 * 240.71538 * 9 8 7 11 11 O 1.42904 * 110.02926 * 119.28509 * 9 8 7 12 12 C 1.35677 * 117.00030 * 84.34161 * 11 9 8 13 13 C 1.39308 * 119.81643 * 175.17292 * 12 11 9 14 14 C 1.36446 * 120.18434 * 179.75773 * 13 12 11 15 15 C 1.40836 * 119.80807 * 0.51239 * 14 13 12 16 16 C 1.41210 * 120.17673 * 179.71558 * 15 14 13 17 17 H 1.08003 * 119.99933 * 160.31541 * 16 15 14 18 18 C 1.39898 * 120.00122 * 340.32105 * 16 15 14 19 19 N 1.30874 * 119.99951 * 327.15524 * 18 16 15 20 20 Si 1.86798 * 119.99711 * 147.15809 * 18 16 15 21 21 H 1.48496 * 109.47228 * 94.99088 * 20 18 16 22 22 H 1.48504 * 109.46933 * 214.98594 * 20 18 16 23 23 H 1.48496 * 109.47359 * 334.98720 * 20 18 16 24 24 C 1.40831 * 119.64176 * 359.74696 * 15 14 13 25 25 C 1.36438 * 119.81271 * 359.97438 * 24 15 14 26 26 C 1.54259 * 106.60058 * 359.97438 * 9 8 7 27 27 H 1.09003 * 109.46769 * 60.00014 * 1 2 3 28 28 H 1.08996 * 109.47503 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47432 * 300.00621 * 1 2 3 30 30 H 1.09000 * 110.48728 * 322.42121 * 7 5 3 31 31 H 1.09002 * 110.48450 * 85.06538 * 7 5 3 32 32 H 1.08994 * 110.03695 * 264.32853 * 8 7 5 33 33 H 1.09000 * 110.07412 * 142.91408 * 8 7 5 34 34 H 1.07995 * 119.90829 * 0.02562 * 13 12 11 35 35 H 1.07997 * 120.09346 * 180.25298 * 14 13 12 36 36 H 0.96998 * 120.00238 * 180.02562 * 19 18 16 37 37 H 1.08003 * 120.09277 * 180.02562 * 24 15 14 38 38 H 1.08000 * 119.90564 * 179.97438 * 25 24 15 39 39 H 1.08999 * 110.48565 * 217.71092 * 26 9 8 40 40 H 1.09002 * 110.48741 * 95.07094 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9821 0.7361 -0.8520 7 6 4.1450 0.7306 1.3291 8 6 5.5256 1.4087 1.4465 9 6 5.4580 2.6927 0.6011 10 1 6.2002 2.6542 -0.1963 11 8 5.6857 3.8357 1.4279 12 6 6.9773 4.1778 1.6639 13 6 7.2671 5.3386 2.3774 14 6 8.5632 5.6872 2.6233 15 6 9.6095 4.8753 2.1441 16 6 10.9537 5.2318 2.3889 17 1 11.7320 4.4866 2.3155 18 6 11.2774 6.5503 2.7266 19 7 10.5819 7.5422 2.2314 20 14 12.7022 6.8949 3.8845 21 1 13.9276 7.1714 3.0927 22 1 12.3808 8.0746 4.7273 23 1 12.9307 5.7129 4.7538 24 6 9.3078 3.7063 1.4190 25 6 8.0063 3.3691 1.1867 26 6 4.0389 2.7496 -0.0011 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.5081 1.0145 2.1669 31 1 4.2549 -0.3528 1.2822 32 1 6.3007 0.7472 1.0595 33 1 5.7330 1.6575 2.4873 34 1 6.4637 5.9621 2.7407 35 1 8.7861 6.5853 3.1801 36 1 10.8065 8.4564 2.4652 37 1 10.1045 3.0782 1.0485 38 1 7.7733 2.4732 0.6304 39 1 4.0715 3.1399 -1.0183 40 1 3.3844 3.3595 0.6217 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225267466.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:36 Heat of formation + Delta-G solvation = -115.897114 kcal Electronic energy + Delta-G solvation = -22306.970735 eV Core-core repulsion = 18858.381915 eV Total energy + Delta-G solvation = -3448.588820 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.83104 -39.25673 -37.43264 -36.57215 -35.54187 -33.34330 -30.07098 -29.32307 -29.21116 -28.45945 -27.31682 -24.77859 -22.94918 -21.47641 -20.82399 -20.17426 -19.67213 -17.98017 -17.37213 -17.14527 -16.71128 -16.52277 -15.61957 -15.18711 -14.79272 -14.05718 -13.86254 -13.71540 -13.49231 -13.22106 -13.08111 -12.57952 -12.40218 -12.25486 -12.09523 -11.82505 -11.71050 -11.32740 -11.14675 -11.11766 -11.04905 -10.99408 -10.89153 -10.62042 -10.49753 -10.29895 -10.00716 -9.76846 -9.31589 -8.88699 -7.62725 -7.14665 -6.83078 -4.20133 2.01521 2.47137 2.77908 2.96845 3.07269 3.10108 3.25101 3.92240 4.08386 4.28371 4.43210 4.52654 4.76819 4.83328 4.90487 4.94137 5.23416 5.27146 5.34806 5.38694 5.44152 5.61764 5.68074 5.79359 5.96544 6.08983 6.11490 6.14588 6.18084 6.28957 6.32743 6.77305 6.98756 7.11533 7.15689 7.47314 7.55520 7.56029 7.83172 8.00757 8.18924 8.46695 8.66918 8.87224 9.01307 10.08045 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.054546 B = 0.002713 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.202044 B =10319.184239 C =10566.618618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.470 3.530 4 O -0.503 6.503 5 C -0.088 4.088 6 H 0.116 0.884 7 C -0.105 4.105 8 C -0.147 4.147 9 C 0.090 3.910 10 H 0.072 0.928 11 O -0.319 6.319 12 C -0.020 4.020 13 C -0.111 4.111 14 C -0.153 4.153 15 C 0.094 3.906 16 C -0.471 4.471 17 H 0.079 0.921 18 C 0.087 3.913 19 N -0.774 5.774 20 Si 0.894 3.106 21 H -0.270 1.270 22 H -0.274 1.274 23 H -0.258 1.258 24 C -0.207 4.207 25 C -0.157 4.157 26 C -0.103 4.103 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.282 0.718 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.852 -12.281 -3.260 18.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.313 3.687 4 O -0.390 6.390 5 C -0.107 4.107 6 H 0.134 0.866 7 C -0.143 4.143 8 C -0.185 4.185 9 C 0.032 3.968 10 H 0.090 0.910 11 O -0.235 6.235 12 C -0.063 4.063 13 C -0.130 4.130 14 C -0.172 4.172 15 C 0.091 3.909 16 C -0.499 4.499 17 H 0.097 0.903 18 C -0.133 4.133 19 N -0.397 5.397 20 Si 0.718 3.282 21 H -0.196 1.196 22 H -0.199 1.199 23 H -0.182 1.182 24 C -0.226 4.226 25 C -0.176 4.176 26 C -0.141 4.141 27 H 0.081 0.919 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.131 0.869 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.269 -11.621 -3.215 17.929 hybrid contribution 0.570 0.174 0.292 0.663 sum -12.699 -11.447 -2.923 17.345 Atomic orbital electron populations 1.23263 0.76521 1.03603 1.02584 1.86518 1.23293 1.33604 1.84169 1.23682 0.91866 0.81219 0.71971 1.90679 1.67082 1.36358 1.44856 1.22009 0.86711 0.99871 1.02104 0.86572 1.22285 0.96834 1.00482 0.94704 1.22761 0.96243 0.96843 1.02643 1.22653 0.96013 0.85541 0.92594 0.90974 1.85912 1.25251 1.45588 1.66751 1.18486 0.81284 0.98265 1.08270 1.19770 0.96524 0.94965 1.01737 1.20720 0.90694 1.01642 1.04160 1.17525 0.93357 0.90830 0.89164 1.19401 0.93548 0.94384 1.42601 0.90269 1.25903 0.97338 0.95903 0.94199 1.69955 1.37305 1.00592 1.31857 0.86541 0.81336 0.79067 0.81284 1.19576 1.19936 1.18205 1.20478 0.94186 1.01479 1.06493 1.20424 0.93661 0.99364 1.04131 1.22308 0.95929 0.93451 1.02376 0.91936 0.88134 0.91889 0.90966 0.90250 0.90826 0.89754 0.88644 0.86903 0.90684 0.88861 0.88682 0.90187 0.88804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.71 10.57 -39.26 -0.41 -4.12 16 3 C 0.47 5.66 7.26 36.01 0.26 5.92 16 4 O -0.50 -7.50 15.47 -18.75 -0.29 -7.79 16 5 C -0.09 -0.95 3.40 -89.79 -0.31 -1.26 16 6 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 7 C -0.11 -1.12 6.26 -25.07 -0.16 -1.28 16 8 C -0.15 -1.94 5.78 -25.61 -0.15 -2.08 16 9 C 0.09 1.39 2.82 -25.61 -0.07 1.32 16 10 H 0.07 1.12 6.41 -51.93 -0.33 0.78 16 11 O -0.32 -6.47 9.70 -18.73 -0.18 -6.65 16 12 C -0.02 -0.46 6.63 -38.78 -0.26 -0.72 16 13 C -0.11 -2.70 9.92 -39.83 -0.40 -3.09 16 14 C -0.15 -3.99 8.75 -39.25 -0.34 -4.33 16 15 C 0.09 2.49 5.60 -106.81 -0.60 1.89 16 16 C -0.47 -12.44 8.95 -37.83 -0.34 -12.78 16 17 H 0.08 2.02 8.02 -52.48 -0.42 1.59 16 18 C 0.09 2.18 4.79 -17.34 -0.08 2.10 16 19 N -0.77 -19.85 11.65 55.55 0.65 -19.20 16 20 Si 0.89 18.32 29.66 -169.99 -5.04 13.28 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 23 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 24 C -0.21 -5.04 9.74 -39.25 -0.38 -5.43 16 25 C -0.16 -3.49 8.66 -39.83 -0.35 -3.83 16 26 C -0.10 -1.38 5.64 -25.09 -0.14 -1.53 16 27 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 30 H 0.07 0.81 8.04 -51.93 -0.42 0.39 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.87 8.00 -51.93 -0.42 0.45 16 33 H 0.08 1.27 7.95 -51.93 -0.41 0.85 16 34 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 35 H 0.11 2.99 6.38 -52.49 -0.33 2.66 16 36 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 37 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 38 H 0.10 1.81 5.59 -52.49 -0.29 1.51 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.09 1.44 7.37 -51.93 -0.38 1.06 16 LS Contribution 334.14 15.07 5.04 5.04 Total: -1.00 -29.79 334.14 -8.01 -37.80 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -5.53 Total: 5.44 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: -2.24 Total: -23.78 kcal Atomic # 7 Polarization: -19.85 SS G_CDS: 0.65 Total: -19.20 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.89 Total: -18.57 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.04 Total: 13.28 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.79 -8.01 -37.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225267466.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.100 kcal (2) G-P(sol) polarization free energy of solvation -29.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds