Wall clock time and date at job start Tue Mar 31 2020 06:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34232 * 117.00209 * 2 1 4 4 O 1.20822 * 119.99826 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00301 * 180.02562 * 3 2 1 6 6 H 1.08997 * 110.81280 * 56.65682 * 5 3 2 7 7 C 1.54890 * 110.75254 * 293.32528 * 5 3 2 8 8 C 1.54264 * 104.19626 * 203.74030 * 7 5 3 9 9 C 1.53884 * 106.59391 * 23.61119 * 8 7 5 10 10 H 1.08997 * 110.02934 * 240.71538 * 9 8 7 11 11 O 1.42904 * 110.02926 * 119.28509 * 9 8 7 12 12 C 1.35677 * 117.00030 * 84.34161 * 11 9 8 13 13 C 1.39308 * 119.81643 * 175.17292 * 12 11 9 14 14 C 1.36446 * 120.18434 * 179.75773 * 13 12 11 15 15 C 1.40836 * 119.80807 * 0.51239 * 14 13 12 16 16 C 1.41210 * 120.17673 * 179.71558 * 15 14 13 17 17 H 1.08003 * 119.99933 * 160.31541 * 16 15 14 18 18 C 1.39898 * 120.00122 * 340.32105 * 16 15 14 19 19 N 1.30874 * 119.99951 * 327.15524 * 18 16 15 20 20 Si 1.86798 * 119.99711 * 147.15809 * 18 16 15 21 21 H 1.48496 * 109.47228 * 94.99088 * 20 18 16 22 22 H 1.48504 * 109.46933 * 214.98594 * 20 18 16 23 23 H 1.48496 * 109.47359 * 334.98720 * 20 18 16 24 24 C 1.40831 * 119.64176 * 359.74696 * 15 14 13 25 25 C 1.36438 * 119.81271 * 359.97438 * 24 15 14 26 26 C 1.54259 * 106.60058 * 359.97438 * 9 8 7 27 27 H 1.09003 * 109.46769 * 60.00014 * 1 2 3 28 28 H 1.08996 * 109.47503 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47432 * 300.00621 * 1 2 3 30 30 H 1.09000 * 110.48728 * 322.42121 * 7 5 3 31 31 H 1.09002 * 110.48450 * 85.06538 * 7 5 3 32 32 H 1.08994 * 110.03695 * 264.32853 * 8 7 5 33 33 H 1.09000 * 110.07412 * 142.91408 * 8 7 5 34 34 H 1.07995 * 119.90829 * 0.02562 * 13 12 11 35 35 H 1.07997 * 120.09346 * 180.25298 * 14 13 12 36 36 H 0.96998 * 120.00238 * 180.02562 * 19 18 16 37 37 H 1.08003 * 120.09277 * 180.02562 * 24 15 14 38 38 H 1.08000 * 119.90564 * 179.97438 * 25 24 15 39 39 H 1.08999 * 110.48565 * 217.71092 * 26 9 8 40 40 H 1.09002 * 110.48741 * 95.07094 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9821 0.7361 -0.8520 7 6 4.1450 0.7306 1.3291 8 6 5.5256 1.4087 1.4465 9 6 5.4580 2.6927 0.6011 10 1 6.2002 2.6542 -0.1963 11 8 5.6857 3.8357 1.4279 12 6 6.9773 4.1778 1.6639 13 6 7.2671 5.3386 2.3774 14 6 8.5632 5.6872 2.6233 15 6 9.6095 4.8753 2.1441 16 6 10.9537 5.2318 2.3889 17 1 11.7320 4.4866 2.3155 18 6 11.2774 6.5503 2.7266 19 7 10.5819 7.5422 2.2314 20 14 12.7022 6.8949 3.8845 21 1 13.9276 7.1714 3.0927 22 1 12.3808 8.0746 4.7273 23 1 12.9307 5.7129 4.7538 24 6 9.3078 3.7063 1.4190 25 6 8.0063 3.3691 1.1867 26 6 4.0389 2.7496 -0.0011 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.5081 1.0145 2.1669 31 1 4.2549 -0.3528 1.2822 32 1 6.3007 0.7472 1.0595 33 1 5.7330 1.6575 2.4873 34 1 6.4637 5.9621 2.7407 35 1 8.7861 6.5853 3.1801 36 1 10.8065 8.4564 2.4652 37 1 10.1045 3.0782 1.0485 38 1 7.7733 2.4732 0.6304 39 1 4.0715 3.1399 -1.0183 40 1 3.3844 3.3595 0.6217 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225267466.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:36 Heat of formation + Delta-G solvation = -131.157961 kcal Electronic energy + Delta-G solvation = -22307.632495 eV Core-core repulsion = 18858.381915 eV Total energy + Delta-G solvation = -3449.250580 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.77749 -40.72838 -38.87838 -37.65889 -36.91519 -35.18619 -31.75907 -31.02738 -30.43493 -29.58716 -28.14696 -26.62686 -24.05010 -22.98954 -22.58650 -21.28589 -20.92281 -19.24126 -19.11424 -18.35476 -17.68718 -17.52327 -17.01799 -16.64240 -16.24317 -15.75619 -15.03493 -14.94957 -14.86858 -14.57171 -14.17673 -14.11662 -13.92248 -13.75975 -13.26485 -13.10973 -12.84913 -12.79870 -12.68564 -12.63895 -12.27510 -12.21767 -11.94155 -11.80533 -11.78073 -11.63201 -11.43316 -11.32464 -11.08014 -10.74595 -9.53487 -9.02443 -8.68507 -6.15432 0.98278 1.04755 1.10101 1.38960 1.48619 1.58630 1.66511 2.20994 2.62490 2.72263 3.30456 3.45473 3.71547 3.88055 4.03396 4.18134 4.30020 4.31009 4.32909 4.35682 4.39106 4.41922 4.44159 4.57109 4.71384 4.82766 4.84576 5.02653 5.03082 5.14237 5.20064 5.21557 5.26496 5.28757 5.34430 5.63074 5.66271 5.93639 6.07094 6.27401 6.57011 6.67439 6.85566 6.93523 7.16399 8.25428 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.054546 B = 0.002713 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.202044 B =10319.184239 C =10566.618618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.357 6.357 3 C 0.473 3.527 4 O -0.540 6.540 5 C -0.079 4.079 6 H 0.150 0.850 7 C -0.097 4.097 8 C -0.144 4.144 9 C 0.077 3.923 10 H 0.078 0.922 11 O -0.334 6.334 12 C -0.009 4.009 13 C -0.128 4.128 14 C -0.173 4.173 15 C 0.062 3.938 16 C -0.508 4.508 17 H 0.078 0.922 18 C 0.048 3.952 19 N -0.808 5.808 20 Si 0.971 3.029 21 H -0.260 1.260 22 H -0.266 1.266 23 H -0.259 1.259 24 C -0.217 4.217 25 C -0.151 4.151 26 C -0.101 4.101 27 H 0.062 0.938 28 H 0.134 0.866 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.062 0.938 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.291 0.709 37 H 0.105 0.895 38 H 0.132 0.868 39 H 0.088 0.912 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.090 -14.563 -3.808 19.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.273 6.273 3 C 0.317 3.683 4 O -0.429 6.429 5 C -0.098 4.098 6 H 0.168 0.832 7 C -0.134 4.134 8 C -0.181 4.181 9 C 0.020 3.980 10 H 0.096 0.904 11 O -0.250 6.250 12 C -0.053 4.053 13 C -0.147 4.147 14 C -0.193 4.193 15 C 0.059 3.941 16 C -0.536 4.536 17 H 0.096 0.904 18 C -0.171 4.171 19 N -0.433 5.433 20 Si 0.791 3.209 21 H -0.184 1.184 22 H -0.191 1.191 23 H -0.182 1.182 24 C -0.237 4.237 25 C -0.169 4.169 26 C -0.139 4.139 27 H 0.080 0.920 28 H 0.152 0.848 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.129 0.871 32 H 0.113 0.887 33 H 0.081 0.919 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.102 0.898 37 H 0.123 0.877 38 H 0.150 0.850 39 H 0.107 0.893 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.525 -13.933 -3.775 19.782 hybrid contribution 0.440 0.792 0.375 0.981 sum -13.085 -13.141 -3.400 18.853 Atomic orbital electron populations 1.23563 0.74934 1.05801 1.02390 1.86504 1.24835 1.32403 1.83552 1.23859 0.92260 0.81177 0.70965 1.90675 1.67930 1.37632 1.46707 1.22012 0.86165 0.98060 1.03528 0.83207 1.22253 0.94907 1.02057 0.94191 1.22719 0.98545 0.96035 1.00841 1.23077 0.97303 0.84985 0.92612 0.90416 1.85907 1.23631 1.47773 1.67716 1.18549 0.82659 0.97417 1.06677 1.19948 0.96198 0.96110 1.02424 1.20648 0.91564 1.01723 1.05347 1.17877 0.93828 0.92093 0.90251 1.19641 0.93671 0.95359 1.44892 0.90350 1.26750 1.00191 0.95164 0.94953 1.69975 1.39142 1.01289 1.32850 0.85388 0.77884 0.78854 0.78802 1.18416 1.19081 1.18235 1.20740 0.95615 1.01096 1.06223 1.20714 0.92518 1.00240 1.03468 1.22258 0.94180 0.95354 1.02095 0.91970 0.84756 0.92354 0.91938 0.87130 0.88680 0.91914 0.87883 0.88448 0.89815 0.87666 0.85018 0.89302 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.53 16 2 O -0.36 -6.41 10.57 -51.44 -0.54 -6.95 16 3 C 0.47 10.45 7.26 71.24 0.52 10.97 16 4 O -0.54 -15.75 15.47 21.98 0.34 -15.41 16 5 C -0.08 -1.48 3.40 -10.26 -0.03 -1.51 16 6 H 0.15 1.86 8.14 -2.39 -0.02 1.84 16 7 C -0.10 -1.76 6.26 31.67 0.20 -1.56 16 8 C -0.14 -3.41 5.78 31.32 0.18 -3.23 16 9 C 0.08 2.24 2.82 31.32 0.09 2.33 16 10 H 0.08 2.19 6.41 -2.39 -0.02 2.18 16 11 O -0.33 -13.39 9.70 -89.94 -0.87 -14.27 16 12 C -0.01 -0.43 6.63 22.79 0.15 -0.28 16 13 C -0.13 -6.38 9.92 22.11 0.22 -6.16 16 14 C -0.17 -9.39 8.75 22.49 0.20 -9.20 16 15 C 0.06 3.37 5.60 -21.28 -0.12 3.25 16 16 C -0.51 -27.49 8.95 23.40 0.21 -27.28 16 17 H 0.08 4.09 8.02 -2.91 -0.02 4.06 16 18 C 0.05 2.41 4.79 85.24 0.41 2.82 16 19 N -0.81 -42.55 11.65 21.82 0.25 -42.30 16 20 Si 0.97 37.94 29.66 68.60 2.03 39.97 16 21 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 22 H -0.27 -9.95 7.11 99.48 0.71 -9.25 16 23 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 24 C -0.22 -10.60 9.74 22.48 0.22 -10.38 16 25 C -0.15 -6.53 8.66 22.11 0.19 -6.34 16 26 C -0.10 -2.57 5.64 31.66 0.18 -2.39 16 27 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 28 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 30 H 0.06 1.28 8.04 -2.39 -0.02 1.26 16 31 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.09 1.86 8.00 -2.39 -0.02 1.84 16 33 H 0.06 1.79 7.95 -2.39 -0.02 1.77 16 34 H 0.10 4.81 8.06 -2.91 -0.02 4.79 16 35 H 0.10 5.44 6.38 -2.91 -0.02 5.42 16 36 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 37 H 0.11 4.76 8.06 -2.91 -0.02 4.73 16 38 H 0.13 4.63 5.59 -2.91 -0.02 4.61 16 39 H 0.09 2.06 8.14 -2.39 -0.02 2.05 16 40 H 0.07 2.12 7.37 -2.39 -0.02 2.10 16 Total: -1.00 -66.59 334.14 6.05 -60.53 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 1.04 Total: 25.85 kcal Atomic # 6 Polarization: -51.23 SS G_CDS: 3.80 Total: -47.43 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 0.25 Total: -42.30 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -1.08 Total: -36.63 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Total: -66.59 6.05 -60.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225267466.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.624 kcal (2) G-P(sol) polarization free energy of solvation -66.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds