Wall clock time and date at job start Tue Mar 31 2020 06:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36010 * 116.99823 * 2 1 4 4 C 1.38712 * 120.02434 * 0.02562 * 3 2 1 5 5 C 1.38770 * 120.53800 * 180.02562 * 4 3 2 6 6 C 1.36487 * 120.58117 * 359.97258 * 5 4 3 7 7 C 1.40770 * 120.02396 * 0.02562 * 6 5 4 8 8 C 1.41183 * 120.26396 * 180.02562 * 7 6 5 9 9 H 1.07991 * 119.99876 * 206.40410 * 8 7 6 10 10 C 1.39927 * 119.99842 * 26.40666 * 8 7 6 11 11 N 1.30872 * 119.99817 * 16.04374 * 10 8 7 12 12 Si 1.86797 * 120.00003 * 196.03825 * 10 8 7 13 13 H 1.48507 * 109.46992 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47097 * 119.99821 * 12 10 8 15 15 H 1.48493 * 109.47076 * 240.00315 * 12 10 8 16 16 C 1.38883 * 120.02082 * 179.97438 * 3 2 1 17 17 O 1.35740 * 120.28206 * 359.97438 * 16 3 2 18 18 C 1.42896 * 117.00181 * 272.47130 * 17 16 3 19 19 H 1.09004 * 109.62693 * 4.39971 * 18 17 16 20 20 C 1.53226 * 109.62669 * 244.02172 * 18 17 16 21 21 C 1.52959 * 109.40564 * 185.65622 * 20 18 17 22 22 C 1.52961 * 109.81833 * 63.59715 * 21 20 18 23 23 C 1.53229 * 109.40396 * 296.40566 * 22 21 20 24 24 C 1.51264 * 109.62775 * 124.77745 * 18 17 16 25 25 O 1.20759 * 120.84716 * 351.04855 * 24 18 17 26 26 H 1.09004 * 109.47441 * 59.99745 * 1 2 3 27 27 H 1.09002 * 109.46878 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46980 * 299.99929 * 1 2 3 29 29 H 1.07999 * 119.72683 * 359.97305 * 4 3 2 30 30 H 1.07999 * 119.70490 * 179.69641 * 5 4 3 31 31 H 1.08001 * 119.98845 * 180.02562 * 6 5 4 32 32 H 0.97003 * 119.99676 * 180.02562 * 11 10 8 33 33 H 1.08997 * 109.48189 * 305.63310 * 20 18 17 34 34 H 1.09005 * 109.48585 * 65.66521 * 20 18 17 35 35 H 1.09001 * 109.41525 * 183.70168 * 21 20 18 36 36 H 1.09001 * 109.41337 * 303.49435 * 21 20 18 37 37 H 1.09004 * 109.48245 * 56.37872 * 22 21 20 38 38 H 1.08993 * 109.48550 * 176.42035 * 22 21 20 39 39 H 1.08998 * 109.62668 * 174.33898 * 23 22 21 40 40 H 1.09005 * 109.62381 * 294.91086 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2914 2.3755 0.0005 5 6 1.9103 3.6176 0.0000 6 6 3.2717 3.7151 -0.0005 7 6 4.0613 2.5497 -0.0010 8 6 5.4699 2.6447 -0.0010 9 1 6.0650 1.8454 -0.4172 10 6 6.0949 3.7744 0.5385 11 7 5.4226 4.5867 1.3136 12 14 7.8890 4.1230 0.1523 13 1 8.4185 3.0613 -0.7409 14 1 8.0029 5.4403 -0.5238 15 1 8.6717 4.1449 1.4141 16 6 3.4333 1.2851 0.0005 17 8 4.1787 0.1506 0.0016 18 6 4.4885 -0.4209 1.2741 19 1 3.9843 0.1410 2.0604 20 6 6.0031 -0.3791 1.5020 21 6 6.3425 -1.1169 2.7982 22 6 5.9666 -2.5938 2.6680 23 6 4.4506 -2.7190 2.4839 24 6 4.0326 -1.8628 1.3081 25 8 3.3563 -2.3195 0.4179 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2132 2.3143 0.0005 30 1 1.3093 4.5149 -0.0045 31 1 3.7433 4.6867 -0.0005 32 1 5.8558 5.3701 1.6873 33 1 6.5100 -0.8611 0.6661 34 1 6.3311 0.6577 1.5771 35 1 7.4112 -1.0311 2.9948 36 1 5.7865 -0.6730 3.6240 37 1 6.4743 -3.0234 1.8044 38 1 6.2685 -3.1267 3.5696 39 1 4.1899 -3.7595 2.2905 40 1 3.9426 -2.3726 3.3840 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225841729.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:29 Heat of formation + Delta-G solvation = -105.205122 kcal Electronic energy + Delta-G solvation = -24116.614601 eV Core-core repulsion = 20668.489421 eV Total energy + Delta-G solvation = -3448.125181 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.67505 -38.73926 -36.89936 -35.97501 -35.35614 -33.50143 -30.33608 -29.47679 -28.63154 -27.67205 -26.41520 -25.05444 -22.73156 -21.41684 -20.77863 -20.55912 -18.78079 -17.87133 -16.67858 -15.86972 -15.74410 -15.48290 -15.09959 -14.78902 -14.71692 -14.28290 -14.06902 -13.60310 -13.26934 -13.14713 -12.94401 -12.67715 -12.55444 -11.98746 -11.62209 -11.51858 -11.42420 -11.25230 -11.10874 -10.86701 -10.78393 -10.62494 -10.47191 -10.42192 -10.16380 -9.93154 -9.71207 -9.26788 -9.17807 -8.31546 -7.46874 -6.96439 -6.79210 -4.47873 2.50124 2.58888 2.85875 3.01971 3.08209 3.13513 3.83750 4.22375 4.33265 4.51964 4.95329 4.96858 5.04712 5.14635 5.44420 5.56179 5.64133 5.68451 5.71384 5.74380 5.81777 5.93069 5.97556 6.05950 6.12887 6.17274 6.24395 6.27612 6.44466 6.60052 6.79491 6.82091 6.91229 7.06767 7.16206 7.59924 7.72039 7.86057 8.00346 8.08485 8.37969 8.40918 8.67466 8.76290 9.15172 10.03716 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.011728 B = 0.008374 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.864950 B = 3342.743633 C = 5361.287544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.310 6.310 3 C 0.136 3.864 4 C -0.320 4.320 5 C -0.075 4.075 6 C -0.179 4.179 7 C 0.131 3.869 8 C -0.436 4.436 9 H 0.089 0.911 10 C 0.075 3.925 11 N -0.785 5.785 12 Si 0.907 3.093 13 H -0.257 1.257 14 H -0.271 1.271 15 H -0.273 1.273 16 C -0.069 4.069 17 O -0.284 6.284 18 C 0.050 3.950 19 H 0.084 0.916 20 C -0.125 4.125 21 C -0.123 4.123 22 C -0.112 4.112 23 C -0.167 4.167 24 C 0.345 3.655 25 O -0.431 6.431 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.043 0.957 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.122 0.878 32 H 0.282 0.718 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.508 -6.373 4.781 7.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.224 6.224 3 C 0.091 3.909 4 C -0.340 4.340 5 C -0.094 4.094 6 C -0.198 4.198 7 C 0.127 3.873 8 C -0.465 4.465 9 H 0.107 0.893 10 C -0.144 4.144 11 N -0.409 5.409 12 Si 0.731 3.269 13 H -0.180 1.180 14 H -0.196 1.196 15 H -0.198 1.198 16 C -0.115 4.115 17 O -0.200 6.200 18 C -0.007 4.007 19 H 0.102 0.898 20 C -0.163 4.163 21 C -0.160 4.160 22 C -0.150 4.150 23 C -0.205 4.205 24 C 0.217 3.783 25 O -0.301 6.301 26 H 0.064 0.936 27 H 0.101 0.899 28 H 0.061 0.939 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.139 0.861 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.333 -6.695 4.282 7.954 hybrid contribution 0.311 0.639 0.310 0.775 sum 0.644 -6.056 4.592 7.628 Atomic orbital electron populations 1.22788 0.81074 1.01899 1.00389 1.86200 1.19107 1.27884 1.89201 1.19293 0.91517 0.83427 0.96629 1.20324 0.97345 0.92282 1.24047 1.20234 0.95058 0.95092 0.98973 1.20929 0.91994 0.98895 1.08015 1.17618 0.93755 0.88943 0.86969 1.19584 0.91513 1.02643 1.32738 0.89278 1.25992 1.00853 0.94870 0.92700 1.69859 1.38444 1.11350 1.21287 0.86267 0.81659 0.79604 0.79416 1.18017 1.19592 1.19832 1.17949 0.84858 0.86186 1.22504 1.86165 1.70494 1.39024 1.24268 1.22779 0.95908 0.92069 0.89980 0.89799 1.21931 0.94402 1.03044 0.96917 1.21585 1.01557 0.94492 0.98400 1.21526 0.93826 0.97493 1.02159 1.22346 0.98076 1.00826 0.99300 1.25335 0.76542 0.90773 0.85602 1.90368 1.28184 1.74824 1.36763 0.93634 0.89896 0.93865 0.88459 0.89046 0.86065 0.90702 0.91429 0.88910 0.91247 0.91529 0.91559 0.91246 0.89844 0.88939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 9.81 101.05 0.99 1.58 16 2 O -0.31 -7.09 10.28 -34.31 -0.35 -7.45 16 3 C 0.14 3.33 6.69 -39.17 -0.26 3.07 16 4 C -0.32 -7.32 9.05 -39.21 -0.35 -7.67 16 5 C -0.07 -1.74 9.96 -40.02 -0.40 -2.14 16 6 C -0.18 -4.52 8.62 -39.26 -0.34 -4.86 16 7 C 0.13 3.41 5.57 -106.70 -0.59 2.82 16 8 C -0.44 -10.98 7.78 -37.83 -0.29 -11.28 16 9 H 0.09 2.24 7.55 -52.49 -0.40 1.85 16 10 C 0.07 1.76 5.16 -17.33 -0.09 1.67 16 11 N -0.78 -18.94 10.98 55.55 0.61 -18.33 16 12 Si 0.91 17.70 29.59 -169.99 -5.03 12.67 16 13 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 14 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 15 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 16 C -0.07 -1.78 5.53 -38.22 -0.21 -1.99 16 17 O -0.28 -7.00 8.42 -46.21 -0.39 -7.39 16 18 C 0.05 1.02 3.06 -27.49 -0.08 0.93 16 19 H 0.08 1.75 7.73 -51.93 -0.40 1.35 16 20 C -0.13 -2.16 5.60 -26.64 -0.15 -2.30 16 21 C -0.12 -1.59 5.81 -26.77 -0.16 -1.75 16 22 C -0.11 -1.30 5.94 -26.63 -0.16 -1.46 16 23 C -0.17 -2.22 6.16 -27.45 -0.17 -2.39 16 24 C 0.34 6.42 6.68 -28.45 -0.19 6.23 16 25 O -0.43 -9.57 17.37 -13.14 -0.23 -9.80 16 26 H 0.05 0.74 7.66 -51.93 -0.40 0.34 16 27 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.04 0.69 7.66 -51.93 -0.40 0.29 16 29 H 0.10 1.96 6.27 -52.49 -0.33 1.63 16 30 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 31 H 0.12 3.11 6.23 -52.49 -0.33 2.78 16 32 H 0.28 6.17 8.30 -40.82 -0.34 5.83 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.09 1.76 7.06 -51.93 -0.37 1.40 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 331.04 15.07 4.99 4.99 Total: -1.00 -29.67 331.04 -8.41 -38.08 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -5.55 Total: 6.76 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: -2.46 Total: -19.54 kcal Atomic # 7 Polarization: -18.94 SS G_CDS: 0.61 Total: -18.33 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.97 Total: -24.64 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.67 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.67 -8.41 -38.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225841729.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.122 kcal (2) G-P(sol) polarization free energy of solvation -29.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds