Wall clock time and date at job start Tue Mar 31 2020 06:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36010 * 116.99823 * 2 1 4 4 C 1.38712 * 120.02434 * 0.02562 * 3 2 1 5 5 C 1.38770 * 120.53800 * 180.02562 * 4 3 2 6 6 C 1.36487 * 120.58117 * 359.97258 * 5 4 3 7 7 C 1.40770 * 120.02396 * 0.02562 * 6 5 4 8 8 C 1.41183 * 120.26396 * 180.02562 * 7 6 5 9 9 H 1.07991 * 119.99876 * 206.40410 * 8 7 6 10 10 C 1.39927 * 119.99842 * 26.40666 * 8 7 6 11 11 N 1.30872 * 119.99817 * 16.04374 * 10 8 7 12 12 Si 1.86797 * 120.00003 * 196.03825 * 10 8 7 13 13 H 1.48507 * 109.46992 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47097 * 119.99821 * 12 10 8 15 15 H 1.48493 * 109.47076 * 240.00315 * 12 10 8 16 16 C 1.38883 * 120.02082 * 179.97438 * 3 2 1 17 17 O 1.35740 * 120.28206 * 359.97438 * 16 3 2 18 18 C 1.42896 * 117.00181 * 272.47130 * 17 16 3 19 19 H 1.09004 * 109.62693 * 4.39971 * 18 17 16 20 20 C 1.53226 * 109.62669 * 244.02172 * 18 17 16 21 21 C 1.52959 * 109.40564 * 185.65622 * 20 18 17 22 22 C 1.52961 * 109.81833 * 63.59715 * 21 20 18 23 23 C 1.53229 * 109.40396 * 296.40566 * 22 21 20 24 24 C 1.51264 * 109.62775 * 124.77745 * 18 17 16 25 25 O 1.20759 * 120.84716 * 351.04855 * 24 18 17 26 26 H 1.09004 * 109.47441 * 59.99745 * 1 2 3 27 27 H 1.09002 * 109.46878 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46980 * 299.99929 * 1 2 3 29 29 H 1.07999 * 119.72683 * 359.97305 * 4 3 2 30 30 H 1.07999 * 119.70490 * 179.69641 * 5 4 3 31 31 H 1.08001 * 119.98845 * 180.02562 * 6 5 4 32 32 H 0.97003 * 119.99676 * 180.02562 * 11 10 8 33 33 H 1.08997 * 109.48189 * 305.63310 * 20 18 17 34 34 H 1.09005 * 109.48585 * 65.66521 * 20 18 17 35 35 H 1.09001 * 109.41525 * 183.70168 * 21 20 18 36 36 H 1.09001 * 109.41337 * 303.49435 * 21 20 18 37 37 H 1.09004 * 109.48245 * 56.37872 * 22 21 20 38 38 H 1.08993 * 109.48550 * 176.42035 * 22 21 20 39 39 H 1.08998 * 109.62668 * 174.33898 * 23 22 21 40 40 H 1.09005 * 109.62381 * 294.91086 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2914 2.3755 0.0005 5 6 1.9103 3.6176 0.0000 6 6 3.2717 3.7151 -0.0005 7 6 4.0613 2.5497 -0.0010 8 6 5.4699 2.6447 -0.0010 9 1 6.0650 1.8454 -0.4172 10 6 6.0949 3.7744 0.5385 11 7 5.4226 4.5867 1.3136 12 14 7.8890 4.1230 0.1523 13 1 8.4185 3.0613 -0.7409 14 1 8.0029 5.4403 -0.5238 15 1 8.6717 4.1449 1.4141 16 6 3.4333 1.2851 0.0005 17 8 4.1787 0.1506 0.0016 18 6 4.4885 -0.4209 1.2741 19 1 3.9843 0.1410 2.0604 20 6 6.0031 -0.3791 1.5020 21 6 6.3425 -1.1169 2.7982 22 6 5.9666 -2.5938 2.6680 23 6 4.4506 -2.7190 2.4839 24 6 4.0326 -1.8628 1.3081 25 8 3.3563 -2.3195 0.4179 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2132 2.3143 0.0005 30 1 1.3093 4.5149 -0.0045 31 1 3.7433 4.6867 -0.0005 32 1 5.8558 5.3701 1.6873 33 1 6.5100 -0.8611 0.6661 34 1 6.3311 0.6577 1.5771 35 1 7.4112 -1.0311 2.9948 36 1 5.7865 -0.6730 3.6240 37 1 6.4743 -3.0234 1.8044 38 1 6.2685 -3.1267 3.5696 39 1 4.1899 -3.7595 2.2905 40 1 3.9426 -2.3726 3.3840 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225841729.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:28 Heat of formation + Delta-G solvation = -120.680378 kcal Electronic energy + Delta-G solvation = -24117.285659 eV Core-core repulsion = 20668.489421 eV Total energy + Delta-G solvation = -3448.796238 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.26990 -40.40003 -38.62421 -37.57783 -36.84078 -35.32323 -31.75278 -31.23370 -30.23516 -29.10630 -28.03962 -26.85340 -24.08181 -22.83427 -22.56538 -22.19069 -20.14610 -19.66417 -18.42615 -17.62467 -17.33413 -17.17946 -16.57273 -16.39815 -16.30144 -15.63180 -15.54928 -15.10899 -14.92082 -14.60728 -14.49359 -14.08722 -13.96028 -13.62361 -13.34799 -13.02434 -12.89373 -12.73794 -12.62510 -12.41646 -12.20968 -12.10426 -11.95080 -11.71534 -11.62155 -11.54424 -11.48320 -11.02908 -10.83305 -9.89784 -9.34726 -8.78002 -8.61656 -6.38029 0.77855 1.01330 1.05152 1.39603 1.49591 1.54186 2.19615 2.59762 2.71358 2.85483 3.37862 3.70588 3.84845 3.96905 4.07456 4.20099 4.24339 4.29033 4.40014 4.46348 4.49580 4.56979 4.62113 4.70750 4.84203 4.93852 4.99201 5.04241 5.05044 5.12133 5.20013 5.25780 5.31785 5.39679 5.44421 5.74206 5.89982 6.00822 6.10113 6.46622 6.58216 6.70041 6.79659 6.90029 7.32650 8.27142 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.011728 B = 0.008374 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.864950 B = 3342.743633 C = 5361.287544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.333 6.333 3 C 0.124 3.876 4 C -0.318 4.318 5 C -0.075 4.075 6 C -0.202 4.202 7 C 0.103 3.897 8 C -0.458 4.458 9 H 0.075 0.925 10 C 0.043 3.957 11 N -0.809 5.809 12 Si 0.975 3.025 13 H -0.262 1.262 14 H -0.264 1.264 15 H -0.259 1.259 16 C -0.091 4.091 17 O -0.312 6.312 18 C 0.041 3.959 19 H 0.068 0.932 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.106 4.106 23 C -0.156 4.156 24 C 0.345 3.655 25 O -0.475 6.475 26 H 0.056 0.944 27 H 0.108 0.892 28 H 0.057 0.943 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.111 0.889 32 H 0.292 0.708 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.996 -7.308 6.355 9.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.247 6.247 3 C 0.079 3.921 4 C -0.338 4.338 5 C -0.093 4.093 6 C -0.222 4.222 7 C 0.100 3.900 8 C -0.486 4.486 9 H 0.093 0.907 10 C -0.174 4.174 11 N -0.434 5.434 12 Si 0.796 3.204 13 H -0.185 1.185 14 H -0.188 1.188 15 H -0.183 1.183 16 C -0.136 4.136 17 O -0.228 6.228 18 C -0.016 4.016 19 H 0.086 0.914 20 C -0.157 4.157 21 C -0.154 4.154 22 C -0.143 4.143 23 C -0.193 4.193 24 C 0.221 3.779 25 O -0.349 6.349 26 H 0.074 0.926 27 H 0.127 0.873 28 H 0.075 0.925 29 H 0.145 0.855 30 H 0.139 0.861 31 H 0.129 0.871 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.111 0.889 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.128 0.872 39 H 0.118 0.882 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.805 -7.630 5.879 9.666 hybrid contribution 0.050 0.889 -0.172 0.906 sum 0.854 -6.741 5.707 8.874 Atomic orbital electron populations 1.23128 0.78216 1.04092 1.01518 1.86166 1.22128 1.27303 1.89068 1.19467 0.91523 0.84571 0.96584 1.20637 0.98785 0.91547 1.22841 1.20547 0.94585 0.96508 0.97701 1.20930 0.93049 0.98187 1.09991 1.17963 0.94617 0.89638 0.87816 1.19594 0.91414 1.03512 1.34080 0.90651 1.26706 1.04893 0.93979 0.91865 1.69880 1.40309 1.11764 1.21424 0.85252 0.76409 0.79238 0.79547 1.18534 1.18816 1.18285 1.18241 0.85940 0.86443 1.23010 1.86042 1.70809 1.38944 1.27035 1.23077 0.97737 0.93125 0.87690 0.91377 1.21887 0.92132 1.02283 0.99447 1.21595 1.03140 0.95087 0.95615 1.21559 0.92116 0.96490 1.04141 1.22367 0.99601 1.00343 0.97019 1.25888 0.75074 0.90289 0.86647 1.90347 1.30248 1.75323 1.38948 0.92577 0.87329 0.92475 0.85483 0.86133 0.87066 0.89710 0.92025 0.91506 0.88945 0.90876 0.91608 0.87151 0.88155 0.86648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 9.81 113.37 1.11 1.95 16 2 O -0.33 -15.36 10.28 -79.76 -0.82 -16.18 16 3 C 0.12 6.19 6.69 22.54 0.15 6.34 16 4 C -0.32 -14.47 9.05 22.51 0.20 -14.27 16 5 C -0.07 -3.49 9.96 21.99 0.22 -3.27 16 6 C -0.20 -10.57 8.62 22.48 0.19 -10.37 16 7 C 0.10 5.65 5.57 -21.21 -0.12 5.53 16 8 C -0.46 -24.22 7.78 23.40 0.18 -24.04 16 9 H 0.08 4.05 7.55 -2.92 -0.02 4.03 16 10 C 0.04 2.05 5.16 85.25 0.44 2.49 16 11 N -0.81 -39.83 10.98 21.83 0.24 -39.59 16 12 Si 0.98 36.65 29.59 68.60 2.03 38.68 16 13 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 14 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 15 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 16 C -0.09 -4.91 5.53 23.15 0.13 -4.78 16 17 O -0.31 -16.27 8.42 -64.56 -0.54 -16.81 16 18 C 0.04 1.72 3.06 30.10 0.09 1.81 16 19 H 0.07 3.01 7.73 -2.38 -0.02 2.99 16 20 C -0.12 -4.21 5.60 30.66 0.17 -4.04 16 21 C -0.12 -2.78 5.81 30.57 0.18 -2.60 16 22 C -0.11 -2.06 5.94 30.66 0.18 -1.88 16 23 C -0.16 -3.72 6.16 30.13 0.19 -3.53 16 24 C 0.35 12.88 6.68 29.48 0.20 13.08 16 25 O -0.47 -21.51 17.37 16.86 0.29 -21.21 16 26 H 0.06 1.72 7.66 -2.39 -0.02 1.70 16 27 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 28 H 0.06 1.72 7.66 -2.39 -0.02 1.70 16 29 H 0.13 4.89 6.27 -2.91 -0.02 4.87 16 30 H 0.12 4.78 8.06 -2.91 -0.02 4.75 16 31 H 0.11 5.92 6.23 -2.91 -0.02 5.90 16 32 H 0.29 12.84 8.30 -92.71 -0.77 12.07 16 33 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.07 2.67 7.06 -2.38 -0.02 2.65 16 35 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.12 2.29 8.14 -2.38 -0.02 2.27 16 Total: -1.00 -68.57 331.04 5.76 -62.82 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 1.04 Total: 29.88 kcal Atomic # 6 Polarization: -41.10 SS G_CDS: 3.52 Total: -37.58 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.24 Total: -39.59 kcal Atomic # 8 Polarization: -53.13 SS G_CDS: -1.07 Total: -54.20 kcal Atomic # 14 Polarization: 36.65 SS G_CDS: 2.03 Total: 38.68 kcal Total: -68.57 5.76 -62.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225841729.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.865 kcal (2) G-P(sol) polarization free energy of solvation -68.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds