Wall clock time and date at job start Tue Mar 31 2020 06:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36012 * 117.00549 * 2 1 4 4 C 1.38710 * 120.01735 * 0.25816 * 3 2 1 5 5 C 1.38775 * 120.53236 * 180.30005 * 4 3 2 6 6 C 1.36490 * 120.58074 * 359.69740 * 5 4 3 7 7 C 1.40758 * 120.02509 * 0.02581 * 6 5 4 8 8 C 1.41182 * 120.26524 * 179.97438 * 7 6 5 9 9 H 1.08003 * 120.00079 * 153.87310 * 8 7 6 10 10 C 1.39919 * 120.00094 * 333.87304 * 8 7 6 11 11 N 1.30875 * 119.99626 * 342.98795 * 10 8 7 12 12 Si 1.86802 * 120.00294 * 162.98732 * 10 8 7 13 13 H 1.48506 * 109.46950 * 60.00019 * 12 10 8 14 14 H 1.48497 * 109.46992 * 179.97438 * 12 10 8 15 15 H 1.48493 * 109.47141 * 300.00322 * 12 10 8 16 16 C 1.38874 * 120.02268 * 180.02562 * 3 2 1 17 17 O 1.35736 * 120.28564 * 0.02562 * 16 3 2 18 18 C 1.42896 * 117.00181 * 88.61109 * 17 16 3 19 19 H 1.09002 * 109.62432 * 355.98955 * 18 17 16 20 20 C 1.53231 * 109.78804 * 116.46687 * 18 17 16 21 21 C 1.52955 * 109.40999 * 174.43441 * 20 18 17 22 22 C 1.52956 * 109.81779 * 296.40957 * 21 20 18 23 23 C 1.52797 * 109.48831 * 63.46335 * 22 21 20 24 24 C 1.51269 * 108.75999 * 305.60589 * 23 22 21 25 25 O 1.20763 * 120.85127 * 231.30987 * 24 23 22 26 26 H 1.08990 * 109.47617 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46428 * 299.99975 * 1 2 3 28 28 H 1.09001 * 109.47030 * 59.99206 * 1 2 3 29 29 H 1.07995 * 119.73499 * 0.02562 * 4 3 2 30 30 H 1.08003 * 119.70488 * 179.72401 * 5 4 3 31 31 H 1.08004 * 119.98380 * 180.02562 * 6 5 4 32 32 H 0.97003 * 119.99299 * 180.02562 * 11 10 8 33 33 H 1.08997 * 109.48336 * 294.41992 * 20 18 17 34 34 H 1.09000 * 109.47653 * 54.45494 * 20 18 17 35 35 H 1.09006 * 109.41004 * 56.50731 * 21 20 18 36 36 H 1.08993 * 109.41488 * 176.29751 * 21 20 18 37 37 H 1.09001 * 109.48218 * 183.57929 * 22 21 20 38 38 H 1.09000 * 109.48181 * 303.59945 * 22 21 20 39 39 H 1.09000 * 109.55977 * 185.79545 * 23 22 21 40 40 H 1.08991 * 109.46425 * 65.36683 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2118 0.0000 4 6 1.2916 2.3754 0.0054 5 6 1.9105 3.6175 -0.0008 6 6 3.2720 3.7149 -0.0061 7 6 4.0614 2.5495 -0.0059 8 6 5.4701 2.6443 -0.0119 9 1 6.0669 1.8440 0.3999 10 6 6.0928 3.7752 -0.5514 11 7 5.4225 4.5791 -1.3370 12 14 7.8810 4.1375 -0.1504 13 1 8.7295 3.0079 -0.6081 14 1 8.3007 5.3830 -0.8416 15 1 8.0344 4.3090 1.3166 16 6 3.4334 1.2849 -0.0005 17 8 4.1787 0.1505 -0.0016 18 6 4.5085 -0.4079 -1.2749 19 1 4.0224 0.1664 -2.0635 20 6 6.0271 -0.3769 -1.4772 21 6 6.3815 -1.1001 -2.7776 22 6 5.9902 -2.5751 -2.6739 23 6 4.4750 -2.6905 -2.5138 24 6 4.0448 -1.8465 -1.3345 25 8 3.3528 -2.3107 -0.4604 26 1 -0.3634 -1.0275 -0.0005 27 1 -0.3632 0.5139 0.8901 28 1 -0.3633 0.5140 -0.8899 29 1 0.2134 2.3143 0.0100 30 1 1.3096 4.5149 -0.0010 31 1 3.7436 4.6865 -0.0105 32 1 5.8544 5.3629 -1.7113 33 1 6.3655 0.6577 -1.5328 34 1 6.5156 -0.8748 -0.6396 35 1 5.8433 -0.6400 -3.6063 36 1 7.4540 -1.0214 -2.9552 37 1 6.3025 -3.0985 -3.5776 38 1 6.4798 -3.0211 -1.8081 39 1 4.2050 -3.7316 -2.3369 40 1 3.9858 -2.3313 -3.4191 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225841730.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:30 Heat of formation + Delta-G solvation = -120.651124 kcal Electronic energy + Delta-G solvation = -24122.159218 eV Core-core repulsion = 20673.364249 eV Total energy + Delta-G solvation = -3448.794970 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.27362 -40.40348 -38.62564 -37.57267 -36.85772 -35.32645 -31.76375 -31.24652 -30.23796 -29.10209 -28.03782 -26.85127 -24.07532 -22.83869 -22.56870 -22.18941 -20.14703 -19.66130 -18.42517 -17.61885 -17.34161 -17.16873 -16.58357 -16.39988 -16.30266 -15.63880 -15.54721 -15.11078 -14.91905 -14.60369 -14.49583 -14.09168 -13.96891 -13.61785 -13.34410 -13.01769 -12.90249 -12.72969 -12.63656 -12.39817 -12.20484 -12.11117 -11.96421 -11.71291 -11.62502 -11.54027 -11.48554 -11.01693 -10.83652 -9.89527 -9.35177 -8.78294 -8.62082 -6.37831 0.78618 1.01860 1.05190 1.39410 1.49417 1.53914 2.19086 2.60079 2.71332 2.85664 3.37918 3.70687 3.84441 3.97362 4.07154 4.20927 4.24406 4.29169 4.40080 4.46493 4.49861 4.57210 4.62111 4.71000 4.84379 4.93736 4.98926 5.04008 5.04961 5.11942 5.19942 5.25536 5.31394 5.39779 5.44143 5.74197 5.89907 6.00890 6.09965 6.46221 6.58069 6.70157 6.79525 6.89669 7.32891 8.26430 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.011696 B = 0.008409 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.387734 B = 3329.032630 C = 5356.877213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.332 6.332 3 C 0.125 3.875 4 C -0.320 4.320 5 C -0.074 4.074 6 C -0.203 4.203 7 C 0.103 3.897 8 C -0.459 4.459 9 H 0.077 0.923 10 C 0.044 3.956 11 N -0.808 5.808 12 Si 0.974 3.026 13 H -0.254 1.254 14 H -0.263 1.263 15 H -0.265 1.265 16 C -0.092 4.092 17 O -0.311 6.311 18 C 0.041 3.959 19 H 0.068 0.932 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.106 4.106 23 C -0.156 4.156 24 C 0.345 3.655 25 O -0.475 6.475 26 H 0.108 0.892 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.111 0.889 32 H 0.292 0.708 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.065 0.935 39 H 0.100 0.900 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.151 -7.232 -6.275 9.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.246 6.246 3 C 0.080 3.920 4 C -0.339 4.339 5 C -0.093 4.093 6 C -0.223 4.223 7 C 0.100 3.900 8 C -0.487 4.487 9 H 0.095 0.905 10 C -0.174 4.174 11 N -0.432 5.432 12 Si 0.795 3.205 13 H -0.178 1.178 14 H -0.188 1.188 15 H -0.190 1.190 16 C -0.137 4.137 17 O -0.228 6.228 18 C -0.016 4.016 19 H 0.086 0.914 20 C -0.158 4.158 21 C -0.154 4.154 22 C -0.143 4.143 23 C -0.193 4.193 24 C 0.221 3.779 25 O -0.348 6.348 26 H 0.127 0.873 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.145 0.855 30 H 0.139 0.861 31 H 0.129 0.871 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.129 0.871 38 H 0.084 0.916 39 H 0.118 0.882 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.947 -7.558 -5.817 9.584 hybrid contribution 0.051 0.887 0.178 0.906 sum 0.998 -6.671 -5.639 8.792 Atomic orbital electron populations 1.23126 0.78229 1.04086 1.01507 1.86168 1.22114 1.27311 1.89055 1.19463 0.91511 0.84561 0.96502 1.20631 0.98777 0.91549 1.22972 1.20545 0.94581 0.96505 0.97654 1.20914 0.93073 0.98141 1.10145 1.17955 0.94598 0.89655 0.87789 1.19556 0.91415 1.03491 1.34240 0.90526 1.26705 1.04829 0.94003 0.91836 1.69876 1.40454 1.11951 1.20946 0.85359 0.76522 0.79045 0.79620 1.17802 1.18755 1.18962 1.18228 0.85947 0.86414 1.23157 1.86043 1.70685 1.39131 1.26911 1.23067 0.97588 0.93219 0.87730 0.91405 1.21889 0.92057 1.02338 0.99484 1.21589 1.03021 0.95199 0.95616 1.21484 0.92134 0.96494 1.04219 1.22274 0.99540 1.00523 0.97007 1.25881 0.75381 0.90155 0.86517 1.90348 1.29956 1.74651 1.39884 0.87333 0.92569 0.92501 0.85501 0.86145 0.87139 0.89668 0.91478 0.92006 0.90895 0.88997 0.87147 0.91630 0.88156 0.86658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 9.81 113.37 1.11 1.95 16 2 O -0.33 -15.39 10.28 -79.78 -0.82 -16.21 16 3 C 0.12 6.25 6.69 22.54 0.15 6.40 16 4 C -0.32 -14.55 9.05 22.51 0.20 -14.34 16 5 C -0.07 -3.47 9.96 21.99 0.22 -3.25 16 6 C -0.20 -10.63 8.62 22.48 0.19 -10.43 16 7 C 0.10 5.66 5.57 -21.21 -0.12 5.55 16 8 C -0.46 -24.20 7.73 23.40 0.18 -24.02 16 9 H 0.08 4.08 7.44 -2.91 -0.02 4.06 16 10 C 0.04 2.09 5.14 85.24 0.44 2.53 16 11 N -0.81 -39.73 11.02 21.82 0.24 -39.49 16 12 Si 0.97 36.50 29.59 68.60 2.03 38.53 16 13 H -0.25 -9.11 7.11 99.48 0.71 -8.40 16 14 H -0.26 -9.19 7.11 99.48 0.71 -8.49 16 15 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 16 C -0.09 -4.96 5.53 23.15 0.13 -4.84 16 17 O -0.31 -16.22 8.42 -64.52 -0.54 -16.77 16 18 C 0.04 1.73 3.07 30.11 0.09 1.83 16 19 H 0.07 3.00 7.73 -2.39 -0.02 2.99 16 20 C -0.12 -4.22 5.60 30.66 0.17 -4.05 16 21 C -0.12 -2.80 5.81 30.56 0.18 -2.62 16 22 C -0.11 -2.08 5.92 30.51 0.18 -1.90 16 23 C -0.16 -3.74 6.14 29.96 0.18 -3.55 16 24 C 0.34 12.89 6.68 29.46 0.20 13.09 16 25 O -0.47 -21.50 17.37 16.85 0.29 -21.21 16 26 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 27 H 0.06 1.73 7.65 -2.38 -0.02 1.71 16 28 H 0.06 1.72 7.67 -2.39 -0.02 1.70 16 29 H 0.13 4.89 6.27 -2.91 -0.02 4.87 16 30 H 0.12 4.78 8.06 -2.91 -0.02 4.75 16 31 H 0.11 5.87 6.25 -2.91 -0.02 5.85 16 32 H 0.29 12.92 8.30 -92.71 -0.77 12.15 16 33 H 0.07 2.69 6.89 -2.39 -0.02 2.67 16 34 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -68.28 330.70 5.75 -62.53 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 1.04 Total: 30.28 kcal Atomic # 6 Polarization: -41.17 SS G_CDS: 3.51 Total: -37.65 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.24 Total: -39.49 kcal Atomic # 8 Polarization: -53.12 SS G_CDS: -1.07 Total: -54.19 kcal Atomic # 14 Polarization: 36.50 SS G_CDS: 2.03 Total: 38.53 kcal Total: -68.28 5.75 -62.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225841730.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.125 kcal (2) G-P(sol) polarization free energy of solvation -68.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds