Wall clock time and date at job start Tue Mar 31 2020 06:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.36006 * 116.99824 * 2 1 4 4 C 1.38705 * 120.02719 * 0.02562 * 3 2 1 5 5 C 1.38769 * 120.53676 * 179.71985 * 4 3 2 6 6 C 1.36482 * 120.58502 * 0.25864 * 5 4 3 7 7 C 1.40769 * 120.02091 * 0.02562 * 6 5 4 8 8 C 1.41181 * 120.26290 * 179.97438 * 7 6 5 9 9 H 1.08005 * 119.99649 * 204.76126 * 8 7 6 10 10 C 1.39921 * 120.00449 * 24.75333 * 8 7 6 11 11 N 1.30870 * 119.99666 * 17.71095 * 10 8 7 12 12 Si 1.86796 * 120.00412 * 197.70470 * 10 8 7 13 13 H 1.48503 * 109.47219 * 0.02562 * 12 10 8 14 14 H 1.48494 * 109.47173 * 120.00157 * 12 10 8 15 15 H 1.48501 * 109.47207 * 240.00628 * 12 10 8 16 16 C 1.38888 * 120.02031 * 180.27558 * 3 2 1 17 17 O 1.35746 * 120.28068 * 359.97438 * 16 3 2 18 18 C 1.42895 * 116.99799 * 270.31513 * 17 16 3 19 19 C 1.53008 * 109.47056 * 180.02562 * 18 17 16 20 20 H 1.09004 * 109.70086 * 304.41874 * 19 18 17 21 21 C 1.53500 * 109.70769 * 183.79150 * 19 18 17 22 22 C 1.53269 * 108.14628 * 177.89605 * 21 19 18 23 23 C 1.50448 * 109.43503 * 46.83985 * 22 21 19 24 24 C 1.30679 * 122.49659 * 342.51751 * 23 22 21 25 25 O 1.35138 * 123.34305 * 0.41217 * 24 23 22 26 26 H 1.09002 * 109.47149 * 59.99653 * 1 2 3 27 27 H 1.08993 * 109.46961 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46872 * 299.99797 * 1 2 3 29 29 H 1.08006 * 119.72547 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.70539 * 180.27801 * 5 4 3 31 31 H 1.07996 * 119.99233 * 180.02562 * 6 5 4 32 32 H 0.97001 * 119.99883 * 180.02562 * 11 10 8 33 33 H 1.08999 * 109.47397 * 300.00052 * 18 17 16 34 34 H 1.08997 * 109.47090 * 60.00245 * 18 17 16 35 35 H 1.08998 * 109.72478 * 297.57942 * 21 19 18 36 36 H 1.09002 * 109.72385 * 58.24541 * 21 19 18 37 37 H 1.08991 * 109.47400 * 286.84783 * 22 21 19 38 38 H 1.08996 * 109.48458 * 166.82764 * 22 21 19 39 39 H 1.07998 * 118.75109 * 162.54274 * 23 22 21 40 40 H 1.08000 * 118.33102 * 180.43727 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2916 2.3755 0.0005 5 6 1.9105 3.6175 0.0064 6 6 3.2718 3.7150 0.0064 7 6 4.0614 2.5496 -0.0001 8 6 5.4700 2.6445 -0.0007 9 1 6.0656 1.8353 -0.3970 10 6 6.0945 3.7868 0.5120 11 7 5.4308 4.6005 1.2931 12 14 7.8756 4.1503 0.0819 13 1 8.3966 3.0844 -0.8112 14 1 7.9598 5.4610 -0.6110 15 1 8.6860 4.1947 1.3254 16 6 3.4334 1.2851 -0.0058 17 8 4.1787 0.1505 -0.0109 18 6 4.5345 -0.3977 1.2598 19 6 5.3679 -1.6642 1.0536 20 1 4.8193 -2.3671 0.4267 21 6 5.6731 -2.3099 2.4123 22 6 6.4617 -3.6000 2.1614 23 6 7.5663 -3.3280 1.1768 24 6 7.5767 -2.2717 0.4075 25 8 6.6097 -1.3279 0.4285 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 0.2132 2.3142 0.0005 30 1 1.3096 4.5148 0.0113 31 1 3.7435 4.6865 0.0114 32 1 5.8636 5.3927 1.6482 33 1 5.1173 0.3331 1.8205 34 1 3.6297 -0.6442 1.8153 35 1 6.2678 -1.6269 3.0190 36 1 4.7407 -2.5429 2.9266 37 1 5.7942 -4.3611 1.7577 38 1 6.8899 -3.9527 3.0996 39 1 8.3813 -4.0327 1.1028 40 1 8.3998 -2.1468 -0.2804 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225842890.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:26 Heat of formation + Delta-G solvation = -83.663896 kcal Electronic energy + Delta-G solvation = -23470.863798 eV Core-core repulsion = 20023.672715 eV Total energy + Delta-G solvation = -3447.191083 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.81456 -38.98238 -36.99420 -35.69751 -33.70081 -33.46794 -31.96793 -29.45035 -28.64037 -27.02223 -26.40979 -25.02568 -23.64901 -22.21525 -20.84018 -20.57402 -18.65733 -17.85938 -16.67084 -16.41129 -15.85136 -15.75032 -15.36399 -15.07934 -14.73408 -14.72669 -13.94413 -13.63087 -13.40035 -13.21701 -13.01955 -12.73422 -12.71168 -12.13487 -11.95792 -11.73033 -11.43723 -11.19195 -11.10294 -10.78499 -10.70727 -10.53473 -10.30507 -10.27251 -10.19832 -9.94675 -9.53052 -9.17556 -8.58126 -8.15053 -7.43949 -6.94179 -6.77563 -4.41173 2.51200 2.63732 2.89462 3.07052 3.15163 3.18862 3.77588 3.90693 4.22338 4.45148 4.63816 4.89342 5.07482 5.25355 5.47883 5.50780 5.62419 5.64489 5.65914 5.72825 5.76150 5.86547 5.92534 6.00755 6.10710 6.18698 6.24159 6.42141 6.46834 6.58870 6.73810 6.83336 6.96042 7.10761 7.21084 7.62560 7.74967 7.90650 7.96422 8.04697 8.40434 8.44913 8.73148 8.81708 9.20078 10.07386 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.010332 B = 0.007436 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.281832 B = 3764.634693 C = 6118.861867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.323 6.323 3 C 0.135 3.865 4 C -0.322 4.322 5 C -0.076 4.076 6 C -0.180 4.180 7 C 0.126 3.874 8 C -0.431 4.431 9 H 0.092 0.908 10 C 0.075 3.925 11 N -0.784 5.784 12 Si 0.910 3.090 13 H -0.255 1.255 14 H -0.271 1.271 15 H -0.274 1.274 16 C -0.066 4.066 17 O -0.302 6.302 18 C 0.070 3.930 19 C 0.098 3.902 20 H 0.074 0.926 21 C -0.154 4.154 22 C -0.074 4.074 23 C -0.306 4.306 24 C 0.068 3.932 25 O -0.301 6.301 26 H 0.046 0.954 27 H 0.083 0.917 28 H 0.045 0.955 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.122 0.878 32 H 0.282 0.718 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.115 0.885 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.094 -9.011 1.844 9.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.237 6.237 3 C 0.090 3.910 4 C -0.342 4.342 5 C -0.095 4.095 6 C -0.200 4.200 7 C 0.123 3.877 8 C -0.459 4.459 9 H 0.110 0.890 10 C -0.145 4.145 11 N -0.409 5.409 12 Si 0.734 3.266 13 H -0.179 1.179 14 H -0.196 1.196 15 H -0.199 1.199 16 C -0.111 4.111 17 O -0.218 6.218 18 C -0.005 4.005 19 C 0.042 3.958 20 H 0.092 0.908 21 C -0.191 4.191 22 C -0.111 4.111 23 C -0.325 4.325 24 C 0.004 3.996 25 O -0.214 6.214 26 H 0.064 0.936 27 H 0.101 0.899 28 H 0.063 0.937 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.139 0.861 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.133 0.867 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.089 -8.880 1.763 9.054 hybrid contribution 0.370 0.277 0.332 0.569 sum 0.459 -8.603 2.094 8.867 Atomic orbital electron populations 1.22787 0.80838 1.01863 1.00640 1.86060 1.19404 1.28609 1.89620 1.19207 0.91286 0.83149 0.97340 1.20269 0.97226 0.92262 1.24431 1.20213 0.95016 0.95088 0.99168 1.20946 0.92028 0.98925 1.08052 1.17641 0.93749 0.89125 0.87201 1.19682 0.91631 1.01681 1.32943 0.88969 1.26029 1.00960 0.94931 0.92532 1.69872 1.38607 1.11038 1.21352 0.86217 0.81502 0.79416 0.79512 1.17874 1.19627 1.19902 1.17840 0.84746 0.86252 1.22290 1.86074 1.70805 1.39512 1.25449 1.22516 0.96100 0.93110 0.88807 1.22521 0.83216 0.97097 0.92953 0.90798 1.22213 1.01555 0.97923 0.97449 1.20262 0.95725 0.96883 0.98274 1.22381 1.03805 1.02465 1.03891 1.22107 0.91999 0.89070 0.96419 1.86143 1.22461 1.38389 1.74392 0.93573 0.89881 0.93676 0.88506 0.89078 0.86058 0.90715 0.92323 0.92709 0.90461 0.90203 0.91601 0.91053 0.86738 0.83111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.81 101.05 0.99 1.54 16 2 O -0.32 -6.93 10.28 -34.30 -0.35 -7.29 16 3 C 0.13 3.24 6.69 -39.17 -0.26 2.98 16 4 C -0.32 -7.33 9.05 -39.21 -0.35 -7.68 16 5 C -0.08 -1.79 9.96 -40.02 -0.40 -2.18 16 6 C -0.18 -4.66 8.64 -39.26 -0.34 -5.00 16 7 C 0.13 3.42 5.58 -106.70 -0.60 2.82 16 8 C -0.43 -11.54 8.72 -37.84 -0.33 -11.87 16 9 H 0.09 2.52 7.65 -52.48 -0.40 2.12 16 10 C 0.07 1.85 5.14 -17.33 -0.09 1.77 16 11 N -0.78 -19.79 10.96 55.55 0.61 -19.18 16 12 Si 0.91 18.79 29.59 -169.99 -5.03 13.76 16 13 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 14 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 15 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 16 C -0.07 -1.71 5.77 -38.22 -0.22 -1.93 16 17 O -0.30 -7.51 9.11 -39.69 -0.36 -7.87 16 18 C 0.07 1.47 5.75 37.16 0.21 1.68 16 19 C 0.10 1.73 3.14 -26.47 -0.08 1.65 16 20 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 21 C -0.15 -2.17 5.55 -26.33 -0.15 -2.31 16 22 C -0.07 -0.92 6.23 -27.87 -0.17 -1.09 16 23 C -0.31 -4.02 9.97 -36.06 -0.36 -4.38 16 24 C 0.07 1.02 10.88 29.10 0.32 1.34 16 25 O -0.30 -5.73 10.02 -21.45 -0.21 -5.95 16 26 H 0.05 0.69 7.66 -51.93 -0.40 0.30 16 27 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.04 0.67 7.66 -51.93 -0.40 0.28 16 29 H 0.10 1.92 6.27 -52.48 -0.33 1.60 16 30 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 31 H 0.12 3.19 6.16 -52.49 -0.32 2.86 16 32 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.11 1.27 8.06 -52.49 -0.42 0.84 16 40 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 335.17 15.07 5.05 5.05 Total: -1.00 -29.52 335.17 -7.76 -37.29 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -5.63 Total: 6.87 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: -1.83 Total: -22.68 kcal Atomic # 7 Polarization: -19.79 SS G_CDS: 0.61 Total: -19.18 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.93 Total: -21.10 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.52 -7.76 -37.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225842890.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.377 kcal (2) G-P(sol) polarization free energy of solvation -29.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds