Wall clock time and date at job start Tue Mar 31 2020 06:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.36006 * 116.99824 * 2 1 4 4 C 1.38705 * 120.02719 * 0.02562 * 3 2 1 5 5 C 1.38769 * 120.53676 * 179.71985 * 4 3 2 6 6 C 1.36482 * 120.58502 * 0.25864 * 5 4 3 7 7 C 1.40769 * 120.02091 * 0.02562 * 6 5 4 8 8 C 1.41181 * 120.26290 * 179.97438 * 7 6 5 9 9 H 1.08005 * 119.99649 * 204.76126 * 8 7 6 10 10 C 1.39921 * 120.00449 * 24.75333 * 8 7 6 11 11 N 1.30870 * 119.99666 * 17.71095 * 10 8 7 12 12 Si 1.86796 * 120.00412 * 197.70470 * 10 8 7 13 13 H 1.48503 * 109.47219 * 0.02562 * 12 10 8 14 14 H 1.48494 * 109.47173 * 120.00157 * 12 10 8 15 15 H 1.48501 * 109.47207 * 240.00628 * 12 10 8 16 16 C 1.38888 * 120.02031 * 180.27558 * 3 2 1 17 17 O 1.35746 * 120.28068 * 359.97438 * 16 3 2 18 18 C 1.42895 * 116.99799 * 270.31513 * 17 16 3 19 19 C 1.53008 * 109.47056 * 180.02562 * 18 17 16 20 20 H 1.09004 * 109.70086 * 304.41874 * 19 18 17 21 21 C 1.53500 * 109.70769 * 183.79150 * 19 18 17 22 22 C 1.53269 * 108.14628 * 177.89605 * 21 19 18 23 23 C 1.50448 * 109.43503 * 46.83985 * 22 21 19 24 24 C 1.30679 * 122.49659 * 342.51751 * 23 22 21 25 25 O 1.35138 * 123.34305 * 0.41217 * 24 23 22 26 26 H 1.09002 * 109.47149 * 59.99653 * 1 2 3 27 27 H 1.08993 * 109.46961 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46872 * 299.99797 * 1 2 3 29 29 H 1.08006 * 119.72547 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.70539 * 180.27801 * 5 4 3 31 31 H 1.07996 * 119.99233 * 180.02562 * 6 5 4 32 32 H 0.97001 * 119.99883 * 180.02562 * 11 10 8 33 33 H 1.08999 * 109.47397 * 300.00052 * 18 17 16 34 34 H 1.08997 * 109.47090 * 60.00245 * 18 17 16 35 35 H 1.08998 * 109.72478 * 297.57942 * 21 19 18 36 36 H 1.09002 * 109.72385 * 58.24541 * 21 19 18 37 37 H 1.08991 * 109.47400 * 286.84783 * 22 21 19 38 38 H 1.08996 * 109.48458 * 166.82764 * 22 21 19 39 39 H 1.07998 * 118.75109 * 162.54274 * 23 22 21 40 40 H 1.08000 * 118.33102 * 180.43727 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2916 2.3755 0.0005 5 6 1.9105 3.6175 0.0064 6 6 3.2718 3.7150 0.0064 7 6 4.0614 2.5496 -0.0001 8 6 5.4700 2.6445 -0.0007 9 1 6.0656 1.8353 -0.3970 10 6 6.0945 3.7868 0.5120 11 7 5.4308 4.6005 1.2931 12 14 7.8756 4.1503 0.0819 13 1 8.3966 3.0844 -0.8112 14 1 7.9598 5.4610 -0.6110 15 1 8.6860 4.1947 1.3254 16 6 3.4334 1.2851 -0.0058 17 8 4.1787 0.1505 -0.0109 18 6 4.5345 -0.3977 1.2598 19 6 5.3679 -1.6642 1.0536 20 1 4.8193 -2.3671 0.4267 21 6 5.6731 -2.3099 2.4123 22 6 6.4617 -3.6000 2.1614 23 6 7.5663 -3.3280 1.1768 24 6 7.5767 -2.2717 0.4075 25 8 6.6097 -1.3279 0.4285 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 0.2132 2.3142 0.0005 30 1 1.3096 4.5148 0.0113 31 1 3.7435 4.6865 0.0114 32 1 5.8636 5.3927 1.6482 33 1 5.1173 0.3331 1.8205 34 1 3.6297 -0.6442 1.8153 35 1 6.2678 -1.6269 3.0190 36 1 4.7407 -2.5429 2.9266 37 1 5.7942 -4.3611 1.7577 38 1 6.8899 -3.9527 3.0996 39 1 8.3813 -4.0327 1.1028 40 1 8.3998 -2.1468 -0.2804 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225842890.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:25 Heat of formation + Delta-G solvation = -99.856788 kcal Electronic energy + Delta-G solvation = -23471.565975 eV Core-core repulsion = 20023.672715 eV Total energy + Delta-G solvation = -3447.893259 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.16090 -40.67849 -38.71917 -37.53396 -35.34684 -34.86690 -33.30566 -31.33293 -30.32335 -28.39717 -28.00733 -26.82829 -24.85687 -23.62615 -22.67954 -22.42332 -19.91505 -19.65520 -18.28950 -17.79819 -17.60530 -17.38038 -16.90148 -16.57903 -16.44975 -16.15451 -15.38798 -15.09187 -14.93783 -14.82057 -14.61806 -14.21702 -13.81003 -13.74278 -13.52084 -13.24301 -13.07515 -12.89966 -12.65068 -12.42883 -12.22090 -12.00187 -11.83788 -11.74097 -11.67339 -11.47283 -11.26887 -11.03031 -10.43464 -9.36396 -9.29276 -8.80169 -8.63541 -6.39672 0.78333 1.02603 1.35290 1.42103 1.47082 1.51273 2.18712 2.52953 2.60079 2.69268 2.98351 3.65197 3.72863 3.95006 4.01748 4.21366 4.30447 4.32684 4.44074 4.46703 4.47861 4.52993 4.62351 4.70615 4.75962 4.79290 4.85466 4.95455 5.00275 5.04991 5.16569 5.24198 5.31174 5.39419 5.68630 5.73187 5.90036 6.00884 6.10621 6.48203 6.63302 6.76095 6.78637 6.88801 7.32409 8.23272 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.010332 B = 0.007436 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.281832 B = 3764.634693 C = 6118.861867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.338 6.338 3 C 0.130 3.870 4 C -0.315 4.315 5 C -0.075 4.075 6 C -0.205 4.205 7 C 0.097 3.903 8 C -0.464 4.464 9 H 0.069 0.931 10 C 0.040 3.960 11 N -0.810 5.810 12 Si 0.977 3.023 13 H -0.264 1.264 14 H -0.256 1.256 15 H -0.262 1.262 16 C -0.091 4.091 17 O -0.322 6.322 18 C 0.075 3.925 19 C 0.100 3.900 20 H 0.074 0.926 21 C -0.148 4.148 22 C -0.077 4.077 23 C -0.283 4.283 24 C 0.029 3.971 25 O -0.341 6.341 26 H 0.055 0.945 27 H 0.118 0.882 28 H 0.056 0.944 29 H 0.132 0.868 30 H 0.122 0.878 31 H 0.110 0.890 32 H 0.292 0.708 33 H 0.029 0.971 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.143 0.857 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.611 -10.397 2.470 10.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.253 6.253 3 C 0.085 3.915 4 C -0.335 4.335 5 C -0.093 4.093 6 C -0.224 4.224 7 C 0.094 3.906 8 C -0.492 4.492 9 H 0.088 0.912 10 C -0.176 4.176 11 N -0.434 5.434 12 Si 0.797 3.203 13 H -0.188 1.188 14 H -0.180 1.180 15 H -0.187 1.187 16 C -0.136 4.136 17 O -0.238 6.238 18 C 0.000 4.000 19 C 0.044 3.956 20 H 0.092 0.908 21 C -0.185 4.185 22 C -0.114 4.114 23 C -0.303 4.303 24 C -0.034 4.034 25 O -0.255 6.255 26 H 0.074 0.926 27 H 0.136 0.864 28 H 0.074 0.926 29 H 0.150 0.850 30 H 0.140 0.860 31 H 0.128 0.872 32 H 0.103 0.897 33 H 0.047 0.953 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.100 0.900 38 H 0.115 0.885 39 H 0.160 0.840 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.452 -10.278 2.397 10.564 hybrid contribution 0.373 0.563 0.163 0.695 sum -0.079 -9.715 2.560 10.047 Atomic orbital electron populations 1.23193 0.77624 1.04671 1.01585 1.86031 1.22646 1.27345 1.89256 1.19277 0.90946 0.84636 0.96658 1.20652 0.98947 0.91387 1.22488 1.20560 0.94351 0.96796 0.97639 1.20931 0.93239 0.98057 1.10192 1.17992 0.94352 0.90232 0.88010 1.19639 0.91898 1.02504 1.35148 0.91246 1.26739 1.04976 0.94112 0.91807 1.69880 1.40409 1.11552 1.21595 0.85234 0.76288 0.79316 0.79446 1.18824 1.17975 1.18661 1.18171 0.86167 0.86365 1.22927 1.85994 1.70997 1.39232 1.27616 1.22585 0.96538 0.93728 0.87196 1.22464 0.82866 0.95098 0.95123 0.90768 1.22210 1.02760 0.98450 0.95120 1.20399 0.95585 0.95988 0.99393 1.22786 1.04109 1.01433 1.01938 1.22518 0.92197 0.89893 0.98756 1.86080 1.23408 1.40580 1.75467 0.92599 0.86358 0.92555 0.84988 0.85984 0.87215 0.89664 0.95258 0.91923 0.91461 0.88276 0.89991 0.88453 0.83951 0.81478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 9.81 113.37 1.11 1.80 16 2 O -0.34 -14.19 10.28 -79.72 -0.82 -15.01 16 3 C 0.13 6.27 6.69 22.54 0.15 6.42 16 4 C -0.32 -13.91 9.05 22.51 0.20 -13.71 16 5 C -0.08 -3.48 9.96 21.99 0.22 -3.26 16 6 C -0.20 -10.93 8.64 22.48 0.19 -10.74 16 7 C 0.10 5.54 5.58 -21.21 -0.12 5.42 16 8 C -0.46 -26.41 8.72 23.40 0.20 -26.21 16 9 H 0.07 4.12 7.65 -2.91 -0.02 4.10 16 10 C 0.04 2.09 5.14 85.24 0.44 2.52 16 11 N -0.81 -42.13 10.96 21.82 0.24 -41.89 16 12 Si 0.98 39.69 29.59 68.60 2.03 41.72 16 13 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 14 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 15 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 16 C -0.09 -4.93 5.77 23.15 0.13 -4.80 16 17 O -0.32 -16.86 9.11 -70.88 -0.65 -17.51 16 18 C 0.07 3.30 5.75 71.98 0.41 3.71 16 19 C 0.10 3.64 3.14 30.76 0.10 3.73 16 20 H 0.07 2.62 8.14 -2.38 -0.02 2.60 16 21 C -0.15 -4.03 5.55 30.85 0.17 -3.86 16 22 C -0.08 -1.68 6.23 29.86 0.19 -1.50 16 23 C -0.28 -6.83 9.97 25.90 0.26 -6.57 16 24 C 0.03 0.86 10.88 68.11 0.74 1.60 16 25 O -0.34 -13.54 10.02 -80.01 -0.80 -14.35 16 26 H 0.06 1.51 7.66 -2.39 -0.02 1.49 16 27 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.06 1.50 7.66 -2.38 -0.02 1.48 16 29 H 0.13 4.81 6.27 -2.91 -0.02 4.79 16 30 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 31 H 0.11 6.00 6.16 -2.91 -0.02 5.98 16 32 H 0.29 13.55 8.30 -92.71 -0.77 12.78 16 33 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.14 2.64 8.06 -2.91 -0.02 2.61 16 40 H 0.17 4.16 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -67.85 335.17 5.44 -62.41 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: 1.03 Total: 30.08 kcal Atomic # 6 Polarization: -49.85 SS G_CDS: 4.40 Total: -45.44 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: 0.24 Total: -41.89 kcal Atomic # 8 Polarization: -44.60 SS G_CDS: -2.27 Total: -46.87 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Total: -67.85 5.44 -62.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225842890.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.448 kcal (2) G-P(sol) polarization free energy of solvation -67.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds