Wall clock time and date at job start Tue Mar 31 2020 06:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36008 * 116.99961 * 2 1 4 4 C 1.38704 * 120.02448 * 0.22989 * 3 2 1 5 5 C 1.38773 * 120.53493 * 180.27527 * 4 3 2 6 6 C 1.36486 * 120.58227 * 359.74998 * 5 4 3 7 7 C 1.40763 * 120.02430 * 359.97438 * 6 5 4 8 8 C 1.41186 * 120.26637 * 180.02562 * 7 6 5 9 9 H 1.08007 * 119.99685 * 204.97777 * 8 7 6 10 10 C 1.39916 * 119.99852 * 24.97430 * 8 7 6 11 11 N 1.30869 * 119.99983 * 17.48901 * 10 8 7 12 12 Si 1.86800 * 119.99981 * 197.49061 * 10 8 7 13 13 H 1.48500 * 109.47205 * 89.99917 * 12 10 8 14 14 H 1.48497 * 109.47465 * 210.00147 * 12 10 8 15 15 H 1.48506 * 109.47022 * 330.00243 * 12 10 8 16 16 C 1.38877 * 120.01549 * 180.02562 * 3 2 1 17 17 O 1.35742 * 120.28778 * 0.02562 * 16 3 2 18 18 C 1.42894 * 116.99953 * 269.72307 * 17 16 3 19 19 C 1.53986 * 113.57272 * 247.77009 * 18 17 16 20 20 C 1.52739 * 86.71859 * 220.79088 * 19 18 17 21 21 C 1.52991 * 121.40227 * 151.08382 * 20 19 18 22 22 O 1.44395 * 85.13038 * 103.35889 * 21 20 19 23 23 C 1.44402 * 93.58971 * 23.38858 * 22 21 20 24 24 C 1.52734 * 88.23738 * 24.78652 * 20 19 18 25 25 H 1.09009 * 109.46830 * 59.99799 * 1 2 3 26 26 H 1.09000 * 109.47308 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47350 * 300.00317 * 1 2 3 28 28 H 1.08002 * 119.73285 * 0.02562 * 4 3 2 29 29 H 1.08006 * 119.70839 * 179.72980 * 5 4 3 30 30 H 1.07999 * 119.98783 * 179.97438 * 6 5 4 31 31 H 0.97008 * 119.99700 * 179.97438 * 11 10 8 32 32 H 1.09001 * 112.87443 * 18.87725 * 18 17 16 33 33 H 1.09002 * 113.67352 * 335.24311 * 19 18 17 34 34 H 1.08996 * 113.67815 * 106.33209 * 19 18 17 35 35 H 1.08999 * 113.92486 * 217.40682 * 21 20 19 36 36 H 1.08995 * 113.92280 * 349.30754 * 21 20 19 37 37 H 1.08993 * 113.92813 * 222.55869 * 23 22 21 38 38 H 1.09004 * 114.05162 * 90.67013 * 23 22 21 39 39 H 1.09000 * 113.67568 * 220.75232 * 24 20 19 40 40 H 1.09005 * 113.66708 * 89.66638 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2915 2.3754 0.0048 5 6 1.9104 3.6175 -0.0009 6 6 3.2718 3.7149 -0.0062 7 6 4.0613 2.5496 -0.0054 8 6 5.4700 2.6444 -0.0103 9 1 6.0644 1.8335 -0.4049 10 6 6.0959 3.7888 0.4959 11 7 5.4330 4.6081 1.2719 12 14 7.8775 4.1474 0.0640 13 1 7.9317 4.9674 -1.1728 14 1 8.5173 4.8907 1.1791 15 1 8.6001 2.8690 -0.1576 16 6 3.4333 1.2849 -0.0005 17 8 4.1786 0.1504 -0.0016 18 6 4.5405 -0.3892 1.2711 19 6 6.0485 -0.3025 1.5705 20 6 5.9228 -1.7060 2.1599 21 6 7.0998 -2.6834 2.1493 22 8 7.2322 -2.3473 3.5474 23 6 5.8546 -1.9324 3.6714 24 6 4.7022 -1.9205 1.2673 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.2132 2.3143 0.0090 29 1 1.3095 4.5149 -0.0014 30 1 3.7434 4.6865 -0.0110 31 1 5.8671 5.4013 1.6231 32 1 3.9132 -0.0191 2.0821 33 1 6.6703 -0.2575 0.6764 34 1 6.3056 0.4597 2.3060 35 1 6.8126 -3.7192 1.9689 36 1 7.9392 -2.3577 1.5349 37 1 5.7185 -1.0186 4.2497 38 1 5.1751 -2.7313 3.9685 39 1 3.8861 -2.4480 1.7612 40 1 4.9436 -2.3327 0.2875 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225843143.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:16 Heat of formation + Delta-G solvation = -42.020545 kcal Electronic energy + Delta-G solvation = -23700.619324 eV Core-core repulsion = 20255.234032 eV Total energy + Delta-G solvation = -3445.385292 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.80237 -39.04398 -37.38951 -36.22469 -34.49361 -33.49134 -29.48426 -28.61261 -27.08424 -26.49793 -26.45463 -25.38309 -25.05465 -21.66032 -20.83942 -20.35551 -18.11194 -17.89898 -16.84755 -15.89669 -15.87884 -15.62024 -15.48601 -15.41840 -14.92815 -14.78433 -13.93521 -13.79855 -13.46224 -13.19362 -12.91706 -12.55210 -12.05409 -12.00500 -11.74745 -11.72166 -11.38837 -11.24430 -11.04991 -10.83672 -10.65644 -10.44652 -10.33270 -10.10378 -9.95502 -9.85319 -9.58574 -9.39199 -9.21518 -8.52165 -7.47434 -6.97343 -6.80317 -4.46175 2.60929 2.86716 3.03096 3.06804 3.15623 3.82257 3.84604 4.20304 4.31753 4.49649 4.67563 4.97892 5.10162 5.33909 5.36169 5.45677 5.58169 5.60912 5.66503 5.71392 5.85151 5.88590 5.97293 6.10125 6.15721 6.17848 6.21119 6.25852 6.37227 6.52685 6.66326 6.75603 6.80263 6.91649 7.08816 7.18786 7.59037 7.70778 7.88391 8.00171 8.36615 8.40519 8.68768 8.76608 9.18078 10.03736 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.010133 B = 0.007994 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.631267 B = 3501.796783 C = 5827.307246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.321 6.321 3 C 0.134 3.866 4 C -0.321 4.321 5 C -0.077 4.077 6 C -0.180 4.180 7 C 0.127 3.873 8 C -0.432 4.432 9 H 0.088 0.912 10 C 0.075 3.925 11 N -0.783 5.783 12 Si 0.908 3.092 13 H -0.266 1.266 14 H -0.277 1.277 15 H -0.259 1.259 16 C -0.066 4.066 17 O -0.295 6.295 18 C 0.082 3.918 19 C -0.115 4.115 20 C -0.157 4.157 21 C 0.051 3.949 22 O -0.384 6.384 23 C 0.058 3.942 24 C -0.127 4.127 25 H 0.045 0.955 26 H 0.083 0.917 27 H 0.044 0.956 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.121 0.879 31 H 0.283 0.717 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.522 -7.530 1.510 7.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.235 6.235 3 C 0.090 3.910 4 C -0.341 4.341 5 C -0.095 4.095 6 C -0.199 4.199 7 C 0.124 3.876 8 C -0.460 4.460 9 H 0.106 0.894 10 C -0.144 4.144 11 N -0.407 5.407 12 Si 0.732 3.268 13 H -0.191 1.191 14 H -0.202 1.202 15 H -0.183 1.183 16 C -0.112 4.112 17 O -0.211 6.211 18 C 0.025 3.975 19 C -0.153 4.153 20 C -0.157 4.157 21 C -0.026 4.026 22 O -0.303 6.303 23 C -0.019 4.019 24 C -0.165 4.165 25 H 0.064 0.936 26 H 0.101 0.899 27 H 0.063 0.937 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.139 0.861 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.114 -7.608 1.692 7.873 hybrid contribution 0.165 0.610 0.068 0.635 sum -0.950 -6.998 1.759 7.278 Atomic orbital electron populations 1.22785 0.80863 1.01873 1.00606 1.86067 1.19349 1.28521 1.89570 1.19190 0.91341 0.83158 0.97331 1.20286 0.97262 0.92287 1.24252 1.20221 0.95043 0.95090 0.99171 1.20942 0.92014 0.98954 1.08021 1.17629 0.93716 0.89099 0.87204 1.19545 0.91512 1.01464 1.33515 0.89429 1.25993 1.00802 0.95018 0.92579 1.69856 1.38630 1.10815 1.21410 0.86297 0.81605 0.79786 0.79133 1.19102 1.20220 1.18251 1.17883 0.84822 0.86372 1.22083 1.86082 1.70019 1.39202 1.25752 1.23595 0.93927 0.91942 0.88065 1.23117 0.98954 0.92525 1.00659 1.24109 0.96829 0.99290 0.95493 1.23763 0.97729 0.98036 0.83066 1.89671 1.27328 1.85894 1.27406 1.23694 0.83607 0.99712 0.94856 1.23096 0.96256 0.97391 0.99708 0.93607 0.89871 0.93701 0.88521 0.89099 0.86088 0.90632 0.90811 0.88850 0.90857 0.90340 0.89214 0.89071 0.90154 0.91381 0.89062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.81 101.05 0.99 1.53 16 2 O -0.32 -6.76 10.28 -34.31 -0.35 -7.12 16 3 C 0.13 3.15 6.69 -39.17 -0.26 2.89 16 4 C -0.32 -7.17 9.05 -39.21 -0.35 -7.52 16 5 C -0.08 -1.76 9.96 -40.02 -0.40 -2.16 16 6 C -0.18 -4.54 8.64 -39.26 -0.34 -4.88 16 7 C 0.13 3.31 5.58 -106.70 -0.60 2.71 16 8 C -0.43 -10.97 8.68 -37.84 -0.33 -11.29 16 9 H 0.09 2.21 7.65 -52.48 -0.40 1.81 16 10 C 0.08 1.81 5.14 -17.33 -0.09 1.72 16 11 N -0.78 -19.23 10.97 55.55 0.61 -18.62 16 12 Si 0.91 18.14 29.59 -169.99 -5.03 13.11 16 13 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 14 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 15 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 16 C -0.07 -1.65 5.66 -38.22 -0.22 -1.87 16 17 O -0.29 -6.92 9.15 -33.48 -0.31 -7.23 16 18 C 0.08 1.61 4.37 -25.72 -0.11 1.50 16 19 C -0.12 -2.09 7.66 -26.35 -0.20 -2.29 16 20 C -0.16 -2.35 1.29 -154.81 -0.20 -2.55 16 21 C 0.05 0.68 8.99 37.13 0.33 1.01 16 22 O -0.38 -6.02 12.45 -35.23 -0.44 -6.45 16 23 C 0.06 0.81 8.99 37.13 0.33 1.14 16 24 C -0.13 -2.00 7.69 -26.36 -0.20 -2.20 16 25 H 0.05 0.68 7.67 -51.92 -0.40 0.28 16 26 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.04 0.66 7.65 -51.93 -0.40 0.27 16 28 H 0.10 1.89 6.27 -52.49 -0.33 1.56 16 29 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 30 H 0.12 3.11 6.17 -52.49 -0.32 2.79 16 31 H 0.28 6.32 8.30 -40.82 -0.34 5.99 16 32 H 0.07 1.54 7.95 -51.93 -0.41 1.12 16 33 H 0.09 1.74 8.14 -51.93 -0.42 1.31 16 34 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 LS Contribution 334.97 15.07 5.05 5.05 Total: -1.00 -28.22 334.97 -7.74 -35.96 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -5.63 Total: 7.57 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: -1.64 Total: -22.28 kcal Atomic # 7 Polarization: -19.23 SS G_CDS: 0.61 Total: -18.62 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -1.10 Total: -20.80 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.22 -7.74 -35.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225843143.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.064 kcal (2) G-P(sol) polarization free energy of solvation -28.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds