Wall clock time and date at job start Tue Mar 31 2020 06:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36008 * 116.99961 * 2 1 4 4 C 1.38704 * 120.02448 * 0.22989 * 3 2 1 5 5 C 1.38773 * 120.53493 * 180.27527 * 4 3 2 6 6 C 1.36486 * 120.58227 * 359.74998 * 5 4 3 7 7 C 1.40763 * 120.02430 * 359.97438 * 6 5 4 8 8 C 1.41186 * 120.26637 * 180.02562 * 7 6 5 9 9 H 1.08007 * 119.99685 * 204.97777 * 8 7 6 10 10 C 1.39916 * 119.99852 * 24.97430 * 8 7 6 11 11 N 1.30869 * 119.99983 * 17.48901 * 10 8 7 12 12 Si 1.86800 * 119.99981 * 197.49061 * 10 8 7 13 13 H 1.48500 * 109.47205 * 89.99917 * 12 10 8 14 14 H 1.48497 * 109.47465 * 210.00147 * 12 10 8 15 15 H 1.48506 * 109.47022 * 330.00243 * 12 10 8 16 16 C 1.38877 * 120.01549 * 180.02562 * 3 2 1 17 17 O 1.35742 * 120.28778 * 0.02562 * 16 3 2 18 18 C 1.42894 * 116.99953 * 269.72307 * 17 16 3 19 19 C 1.53986 * 113.57272 * 247.77009 * 18 17 16 20 20 C 1.52739 * 86.71859 * 220.79088 * 19 18 17 21 21 C 1.52991 * 121.40227 * 151.08382 * 20 19 18 22 22 O 1.44395 * 85.13038 * 103.35889 * 21 20 19 23 23 C 1.44402 * 93.58971 * 23.38858 * 22 21 20 24 24 C 1.52734 * 88.23738 * 24.78652 * 20 19 18 25 25 H 1.09009 * 109.46830 * 59.99799 * 1 2 3 26 26 H 1.09000 * 109.47308 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47350 * 300.00317 * 1 2 3 28 28 H 1.08002 * 119.73285 * 0.02562 * 4 3 2 29 29 H 1.08006 * 119.70839 * 179.72980 * 5 4 3 30 30 H 1.07999 * 119.98783 * 179.97438 * 6 5 4 31 31 H 0.97008 * 119.99700 * 179.97438 * 11 10 8 32 32 H 1.09001 * 112.87443 * 18.87725 * 18 17 16 33 33 H 1.09002 * 113.67352 * 335.24311 * 19 18 17 34 34 H 1.08996 * 113.67815 * 106.33209 * 19 18 17 35 35 H 1.08999 * 113.92486 * 217.40682 * 21 20 19 36 36 H 1.08995 * 113.92280 * 349.30754 * 21 20 19 37 37 H 1.08993 * 113.92813 * 222.55869 * 23 22 21 38 38 H 1.09004 * 114.05162 * 90.67013 * 23 22 21 39 39 H 1.09000 * 113.67568 * 220.75232 * 24 20 19 40 40 H 1.09005 * 113.66708 * 89.66638 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2915 2.3754 0.0048 5 6 1.9104 3.6175 -0.0009 6 6 3.2718 3.7149 -0.0062 7 6 4.0613 2.5496 -0.0054 8 6 5.4700 2.6444 -0.0103 9 1 6.0644 1.8335 -0.4049 10 6 6.0959 3.7888 0.4959 11 7 5.4330 4.6081 1.2719 12 14 7.8775 4.1474 0.0640 13 1 7.9317 4.9674 -1.1728 14 1 8.5173 4.8907 1.1791 15 1 8.6001 2.8690 -0.1576 16 6 3.4333 1.2849 -0.0005 17 8 4.1786 0.1504 -0.0016 18 6 4.5405 -0.3892 1.2711 19 6 6.0485 -0.3025 1.5705 20 6 5.9228 -1.7060 2.1599 21 6 7.0998 -2.6834 2.1493 22 8 7.2322 -2.3473 3.5474 23 6 5.8546 -1.9324 3.6714 24 6 4.7022 -1.9205 1.2673 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.2132 2.3143 0.0090 29 1 1.3095 4.5149 -0.0014 30 1 3.7434 4.6865 -0.0110 31 1 5.8671 5.4013 1.6231 32 1 3.9132 -0.0191 2.0821 33 1 6.6703 -0.2575 0.6764 34 1 6.3056 0.4597 2.3060 35 1 6.8126 -3.7192 1.9689 36 1 7.9392 -2.3577 1.5349 37 1 5.7185 -1.0186 4.2497 38 1 5.1751 -2.7313 3.9685 39 1 3.8861 -2.4480 1.7612 40 1 4.9436 -2.3327 0.2875 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225843143.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:16 Heat of formation + Delta-G solvation = -57.803068 kcal Electronic energy + Delta-G solvation = -23701.303705 eV Core-core repulsion = 20255.234032 eV Total energy + Delta-G solvation = -3446.069673 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.04506 -40.72624 -38.93779 -37.88622 -36.06684 -35.30413 -31.32601 -30.26714 -28.35319 -28.01113 -27.56479 -26.83646 -26.74758 -23.24718 -22.62179 -22.02128 -19.65674 -19.34783 -18.49190 -17.62099 -17.25567 -16.99297 -16.84745 -16.77921 -16.47094 -16.36573 -15.50723 -15.28402 -15.06439 -14.77004 -14.47573 -13.88878 -13.68104 -13.52114 -13.30281 -13.11600 -12.94252 -12.81932 -12.53368 -12.40282 -12.25552 -12.00407 -11.87972 -11.65874 -11.47950 -11.30678 -11.10307 -11.01756 -10.61258 -10.17434 -9.33682 -8.77604 -8.60375 -6.36707 0.81235 1.05019 1.36468 1.48331 1.49743 2.16943 2.63101 2.70053 2.71765 3.01079 3.39739 3.44394 3.72844 3.79834 4.01411 4.17477 4.33102 4.37061 4.40913 4.47093 4.52391 4.58419 4.64576 4.76780 4.80752 4.84467 4.86680 5.00098 5.02500 5.05075 5.10749 5.13405 5.18259 5.27056 5.34065 5.41939 5.75335 5.91121 6.04107 6.12092 6.50269 6.67837 6.81886 6.90395 7.38710 8.25348 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.010133 B = 0.007994 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.631267 B = 3501.796783 C = 5827.307246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.336 6.336 3 C 0.127 3.873 4 C -0.317 4.317 5 C -0.078 4.078 6 C -0.206 4.206 7 C 0.098 3.902 8 C -0.456 4.456 9 H 0.076 0.924 10 C 0.041 3.959 11 N -0.810 5.810 12 Si 0.972 3.028 13 H -0.260 1.260 14 H -0.266 1.266 15 H -0.260 1.260 16 C -0.085 4.085 17 O -0.312 6.312 18 C 0.067 3.933 19 C -0.117 4.117 20 C -0.149 4.149 21 C 0.058 3.942 22 O -0.407 6.407 23 C 0.060 3.940 24 C -0.108 4.108 25 H 0.054 0.946 26 H 0.118 0.882 27 H 0.053 0.947 28 H 0.129 0.871 29 H 0.118 0.882 30 H 0.108 0.892 31 H 0.291 0.709 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.051 0.949 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.088 0.912 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.141 -9.148 1.726 9.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.250 6.250 3 C 0.082 3.918 4 C -0.337 4.337 5 C -0.096 4.096 6 C -0.225 4.225 7 C 0.094 3.906 8 C -0.485 4.485 9 H 0.094 0.906 10 C -0.176 4.176 11 N -0.435 5.435 12 Si 0.793 3.207 13 H -0.184 1.184 14 H -0.191 1.191 15 H -0.183 1.183 16 C -0.131 4.131 17 O -0.229 6.229 18 C 0.010 3.990 19 C -0.155 4.155 20 C -0.150 4.150 21 C -0.018 4.018 22 O -0.326 6.326 23 C -0.016 4.016 24 C -0.145 4.145 25 H 0.073 0.927 26 H 0.136 0.864 27 H 0.072 0.928 28 H 0.147 0.853 29 H 0.136 0.864 30 H 0.126 0.874 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.128 0.872 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.129 0.871 39 H 0.107 0.893 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.759 -9.234 1.911 9.592 hybrid contribution 0.197 1.048 0.011 1.067 sum -1.562 -8.186 1.922 8.552 Atomic orbital electron populations 1.23170 0.77819 1.04603 1.01419 1.86035 1.22429 1.27290 1.89239 1.19291 0.91186 0.84513 0.96776 1.20636 0.98855 0.91532 1.22674 1.20538 0.94480 0.96675 0.97953 1.20933 0.93165 0.98228 1.10205 1.17988 0.94459 0.90066 0.88051 1.19571 0.91613 1.02239 1.35050 0.90628 1.26700 1.04632 0.94327 0.91918 1.69888 1.40376 1.11345 1.21924 0.85336 0.76654 0.79507 0.79206 1.18431 1.19086 1.18342 1.18150 0.86070 0.86563 1.22287 1.85994 1.70252 1.38768 1.27855 1.23825 0.94219 0.94761 0.86166 1.23022 0.97851 0.94596 1.00041 1.24018 0.97372 0.97213 0.96365 1.23952 0.96782 0.99062 0.82035 1.89658 1.28247 1.86200 1.28526 1.23867 0.83518 1.00607 0.93581 1.22999 0.97145 0.93998 1.00369 0.92710 0.86360 0.92799 0.85332 0.86379 0.87390 0.89866 0.92725 0.89865 0.93033 0.87188 0.88813 0.89668 0.87070 0.89306 0.88577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.69 9.81 113.37 1.11 1.80 16 2 O -0.34 -13.72 10.28 -79.73 -0.82 -14.53 16 3 C 0.13 5.98 6.69 22.53 0.15 6.13 16 4 C -0.32 -13.83 9.05 22.51 0.20 -13.63 16 5 C -0.08 -3.58 9.96 21.99 0.22 -3.36 16 6 C -0.21 -10.74 8.64 22.48 0.19 -10.55 16 7 C 0.10 5.31 5.58 -21.21 -0.12 5.20 16 8 C -0.46 -24.35 8.68 23.40 0.20 -24.15 16 9 H 0.08 4.06 7.65 -2.91 -0.02 4.04 16 10 C 0.04 2.03 5.14 85.24 0.44 2.47 16 11 N -0.81 -41.16 10.97 21.82 0.24 -40.92 16 12 Si 0.97 38.06 29.59 68.60 2.03 40.09 16 13 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 14 H -0.27 -9.88 7.11 99.48 0.71 -9.18 16 15 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 16 C -0.09 -4.41 5.66 23.15 0.13 -4.28 16 17 O -0.31 -15.15 9.15 -76.76 -0.70 -15.85 16 18 C 0.07 2.70 4.37 31.25 0.14 2.84 16 19 C -0.12 -4.41 7.66 30.84 0.24 -4.17 16 20 C -0.15 -4.30 1.29 -52.37 -0.07 -4.37 16 21 C 0.06 1.41 8.99 71.97 0.65 2.06 16 22 O -0.41 -11.97 12.45 -148.98 -1.86 -13.83 16 23 C 0.06 1.57 8.99 71.97 0.65 2.22 16 24 C -0.11 -3.24 7.69 30.84 0.24 -3.00 16 25 H 0.05 1.46 7.67 -2.38 -0.02 1.44 16 26 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.05 1.43 7.65 -2.39 -0.02 1.41 16 28 H 0.13 4.68 6.27 -2.91 -0.02 4.66 16 29 H 0.12 4.65 8.06 -2.91 -0.02 4.62 16 30 H 0.11 5.80 6.17 -2.91 -0.02 5.78 16 31 H 0.29 13.31 8.30 -92.70 -0.77 12.54 16 32 H 0.05 2.37 7.95 -2.39 -0.02 2.35 16 33 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 34 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.11 2.23 8.14 -2.38 -0.02 2.21 16 39 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.10 2.81 8.14 -2.38 -0.02 2.79 16 Total: -1.00 -63.44 334.97 4.30 -59.13 By element: Atomic # 1 Polarization: 29.68 SS G_CDS: 1.04 Total: 30.72 kcal Atomic # 6 Polarization: -49.17 SS G_CDS: 4.37 Total: -44.80 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.24 Total: -40.92 kcal Atomic # 8 Polarization: -40.84 SS G_CDS: -3.38 Total: -44.22 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 2.03 Total: 40.09 kcal Total: -63.44 4.30 -59.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225843143.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.332 kcal (2) G-P(sol) polarization free energy of solvation -63.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds