Wall clock time and date at job start Tue Mar 31 2020 06:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 120.00206 * 2 1 4 4 H 1.48504 * 109.47268 * 269.99831 * 3 2 1 5 5 H 1.48500 * 109.47169 * 30.00329 * 3 2 1 6 6 H 1.48506 * 109.46769 * 150.00426 * 3 2 1 7 7 C 1.38818 * 119.99641 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99997 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99771 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.65089 * 359.95833 * 9 7 2 11 11 C 1.54912 * 104.83174 * 204.16536 * 10 9 7 12 12 C 1.55161 * 101.57858 * 322.98971 * 11 10 9 13 13 H 1.09008 * 110.87045 * 277.06592 * 12 11 10 14 14 O 1.42899 * 110.72037 * 153.86975 * 12 11 10 15 15 C 1.35741 * 117.00672 * 155.02342 * 14 12 11 16 16 C 1.38976 * 120.73196 * 359.97329 * 15 14 12 17 17 C 1.38632 * 118.86542 * 180.02562 * 16 15 14 18 18 O 1.35681 * 119.64046 * 180.02562 * 17 16 15 19 19 N 1.32196 * 120.72559 * 0.02562 * 17 16 15 20 20 C 1.32465 * 122.11901 * 359.97438 * 19 17 16 21 21 C 1.37859 * 120.35914 * 0.02562 * 20 19 17 22 22 C 1.51557 * 110.08820 * 180.21876 * 21 20 19 23 23 C 1.54372 * 104.94961 * 16.85494 * 22 21 20 24 24 C 1.51502 * 130.01742 * 180.02562 * 20 19 17 25 25 C 1.47025 * 125.64400 * 179.97438 * 9 7 2 26 26 H 0.96997 * 119.99504 * 359.97438 * 1 2 3 27 27 H 1.08996 * 110.36425 * 322.99960 * 10 9 7 28 28 H 1.09003 * 110.36538 * 85.21586 * 10 9 7 29 29 H 1.09001 * 111.00282 * 204.91777 * 11 10 9 30 30 H 1.08995 * 111.00404 * 81.05975 * 11 10 9 31 31 H 1.08001 * 120.56444 * 359.97438 * 16 15 14 32 32 H 0.96700 * 114.00345 * 90.00044 * 18 17 16 33 33 H 1.08996 * 110.26463 * 258.06131 * 22 21 20 34 34 H 1.08998 * 110.51073 * 135.77586 * 22 21 20 35 35 H 1.09002 * 110.83099 * 215.67050 * 23 22 21 36 36 H 1.09000 * 110.83012 * 92.29662 * 23 22 21 37 37 H 1.08996 * 110.29896 * 43.84179 * 24 20 19 38 38 H 1.09005 * 110.37642 * 281.74904 * 24 20 19 39 39 H 1.08996 * 109.88253 * 59.49019 * 25 9 7 40 40 H 1.09002 * 109.88091 * 298.32025 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4399 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1417 -2.5331 0.0009 11 6 -0.4013 -3.9321 0.6133 12 6 0.7782 -4.7524 0.0273 13 1 0.5467 -5.1006 -0.9794 14 8 1.1009 -5.8534 0.8792 15 6 1.7065 -6.9224 0.3022 16 6 1.9917 -6.9284 -1.0580 17 6 2.6105 -8.0408 -1.6071 18 8 2.8967 -8.0633 -2.9333 19 7 2.9250 -9.0800 -0.8529 20 6 2.6690 -9.1103 0.4464 21 6 2.0554 -8.0396 1.0609 22 6 1.8808 -8.3185 2.5403 23 6 2.8381 -9.4918 2.8401 24 6 2.9478 -10.1926 1.4692 25 6 1.9316 -3.7275 -0.0016 26 1 -0.4849 0.8401 0.0004 27 1 -0.5988 -1.7587 0.6168 28 1 -0.5286 -2.4850 -1.0170 29 1 -1.3590 -4.3326 0.2808 30 1 -0.3505 -3.8977 1.7016 31 1 1.7348 -6.0814 -1.6768 32 1 3.7700 -7.7112 -3.1533 33 1 0.8511 -8.6068 2.7512 34 1 2.1580 -7.4440 3.1291 35 1 2.4086 -10.1620 3.5846 36 1 3.8110 -9.1246 3.1669 37 1 3.9510 -10.5954 1.3297 38 1 2.2072 -10.9886 1.3910 39 1 2.5592 -3.8511 0.8809 40 1 2.5268 -3.8643 -0.9045 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226591374.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:37 Heat of formation + Delta-G solvation = -13.131638 kcal Electronic energy + Delta-G solvation = -23044.883447 eV Core-core repulsion = 19633.043623 eV Total energy + Delta-G solvation = -3411.839824 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.11718 -39.03576 -37.99018 -36.46850 -35.09209 -32.53267 -31.40909 -29.40722 -28.93225 -27.76865 -27.34795 -24.73009 -23.15487 -22.32172 -21.06091 -20.34416 -20.13265 -18.76564 -17.50658 -17.16056 -16.76707 -16.15023 -15.32626 -15.04758 -14.84232 -14.71781 -14.04418 -13.99654 -13.46019 -13.36748 -13.08987 -12.68015 -12.58316 -12.25140 -11.95934 -11.79605 -11.72672 -11.40942 -11.36080 -11.08274 -11.07000 -10.85300 -10.57531 -10.47006 -10.15825 -9.92549 -9.69500 -9.42670 -8.86963 -8.75087 -8.49597 -6.96915 -5.75447 -3.18189 0.92036 1.30407 3.15537 3.31533 3.35399 3.40524 3.42598 3.65108 4.24711 4.36711 4.41037 4.72473 4.82239 4.83336 5.05228 5.10534 5.23546 5.33882 5.39063 5.43561 5.51691 5.56369 5.59790 5.65155 5.67143 5.79022 5.88290 5.99546 6.05502 6.15121 6.28424 6.37229 6.40560 6.46795 6.55949 7.33820 7.36828 7.48889 7.51739 7.72701 7.92494 8.23418 9.10770 9.70945 10.33497 11.28984 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023265 B = 0.003724 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.234999 B = 7516.022394 C = 7953.481769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.918 3.082 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.079 0.921 9 N -0.600 5.600 10 C 0.152 3.848 11 C -0.135 4.135 12 C 0.063 3.937 13 H 0.081 0.919 14 O -0.291 6.291 15 C 0.208 3.792 16 C -0.278 4.278 17 C 0.349 3.651 18 O -0.481 6.481 19 N -0.529 5.529 20 C 0.170 3.830 21 C -0.198 4.198 22 C -0.066 4.066 23 C -0.119 4.119 24 C -0.067 4.067 25 C 0.121 3.879 26 H 0.254 0.746 27 H 0.115 0.885 28 H 0.018 0.982 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.151 0.849 32 H 0.401 0.599 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.035 0.965 40 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.610 -17.864 2.884 18.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.748 3.252 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.354 4.354 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.028 3.972 11 C -0.174 4.174 12 C 0.007 3.993 13 H 0.099 0.901 14 O -0.201 6.201 15 C 0.154 3.846 16 C -0.300 4.300 17 C 0.171 3.829 18 O -0.288 6.288 19 N -0.252 5.252 20 C 0.034 3.966 21 C -0.201 4.201 22 C -0.103 4.103 23 C -0.157 4.157 24 C -0.105 4.105 25 C -0.005 4.005 26 H 0.065 0.935 27 H 0.133 0.867 28 H 0.036 0.964 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.169 0.831 32 H 0.259 0.741 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.053 0.947 40 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 3.338 -18.464 2.598 18.942 hybrid contribution 0.535 1.866 -0.266 1.960 sum 3.873 -16.597 2.332 17.202 Atomic orbital electron populations 1.69750 1.04947 1.25053 1.57315 1.24804 0.95768 0.97811 1.02033 0.86028 0.78549 0.83012 0.77637 1.21510 1.21508 1.20608 1.19081 0.90580 0.82159 1.43614 0.90336 1.44365 1.01862 0.99361 1.87164 1.22013 0.84828 0.91758 0.98643 1.23225 0.94750 0.97703 1.01696 1.23865 0.97933 0.84005 0.93495 0.90094 1.86190 1.71527 1.24195 1.38191 1.18800 0.88953 0.86697 0.90197 1.22163 1.10873 1.01999 0.94984 1.18507 0.93135 0.87501 0.83781 1.84756 1.39942 1.86450 1.17672 1.66254 1.23897 1.28899 1.06151 1.21321 0.92379 0.94388 0.88557 1.20809 1.06607 0.94199 0.98526 1.20835 1.00195 0.98832 0.90470 1.22331 1.00322 0.97001 0.96015 1.21012 1.03343 0.95321 0.90821 1.21644 0.93621 0.86438 0.98836 0.93519 0.86742 0.96422 0.91381 0.90637 0.83108 0.74101 0.90140 0.90151 0.89910 0.90561 0.89578 0.89100 0.94664 0.95588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.30 10.09 55.49 0.56 -25.74 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 3 Si 0.92 21.71 29.55 -169.99 -5.02 16.69 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.23 -6.24 10.27 -15.06 -0.15 -6.40 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.25 3.39 -170.07 -0.58 -15.82 16 10 C 0.15 3.61 5.89 -2.53 -0.01 3.59 16 11 C -0.14 -2.55 6.81 -24.58 -0.17 -2.72 16 12 C 0.06 1.14 2.85 -24.90 -0.07 1.06 16 13 H 0.08 1.36 5.95 -51.92 -0.31 1.05 16 14 O -0.29 -4.98 9.85 -18.93 -0.19 -5.17 16 15 C 0.21 3.27 6.73 -38.84 -0.26 3.00 16 16 C -0.28 -4.21 9.02 -39.16 -0.35 -4.56 16 17 C 0.35 5.15 7.74 -17.25 -0.13 5.02 16 18 O -0.48 -6.13 13.56 -18.75 -0.25 -6.39 16 19 N -0.53 -7.94 10.38 -9.32 -0.10 -8.04 16 20 C 0.17 2.26 7.31 -82.06 -0.60 1.66 16 21 C -0.20 -2.75 6.14 -103.88 -0.64 -3.39 16 22 C -0.07 -0.70 6.77 -26.74 -0.18 -0.88 16 23 C -0.12 -0.94 7.07 -25.30 -0.18 -1.12 16 24 C -0.07 -0.61 6.77 -26.78 -0.18 -0.79 16 25 C 0.12 2.56 7.02 -3.06 -0.02 2.53 16 26 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.12 3.03 5.87 -51.93 -0.31 2.73 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 31 H 0.15 2.23 6.00 -52.49 -0.31 1.91 16 32 H 0.40 3.09 9.06 45.56 0.41 3.50 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.04 0.77 8.06 -51.93 -0.42 0.35 16 40 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 326.53 15.07 4.92 4.92 Total: -1.00 -32.05 326.53 -8.42 -40.46 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -4.71 Total: 2.40 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -3.05 Total: -3.32 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: -0.11 Total: -49.60 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -0.44 Total: -11.55 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.05 -8.42 -40.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226591374.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.332 kcal (2) G-P(sol) polarization free energy of solvation -32.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds