Wall clock time and date at job start Tue Mar 31 2020 06:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47102 * 299.99508 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99856 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.47421 * 125.64870 * 359.69551 * 9 7 2 11 11 C 1.55129 * 104.72458 * 155.81551 * 10 9 7 12 12 C 1.55159 * 101.48377 * 37.29063 * 11 10 9 13 13 H 1.08999 * 110.71607 * 82.70057 * 12 11 10 14 14 O 1.42901 * 110.87280 * 205.90132 * 12 11 10 15 15 C 1.35741 * 116.99936 * 205.06656 * 14 12 11 16 16 C 1.38970 * 120.73577 * 359.72333 * 15 14 12 17 17 C 1.38647 * 118.86127 * 179.63108 * 16 15 14 18 18 O 1.35688 * 119.63323 * 180.30590 * 17 16 15 19 19 N 1.32183 * 120.72440 * 0.69485 * 17 16 15 20 20 C 1.32467 * 122.12478 * 359.61451 * 19 17 16 21 21 C 1.37868 * 120.35696 * 0.02562 * 20 19 17 22 22 C 1.51233 * 110.00188 * 179.97438 * 21 20 19 23 23 C 1.54373 * 105.10689 * 342.88300 * 22 21 20 24 24 C 1.51500 * 130.01598 * 180.02562 * 20 19 17 25 25 C 1.47018 * 125.64695 * 179.97438 * 9 7 2 26 26 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 27 27 H 1.08996 * 110.36244 * 274.74425 * 10 9 7 28 28 H 1.08997 * 110.36930 * 37.06508 * 10 9 7 29 29 H 1.09004 * 111.19138 * 279.18827 * 11 10 9 30 30 H 1.08993 * 110.94122 * 155.28725 * 11 10 9 31 31 H 1.07998 * 120.56967 * 359.97105 * 16 15 14 32 32 H 0.96696 * 113.99910 * 270.38051 * 18 17 16 33 33 H 1.08998 * 110.31288 * 101.78750 * 22 21 20 34 34 H 1.08998 * 110.31796 * 223.97211 * 22 21 20 35 35 H 1.09004 * 110.82876 * 268.04578 * 23 22 21 36 36 H 1.09004 * 111.00484 * 144.55239 * 23 22 21 37 37 H 1.09000 * 110.29349 * 316.10697 * 24 20 19 38 38 H 1.08995 * 110.29934 * 78.14671 * 24 20 19 39 39 H 1.09010 * 109.88204 * 300.44306 * 25 9 7 40 40 H 1.08994 * 109.88560 * 61.60505 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1415 -2.5332 0.0064 11 6 -0.4018 -3.9325 -0.6106 12 6 0.7784 -4.7524 -0.0256 13 1 0.5460 -5.0977 0.9818 14 8 1.1019 -5.8557 -0.8742 15 6 1.7070 -6.9231 -0.2935 16 6 1.9964 -6.9228 1.0657 17 6 2.6081 -8.0368 1.6199 18 8 2.8922 -8.0558 2.9466 19 7 2.9244 -9.0774 0.8687 20 6 2.6701 -9.1113 -0.4309 21 6 2.0571 -8.0422 -1.0490 22 6 1.8815 -8.3283 -2.5236 23 6 2.8410 -9.5000 -2.8231 24 6 2.9503 -10.1963 -1.4504 25 6 1.9317 -3.7275 0.0005 26 1 -0.4850 0.8401 -0.0004 27 1 -0.5230 -2.4889 1.0264 28 1 -0.6019 -1.7576 -0.6057 29 1 -0.3524 -3.8986 -1.6990 30 1 -1.3591 -4.3332 -0.2774 31 1 1.7442 -6.0717 1.6808 32 1 3.7649 -7.7026 3.1670 33 1 0.8521 -8.6194 -2.7326 34 1 2.1557 -7.4542 -3.1141 35 1 3.8137 -9.1309 -3.1486 36 1 2.4152 -10.1734 -3.5670 37 1 3.9537 -10.5979 -1.3090 38 1 2.2102 -10.9922 -1.3687 39 1 2.5578 -3.8510 -0.8833 40 1 2.5286 -3.8642 0.9022 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226591375.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:40 Heat of formation + Delta-G solvation = -13.111097 kcal Electronic energy + Delta-G solvation = -23045.654584 eV Core-core repulsion = 19633.815651 eV Total energy + Delta-G solvation = -3411.838933 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.12469 -39.03604 -37.99856 -36.46808 -35.09806 -32.53469 -31.41290 -29.40560 -28.93528 -27.76520 -27.34377 -24.73432 -23.15909 -22.32097 -21.06239 -20.35031 -20.13152 -18.76680 -17.50795 -17.16380 -16.77140 -16.15341 -15.32519 -15.05224 -14.84051 -14.72216 -14.04003 -14.00055 -13.45742 -13.36488 -13.09009 -12.68403 -12.58849 -12.25136 -11.96121 -11.80106 -11.72670 -11.41606 -11.35454 -11.08518 -11.07153 -10.86648 -10.57714 -10.46679 -10.13456 -9.92565 -9.69686 -9.42593 -8.87063 -8.75998 -8.49550 -6.97026 -5.75632 -3.18596 0.91801 1.30290 3.15302 3.31362 3.34973 3.40639 3.43087 3.65185 4.24650 4.36630 4.40756 4.72547 4.82386 4.83532 5.05185 5.10621 5.23366 5.33805 5.39032 5.43406 5.51669 5.56332 5.59683 5.65032 5.66987 5.79362 5.88349 5.99469 6.05550 6.15230 6.27856 6.37184 6.40284 6.46666 6.55827 7.33513 7.36679 7.48834 7.52025 7.72503 7.92455 8.23343 9.10540 9.70733 10.33155 11.28648 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023282 B = 0.003724 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.365690 B = 7517.173768 C = 7954.022513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.917 3.083 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.226 4.226 8 H 0.079 0.921 9 N -0.600 5.600 10 C 0.152 3.848 11 C -0.135 4.135 12 C 0.063 3.937 13 H 0.081 0.919 14 O -0.291 6.291 15 C 0.208 3.792 16 C -0.278 4.278 17 C 0.349 3.651 18 O -0.481 6.481 19 N -0.529 5.529 20 C 0.170 3.830 21 C -0.198 4.198 22 C -0.066 4.066 23 C -0.118 4.118 24 C -0.067 4.067 25 C 0.121 3.879 26 H 0.254 0.746 27 H 0.018 0.982 28 H 0.116 0.884 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.151 0.849 32 H 0.401 0.599 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.036 0.964 40 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.630 -17.888 -2.831 18.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.748 3.252 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.353 4.353 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.027 3.973 11 C -0.174 4.174 12 C 0.007 3.993 13 H 0.099 0.901 14 O -0.201 6.201 15 C 0.154 3.846 16 C -0.300 4.300 17 C 0.171 3.829 18 O -0.288 6.288 19 N -0.252 5.252 20 C 0.033 3.967 21 C -0.201 4.201 22 C -0.104 4.104 23 C -0.156 4.156 24 C -0.105 4.105 25 C -0.005 4.005 26 H 0.064 0.936 27 H 0.036 0.964 28 H 0.133 0.867 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.169 0.831 32 H 0.259 0.741 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.054 0.946 40 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 3.366 -18.490 -2.536 18.964 hybrid contribution 0.523 1.868 0.258 1.957 sum 3.889 -16.622 -2.278 17.222 Atomic orbital electron populations 1.69752 1.04948 1.24933 1.57417 1.24802 0.95767 0.97819 1.02058 0.85958 0.78658 0.83287 0.77337 1.20465 1.21581 1.21627 1.19130 0.90614 0.82143 1.43462 0.90277 1.44378 1.01884 0.99372 1.87134 1.22070 0.84848 0.91796 0.98560 1.23266 0.94719 0.97716 1.01690 1.23857 0.97944 0.83953 0.93559 0.90115 1.86187 1.71548 1.24191 1.38178 1.18796 0.88943 0.86716 0.90184 1.22172 1.10933 1.01924 0.94984 1.18511 0.93146 0.87495 0.83768 1.84759 1.39999 1.86432 1.17634 1.66245 1.23776 1.28912 1.06262 1.21336 0.92406 0.94392 0.88537 1.20740 1.06618 0.94201 0.98549 1.20773 1.00195 0.98828 0.90577 1.22324 1.00306 0.97010 0.95991 1.21008 1.03340 0.95296 0.90871 1.21642 0.93616 0.86433 0.98841 0.93566 0.96427 0.86655 0.90630 0.91409 0.83107 0.74108 0.90131 0.90176 0.90564 0.89873 0.89583 0.89100 0.94640 0.95611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.27 10.08 55.49 0.56 -25.71 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 3 Si 0.92 21.71 29.55 -169.99 -5.02 16.68 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.23 -6.22 10.27 -15.06 -0.15 -6.37 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -15.24 3.39 -169.94 -0.58 -15.82 16 10 C 0.15 3.60 5.91 -2.41 -0.01 3.58 16 11 C -0.14 -2.56 6.83 -24.46 -0.17 -2.72 16 12 C 0.06 1.13 2.84 -24.90 -0.07 1.06 16 13 H 0.08 1.36 5.97 -51.93 -0.31 1.05 16 14 O -0.29 -4.98 9.86 -18.93 -0.19 -5.17 16 15 C 0.21 3.27 6.73 -38.84 -0.26 3.01 16 16 C -0.28 -4.21 9.01 -39.16 -0.35 -4.56 16 17 C 0.35 5.15 7.74 -17.25 -0.13 5.02 16 18 O -0.48 -6.13 13.56 -18.77 -0.25 -6.39 16 19 N -0.53 -7.94 10.37 -9.32 -0.10 -8.04 16 20 C 0.17 2.26 7.31 -82.06 -0.60 1.66 16 21 C -0.20 -2.74 6.13 -104.03 -0.64 -3.38 16 22 C -0.07 -0.71 6.74 -26.90 -0.18 -0.89 16 23 C -0.12 -0.93 7.08 -25.32 -0.18 -1.11 16 24 C -0.07 -0.61 6.77 -26.80 -0.18 -0.80 16 25 C 0.12 2.56 7.01 -3.07 -0.02 2.53 16 26 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.12 3.06 5.86 -51.93 -0.30 2.75 16 29 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.15 2.23 6.01 -52.49 -0.32 1.92 16 32 H 0.40 3.09 9.06 45.56 0.41 3.50 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.04 0.77 8.06 -51.92 -0.42 0.35 16 40 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 326.52 15.07 4.92 4.92 Total: -1.00 -32.03 326.52 -8.42 -40.45 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -4.71 Total: 2.38 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -3.05 Total: -3.31 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: -0.11 Total: -49.57 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -0.44 Total: -11.56 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.03 -8.42 -40.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226591375.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.341 kcal (2) G-P(sol) polarization free energy of solvation -32.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds