Wall clock time and date at job start Tue Mar 31 2020 06:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47102 * 299.99508 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99856 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.47421 * 125.64870 * 359.69551 * 9 7 2 11 11 C 1.55129 * 104.72458 * 155.81551 * 10 9 7 12 12 C 1.55159 * 101.48377 * 37.29063 * 11 10 9 13 13 H 1.08999 * 110.71607 * 82.70057 * 12 11 10 14 14 O 1.42901 * 110.87280 * 205.90132 * 12 11 10 15 15 C 1.35741 * 116.99936 * 205.06656 * 14 12 11 16 16 C 1.38970 * 120.73577 * 359.72333 * 15 14 12 17 17 C 1.38647 * 118.86127 * 179.63108 * 16 15 14 18 18 O 1.35688 * 119.63323 * 180.30590 * 17 16 15 19 19 N 1.32183 * 120.72440 * 0.69485 * 17 16 15 20 20 C 1.32467 * 122.12478 * 359.61451 * 19 17 16 21 21 C 1.37868 * 120.35696 * 0.02562 * 20 19 17 22 22 C 1.51233 * 110.00188 * 179.97438 * 21 20 19 23 23 C 1.54373 * 105.10689 * 342.88300 * 22 21 20 24 24 C 1.51500 * 130.01598 * 180.02562 * 20 19 17 25 25 C 1.47018 * 125.64695 * 179.97438 * 9 7 2 26 26 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 27 27 H 1.08996 * 110.36244 * 274.74425 * 10 9 7 28 28 H 1.08997 * 110.36930 * 37.06508 * 10 9 7 29 29 H 1.09004 * 111.19138 * 279.18827 * 11 10 9 30 30 H 1.08993 * 110.94122 * 155.28725 * 11 10 9 31 31 H 1.07998 * 120.56967 * 359.97105 * 16 15 14 32 32 H 0.96696 * 113.99910 * 270.38051 * 18 17 16 33 33 H 1.08998 * 110.31288 * 101.78750 * 22 21 20 34 34 H 1.08998 * 110.31796 * 223.97211 * 22 21 20 35 35 H 1.09004 * 110.82876 * 268.04578 * 23 22 21 36 36 H 1.09004 * 111.00484 * 144.55239 * 23 22 21 37 37 H 1.09000 * 110.29349 * 316.10697 * 24 20 19 38 38 H 1.08995 * 110.29934 * 78.14671 * 24 20 19 39 39 H 1.09010 * 109.88204 * 300.44306 * 25 9 7 40 40 H 1.08994 * 109.88560 * 61.60505 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1415 -2.5332 0.0064 11 6 -0.4018 -3.9325 -0.6106 12 6 0.7784 -4.7524 -0.0256 13 1 0.5460 -5.0977 0.9818 14 8 1.1019 -5.8557 -0.8742 15 6 1.7070 -6.9231 -0.2935 16 6 1.9964 -6.9228 1.0657 17 6 2.6081 -8.0368 1.6199 18 8 2.8922 -8.0558 2.9466 19 7 2.9244 -9.0774 0.8687 20 6 2.6701 -9.1113 -0.4309 21 6 2.0571 -8.0422 -1.0490 22 6 1.8815 -8.3283 -2.5236 23 6 2.8410 -9.5000 -2.8231 24 6 2.9503 -10.1963 -1.4504 25 6 1.9317 -3.7275 0.0005 26 1 -0.4850 0.8401 -0.0004 27 1 -0.5230 -2.4889 1.0264 28 1 -0.6019 -1.7576 -0.6057 29 1 -0.3524 -3.8986 -1.6990 30 1 -1.3591 -4.3332 -0.2774 31 1 1.7442 -6.0717 1.6808 32 1 3.7649 -7.7026 3.1670 33 1 0.8521 -8.6194 -2.7326 34 1 2.1557 -7.4542 -3.1141 35 1 3.8137 -9.1309 -3.1486 36 1 2.4152 -10.1734 -3.5670 37 1 3.9537 -10.5979 -1.3090 38 1 2.2102 -10.9922 -1.3687 39 1 2.5578 -3.8510 -0.8833 40 1 2.5286 -3.8642 0.9022 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226591375.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:39 Heat of formation + Delta-G solvation = -36.215152 kcal Electronic energy + Delta-G solvation = -23046.656451 eV Core-core repulsion = 19633.815651 eV Total energy + Delta-G solvation = -3412.840800 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.21836 -40.37864 -38.96374 -38.10564 -36.03721 -34.42072 -32.64829 -31.19130 -30.03978 -28.94760 -28.60914 -26.62934 -24.27709 -23.48729 -22.31192 -21.85786 -21.49059 -19.83806 -19.13572 -18.43895 -18.15392 -17.24355 -16.80681 -16.41485 -16.16297 -15.96908 -15.58063 -15.39482 -14.78726 -14.49462 -14.33331 -14.05405 -13.72498 -13.63434 -13.42450 -13.05295 -12.98478 -12.76356 -12.72739 -12.60993 -12.21134 -12.06773 -12.04049 -11.94970 -11.82965 -11.75580 -11.47341 -10.82065 -10.50424 -10.03755 -9.55633 -8.99600 -7.83988 -5.30141 -0.13443 0.16711 1.46265 1.46835 1.57285 1.87798 2.31006 2.45984 2.60595 3.27261 3.28924 3.42339 3.53776 3.58970 3.81105 3.81931 3.91944 3.94939 4.18714 4.21253 4.39628 4.48557 4.55740 4.60397 4.70597 4.78619 4.83412 4.87329 4.90113 4.91783 5.00076 5.12792 5.22276 5.36320 5.39518 5.42402 5.50754 5.70053 6.12317 6.23370 6.54857 6.87316 7.03183 7.67677 8.30043 9.18288 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023282 B = 0.003724 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.365690 B = 7517.173768 C = 7954.022513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.060 4.060 3 Si 0.983 3.017 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.246 4.246 8 H 0.080 0.920 9 N -0.622 5.622 10 C 0.154 3.846 11 C -0.121 4.121 12 C 0.080 3.920 13 H 0.095 0.905 14 O -0.296 6.296 15 C 0.185 3.815 16 C -0.287 4.287 17 C 0.345 3.655 18 O -0.487 6.487 19 N -0.545 5.545 20 C 0.164 3.836 21 C -0.208 4.208 22 C -0.069 4.069 23 C -0.107 4.107 24 C -0.065 4.065 25 C 0.121 3.879 26 H 0.250 0.750 27 H 0.001 0.999 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.149 0.851 32 H 0.421 0.579 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.027 0.973 40 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.375 -19.777 -3.572 20.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.253 4.253 3 Si 0.811 3.189 4 H -0.193 1.193 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.374 4.374 8 H 0.098 0.902 9 N -0.350 5.350 10 C 0.029 3.971 11 C -0.160 4.160 12 C 0.024 3.976 13 H 0.113 0.887 14 O -0.206 6.206 15 C 0.131 3.869 16 C -0.309 4.309 17 C 0.166 3.834 18 O -0.298 6.298 19 N -0.268 5.268 20 C 0.028 3.972 21 C -0.210 4.210 22 C -0.107 4.107 23 C -0.144 4.144 24 C -0.103 4.103 25 C -0.005 4.005 26 H 0.060 0.940 27 H 0.019 0.981 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.116 0.884 31 H 0.167 0.833 32 H 0.282 0.718 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.131 0.869 37 H 0.117 0.883 38 H 0.127 0.873 39 H 0.045 0.955 40 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 4.141 -20.410 -3.271 21.082 hybrid contribution 0.343 2.369 0.516 2.449 sum 4.484 -18.041 -2.755 18.793 Atomic orbital electron populations 1.69986 1.06168 1.25334 1.58052 1.25634 0.96691 1.00936 1.02066 0.84950 0.77989 0.79050 0.76933 1.19286 1.21516 1.21652 1.19465 0.91032 0.83472 1.43446 0.90224 1.44650 1.02796 1.00362 1.87145 1.21848 0.84042 0.93865 0.97316 1.23067 0.96563 0.95036 1.01293 1.23521 0.95943 0.83758 0.94382 0.88719 1.86153 1.72276 1.24261 1.37959 1.19090 0.90014 0.86935 0.90820 1.22185 1.11535 1.02206 0.94983 1.18620 0.93042 0.87405 0.84337 1.84705 1.41743 1.86617 1.16708 1.66365 1.24235 1.28989 1.07211 1.22138 0.91197 0.95439 0.88440 1.21206 1.05928 0.93566 1.00346 1.20915 1.01647 0.99828 0.88292 1.22353 1.00019 0.96080 0.95963 1.21204 1.04610 0.94522 0.89941 1.21723 0.94703 0.85620 0.98487 0.93971 0.98094 0.89709 0.90770 0.88424 0.83327 0.71778 0.89159 0.90913 0.90055 0.86890 0.88257 0.87314 0.95465 0.95125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.22 10.08 21.65 0.22 -55.00 16 2 C -0.06 -3.38 5.49 84.86 0.47 -2.91 16 3 Si 0.98 45.04 29.55 68.60 2.03 47.06 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 7 C -0.25 -13.78 10.27 84.03 0.86 -12.91 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 9 N -0.62 -32.21 3.39 -691.57 -2.35 -34.56 16 10 C 0.15 7.47 5.91 86.93 0.51 7.98 16 11 C -0.12 -4.52 6.83 32.06 0.22 -4.30 16 12 C 0.08 2.86 2.84 31.78 0.09 2.95 16 13 H 0.10 3.12 5.97 -2.39 -0.01 3.11 16 14 O -0.30 -9.92 9.86 -90.65 -0.89 -10.82 16 15 C 0.18 5.68 6.73 22.75 0.15 5.83 16 16 C -0.29 -8.55 9.01 22.54 0.20 -8.35 16 17 C 0.34 9.89 7.74 84.74 0.66 10.54 16 18 O -0.49 -11.97 13.56 -90.07 -1.22 -13.19 16 19 N -0.54 -15.62 10.37 -296.29 -3.07 -18.69 16 20 C 0.16 4.05 7.31 42.63 0.31 4.36 16 21 C -0.21 -5.45 6.13 -19.48 -0.12 -5.57 16 22 C -0.07 -1.32 6.74 30.48 0.21 -1.12 16 23 C -0.11 -1.30 7.08 31.51 0.22 -1.08 16 24 C -0.07 -0.98 6.77 30.55 0.21 -0.77 16 25 C 0.12 5.13 7.01 86.73 0.61 5.74 16 26 H 0.25 14.10 8.31 -92.70 -0.77 13.33 16 27 H 0.00 0.05 8.14 -2.39 -0.02 0.04 16 28 H 0.09 4.66 5.86 -2.39 -0.01 4.64 16 29 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 30 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 31 H 0.15 4.37 6.01 -2.91 -0.02 4.35 16 32 H 0.42 6.06 9.06 -74.06 -0.67 5.39 16 33 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.11 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.03 1.20 8.06 -2.38 -0.02 1.18 16 40 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -69.81 326.52 -0.29 -70.11 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.40 Total: 14.71 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 4.60 Total: 0.38 kcal Atomic # 7 Polarization: -103.05 SS G_CDS: -5.20 Total: -108.26 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -2.12 Total: -24.01 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -69.81 -0.29 -70.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226591375.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.894 kcal (2) G-P(sol) polarization free energy of solvation -69.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds