Wall clock time and date at job start Tue Mar 31 2020 06:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33085 * 1 3 3 C 1.50705 * 119.99979 * 2 1 4 4 C 1.46944 * 119.99894 * 179.97438 * 2 1 3 5 5 O 1.21536 * 120.00137 * 359.97438 * 4 2 1 6 6 O 1.34802 * 120.00292 * 179.97438 * 4 2 1 7 7 C 1.45201 * 117.00408 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.47126 * 179.97438 * 7 6 4 9 9 H 1.08994 * 109.46883 * 175.00084 * 8 7 6 10 10 C 1.53006 * 109.46810 * 55.00306 * 8 7 6 11 11 O 1.42898 * 109.47327 * 295.00213 * 8 7 6 12 12 C 1.35634 * 117.00106 * 204.06542 * 11 8 7 13 13 C 1.38451 * 120.26742 * 2.61985 * 12 11 8 14 14 C 1.38308 * 120.05260 * 179.75234 * 13 12 11 15 15 C 1.38822 * 120.59069 * 0.55449 * 14 13 12 16 16 C 1.36487 * 120.53778 * 359.70363 * 15 14 13 17 17 C 1.40727 * 119.93115 * 0.02562 * 16 15 14 18 18 C 1.41156 * 120.29282 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00298 * 150.42428 * 18 17 16 20 20 C 1.39934 * 119.99613 * 330.43002 * 18 17 16 21 21 N 1.30866 * 120.00322 * 349.48864 * 20 18 17 22 22 Si 1.86797 * 120.00094 * 169.49159 * 20 18 17 23 23 H 1.48508 * 109.46862 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47595 * 119.99565 * 22 20 18 25 25 H 1.48501 * 109.47462 * 240.00008 * 22 20 18 26 26 H 1.08000 * 119.99574 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.00209 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46674 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.46994 * 300.00087 * 3 2 1 30 30 H 1.08997 * 109.46807 * 60.00141 * 3 2 1 31 31 H 1.09003 * 109.47009 * 300.00400 * 7 6 4 32 32 H 1.08995 * 109.46821 * 59.99866 * 7 6 4 33 33 H 1.09003 * 109.46746 * 179.97438 * 10 8 7 34 34 H 1.08994 * 109.47216 * 299.99573 * 10 8 7 35 35 H 1.08993 * 109.47347 * 60.00056 * 10 8 7 36 36 H 1.08007 * 119.96915 * 0.02562 * 13 12 11 37 37 H 1.07996 * 119.70191 * 180.27419 * 14 13 12 38 38 H 1.07990 * 119.72927 * 179.72145 * 15 14 13 39 39 H 1.07999 * 120.03836 * 180.02562 * 16 15 14 40 40 H 0.96997 * 120.00389 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3309 0.0000 0.0000 3 6 2.0844 1.3051 0.0000 4 6 2.0655 -1.2726 0.0006 5 8 1.4579 -2.3251 0.0015 6 8 3.4136 -1.2727 0.0000 7 6 4.0728 -2.5664 0.0012 8 6 5.5896 -2.3660 -0.0002 9 1 6.0839 -3.3331 0.0902 10 6 5.9877 -1.4774 1.1800 11 8 5.9863 -1.7407 -1.2223 12 6 7.2676 -1.9316 -1.6242 13 6 8.1143 -2.7467 -0.8924 14 6 9.4185 -2.9424 -1.3090 15 6 9.8958 -2.3183 -2.4535 16 6 9.0836 -1.5056 -3.1902 17 6 7.7509 -1.2953 -2.7898 18 6 6.9041 -0.4568 -3.5463 19 1 5.8400 -0.6400 -3.5658 20 6 7.4435 0.6119 -4.2709 21 7 8.6913 0.9621 -4.0894 22 14 6.3825 1.5388 -5.4975 23 1 5.0191 0.9504 -5.5164 24 1 6.3000 2.9674 -5.1006 25 1 6.9847 1.4350 -6.8509 26 1 -0.5399 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 3.1560 1.1059 0.0005 29 1 1.8210 1.8767 -0.8899 30 1 1.8210 1.8766 0.8900 31 1 3.7802 -3.1225 0.8919 32 1 3.7795 -3.1244 -0.8880 33 1 7.0683 -1.3349 1.1792 34 1 5.4933 -0.5102 1.0896 35 1 5.6851 -1.9543 2.1122 36 1 7.7547 -3.2337 0.0021 37 1 10.0728 -3.5830 -0.7363 38 1 10.9179 -2.4774 -2.7636 39 1 9.4631 -1.0244 -4.0794 40 1 9.0652 1.7030 -4.5914 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230275655.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:42 Heat of formation + Delta-G solvation = -89.039889 kcal Electronic energy + Delta-G solvation = -22978.746655 eV Core-core repulsion = 19531.322451 eV Total energy + Delta-G solvation = -3447.424204 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.35453 -38.93038 -36.88345 -35.93630 -34.71757 -33.53567 -31.98305 -29.54050 -28.55607 -27.40544 -26.86468 -25.10001 -23.98355 -22.09224 -20.74894 -19.80855 -19.43047 -17.60817 -17.23886 -16.71036 -16.32013 -16.10463 -15.24656 -14.60483 -14.42818 -14.15631 -13.87675 -13.53885 -13.50616 -13.09958 -13.00819 -12.66543 -12.36730 -12.34868 -12.14704 -11.71496 -11.59992 -11.47901 -11.16953 -11.05313 -10.95276 -10.66879 -10.51963 -10.41824 -10.33177 -9.90465 -9.68111 -9.58198 -9.35571 -9.17242 -7.42436 -6.96164 -6.61405 -4.22080 1.06427 2.74797 2.78073 2.94852 2.99471 3.12948 3.19866 3.21668 4.02134 4.11668 4.64971 4.71273 4.78758 4.95234 5.20550 5.25837 5.40006 5.42648 5.58919 5.60972 5.65224 5.76564 5.86156 5.94072 6.08214 6.09179 6.16989 6.31687 6.36712 6.46372 6.51689 6.60180 6.95002 7.15622 7.32546 7.39613 7.73920 7.79915 7.82735 8.07896 8.25033 8.43769 8.75829 8.91398 9.10259 10.31555 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.012741 B = 0.005500 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.022976 B = 5089.710029 C = 6829.619969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.149 4.149 3 C -0.121 4.121 4 C 0.498 3.502 5 O -0.519 6.519 6 O -0.330 6.330 7 C 0.077 3.923 8 C 0.083 3.917 9 H 0.085 0.915 10 C -0.173 4.173 11 O -0.293 6.293 12 C 0.016 3.984 13 C -0.184 4.184 14 C -0.209 4.209 15 C -0.130 4.130 16 C -0.138 4.138 17 C 0.097 3.903 18 C -0.444 4.444 19 H 0.080 0.920 20 C 0.071 3.929 21 N -0.807 5.807 22 Si 0.909 3.091 23 H -0.261 1.261 24 H -0.275 1.275 25 H -0.274 1.274 26 H 0.123 0.877 27 H 0.115 0.885 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.125 0.875 40 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.998 -0.221 7.618 12.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.150 4.150 3 C -0.177 4.177 4 C 0.344 3.656 5 O -0.410 6.410 6 O -0.246 6.246 7 C 0.004 3.996 8 C 0.026 3.974 9 H 0.103 0.897 10 C -0.230 4.230 11 O -0.208 6.208 12 C -0.028 4.028 13 C -0.203 4.203 14 C -0.228 4.228 15 C -0.149 4.149 16 C -0.157 4.157 17 C 0.095 3.905 18 C -0.474 4.474 19 H 0.098 0.902 20 C -0.144 4.144 21 N -0.435 5.435 22 Si 0.734 3.266 23 H -0.185 1.185 24 H -0.201 1.201 25 H -0.199 1.199 26 H 0.141 0.859 27 H 0.134 0.866 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.142 0.858 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.108 -0.251 7.437 12.552 hybrid contribution -0.207 0.158 -0.302 0.399 sum -10.315 -0.093 7.135 12.542 Atomic orbital electron populations 1.24677 0.94218 1.03675 0.91484 1.21065 0.94662 0.93032 1.06236 1.20849 1.01856 0.92725 1.02317 1.21471 0.81594 0.89971 0.72595 1.90824 1.69709 1.33803 1.46711 1.86669 1.19750 1.35069 1.83087 1.23226 0.91024 0.82530 1.02857 1.22228 0.91170 0.97555 0.86455 0.89726 1.22234 1.02912 1.01346 0.96505 1.86101 1.27065 1.70609 1.37008 1.19239 0.83421 1.03576 0.96575 1.20610 0.95527 1.03274 1.00839 1.20150 0.95303 1.06857 1.00528 1.20402 0.98147 0.99683 0.96649 1.20925 0.94086 0.99859 1.00880 1.17070 0.92718 0.91714 0.89018 1.19418 0.95438 1.09249 1.23330 0.90182 1.25848 0.95207 0.97107 0.96254 1.69810 1.14029 1.24354 1.35272 0.86248 0.81065 0.79216 0.80114 1.18476 1.20076 1.19946 0.85929 0.86631 0.89796 0.90794 0.91103 0.89979 0.90346 0.91476 0.90974 0.92406 0.88592 0.89385 0.89355 0.85756 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 13.96 28.94 0.40 -0.57 16 2 C -0.15 -1.81 6.00 -102.89 -0.62 -2.42 16 3 C -0.12 -1.31 10.04 36.01 0.36 -0.95 16 4 C 0.50 7.69 7.88 34.26 0.27 7.96 16 5 O -0.52 -8.91 16.01 -19.29 -0.31 -9.22 16 6 O -0.33 -5.44 8.29 -43.56 -0.36 -5.80 16 7 C 0.08 1.21 5.34 37.16 0.20 1.40 16 8 C 0.08 1.43 2.65 -26.73 -0.07 1.36 16 9 H 0.09 1.35 5.98 -51.93 -0.31 1.04 16 10 C -0.17 -2.69 9.08 37.16 0.34 -2.35 16 11 O -0.29 -6.63 9.12 -22.17 -0.20 -6.83 16 12 C 0.02 0.39 6.60 -38.33 -0.25 0.14 16 13 C -0.18 -4.06 8.38 -39.48 -0.33 -4.39 16 14 C -0.21 -4.64 10.04 -39.34 -0.39 -5.04 16 15 C -0.13 -3.06 9.97 -40.00 -0.40 -3.46 16 16 C -0.14 -3.59 8.60 -39.27 -0.34 -3.93 16 17 C 0.10 2.63 5.55 -106.68 -0.59 2.04 16 18 C -0.44 -12.09 8.68 -37.84 -0.33 -12.42 16 19 H 0.08 2.19 7.71 -52.49 -0.40 1.79 16 20 C 0.07 1.82 5.25 -17.33 -0.09 1.73 16 21 N -0.81 -21.17 10.88 55.55 0.60 -20.57 16 22 Si 0.91 19.31 29.57 -169.99 -5.03 14.29 16 23 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 24 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 26 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 27 H 0.12 1.13 7.49 -52.49 -0.39 0.74 16 28 H 0.08 1.08 7.16 -51.93 -0.37 0.71 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.07 1.13 7.39 -51.93 -0.38 0.75 16 34 H 0.07 1.17 7.55 -51.93 -0.39 0.78 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 1.82 5.70 -52.48 -0.30 1.52 16 37 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 39 H 0.12 3.33 6.27 -52.49 -0.33 3.01 16 40 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 LS Contribution 341.62 15.07 5.15 5.15 Total: -1.00 -30.29 341.62 -7.39 -37.68 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -5.40 Total: 6.20 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -1.84 Total: -20.91 kcal Atomic # 7 Polarization: -21.17 SS G_CDS: 0.60 Total: -20.57 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.87 Total: -21.85 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.29 -7.39 -37.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230275655.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.358 kcal (2) G-P(sol) polarization free energy of solvation -30.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds