Wall clock time and date at job start Tue Mar 31 2020 06:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33085 * 1 3 3 C 1.50705 * 119.99979 * 2 1 4 4 C 1.46944 * 119.99894 * 179.97438 * 2 1 3 5 5 O 1.21536 * 120.00137 * 359.97438 * 4 2 1 6 6 O 1.34802 * 120.00292 * 179.97438 * 4 2 1 7 7 C 1.45201 * 117.00408 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.47126 * 179.97438 * 7 6 4 9 9 H 1.08994 * 109.46883 * 175.00084 * 8 7 6 10 10 C 1.53006 * 109.46810 * 55.00306 * 8 7 6 11 11 O 1.42898 * 109.47327 * 295.00213 * 8 7 6 12 12 C 1.35634 * 117.00106 * 204.06542 * 11 8 7 13 13 C 1.38451 * 120.26742 * 2.61985 * 12 11 8 14 14 C 1.38308 * 120.05260 * 179.75234 * 13 12 11 15 15 C 1.38822 * 120.59069 * 0.55449 * 14 13 12 16 16 C 1.36487 * 120.53778 * 359.70363 * 15 14 13 17 17 C 1.40727 * 119.93115 * 0.02562 * 16 15 14 18 18 C 1.41156 * 120.29282 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00298 * 150.42428 * 18 17 16 20 20 C 1.39934 * 119.99613 * 330.43002 * 18 17 16 21 21 N 1.30866 * 120.00322 * 349.48864 * 20 18 17 22 22 Si 1.86797 * 120.00094 * 169.49159 * 20 18 17 23 23 H 1.48508 * 109.46862 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47595 * 119.99565 * 22 20 18 25 25 H 1.48501 * 109.47462 * 240.00008 * 22 20 18 26 26 H 1.08000 * 119.99574 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.00209 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46674 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.46994 * 300.00087 * 3 2 1 30 30 H 1.08997 * 109.46807 * 60.00141 * 3 2 1 31 31 H 1.09003 * 109.47009 * 300.00400 * 7 6 4 32 32 H 1.08995 * 109.46821 * 59.99866 * 7 6 4 33 33 H 1.09003 * 109.46746 * 179.97438 * 10 8 7 34 34 H 1.08994 * 109.47216 * 299.99573 * 10 8 7 35 35 H 1.08993 * 109.47347 * 60.00056 * 10 8 7 36 36 H 1.08007 * 119.96915 * 0.02562 * 13 12 11 37 37 H 1.07996 * 119.70191 * 180.27419 * 14 13 12 38 38 H 1.07990 * 119.72927 * 179.72145 * 15 14 13 39 39 H 1.07999 * 120.03836 * 180.02562 * 16 15 14 40 40 H 0.96997 * 120.00389 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3309 0.0000 0.0000 3 6 2.0844 1.3051 0.0000 4 6 2.0655 -1.2726 0.0006 5 8 1.4579 -2.3251 0.0015 6 8 3.4136 -1.2727 0.0000 7 6 4.0728 -2.5664 0.0012 8 6 5.5896 -2.3660 -0.0002 9 1 6.0839 -3.3331 0.0902 10 6 5.9877 -1.4774 1.1800 11 8 5.9863 -1.7407 -1.2223 12 6 7.2676 -1.9316 -1.6242 13 6 8.1143 -2.7467 -0.8924 14 6 9.4185 -2.9424 -1.3090 15 6 9.8958 -2.3183 -2.4535 16 6 9.0836 -1.5056 -3.1902 17 6 7.7509 -1.2953 -2.7898 18 6 6.9041 -0.4568 -3.5463 19 1 5.8400 -0.6400 -3.5658 20 6 7.4435 0.6119 -4.2709 21 7 8.6913 0.9621 -4.0894 22 14 6.3825 1.5388 -5.4975 23 1 5.0191 0.9504 -5.5164 24 1 6.3000 2.9674 -5.1006 25 1 6.9847 1.4350 -6.8509 26 1 -0.5399 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 3.1560 1.1059 0.0005 29 1 1.8210 1.8767 -0.8899 30 1 1.8210 1.8766 0.8900 31 1 3.7802 -3.1225 0.8919 32 1 3.7795 -3.1244 -0.8880 33 1 7.0683 -1.3349 1.1792 34 1 5.4933 -0.5102 1.0896 35 1 5.6851 -1.9543 2.1122 36 1 7.7547 -3.2337 0.0021 37 1 10.0728 -3.5830 -0.7363 38 1 10.9179 -2.4774 -2.7636 39 1 9.4631 -1.0244 -4.0794 40 1 9.0652 1.7030 -4.5914 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230275655.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:41 Heat of formation + Delta-G solvation = -104.659798 kcal Electronic energy + Delta-G solvation = -22979.423985 eV Core-core repulsion = 19531.322451 eV Total energy + Delta-G solvation = -3448.101534 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.57238 -40.60086 -38.40061 -37.42388 -35.64705 -35.43737 -33.41763 -31.41333 -30.36837 -28.35344 -27.98278 -27.02318 -25.12618 -23.67902 -22.58049 -21.36357 -20.54799 -19.38335 -18.66702 -18.11412 -17.58187 -17.41535 -16.93391 -16.16794 -15.96824 -15.87659 -15.25338 -14.83688 -14.52411 -14.49761 -14.36504 -14.08642 -13.77287 -13.73313 -13.38468 -13.24445 -12.99674 -12.90249 -12.73641 -12.66741 -12.49900 -12.22385 -12.05294 -11.81222 -11.58514 -11.57048 -11.46785 -11.12715 -11.05892 -10.41259 -9.32313 -8.82158 -8.50146 -6.21873 0.12227 0.94924 1.11546 1.37029 1.48535 1.51816 1.65899 1.89331 2.24672 2.59796 2.80071 3.55130 3.68105 3.70677 3.93076 3.97029 4.09110 4.22121 4.40119 4.43934 4.51335 4.54303 4.64562 4.76458 4.81750 4.83280 4.88478 5.06912 5.11387 5.22597 5.24203 5.27643 5.36519 5.46857 5.50023 5.53589 5.88749 5.93101 6.17843 6.33987 6.53839 6.64161 6.84572 6.96379 7.25943 8.43771 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.012741 B = 0.005500 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.022976 B = 5089.710029 C = 6829.619969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.185 4.185 3 C -0.114 4.114 4 C 0.492 3.508 5 O -0.546 6.546 6 O -0.345 6.345 7 C 0.077 3.923 8 C 0.076 3.924 9 H 0.102 0.898 10 C -0.165 4.165 11 O -0.319 6.319 12 C 0.011 3.989 13 C -0.184 4.184 14 C -0.198 4.198 15 C -0.141 4.141 16 C -0.158 4.158 17 C 0.056 3.944 18 C -0.480 4.480 19 H 0.062 0.938 20 C 0.032 3.968 21 N -0.839 5.839 22 Si 0.977 3.023 23 H -0.265 1.265 24 H -0.264 1.264 25 H -0.262 1.262 26 H 0.162 0.838 27 H 0.112 0.888 28 H 0.053 0.947 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.132 0.868 37 H 0.126 0.874 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.055 -0.294 9.056 14.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.186 4.186 3 C -0.170 4.170 4 C 0.340 3.660 5 O -0.439 6.439 6 O -0.261 6.261 7 C 0.004 3.996 8 C 0.019 3.981 9 H 0.120 0.880 10 C -0.222 4.222 11 O -0.235 6.235 12 C -0.033 4.033 13 C -0.203 4.203 14 C -0.217 4.217 15 C -0.159 4.159 16 C -0.178 4.178 17 C 0.053 3.947 18 C -0.511 4.511 19 H 0.080 0.920 20 C -0.180 4.180 21 N -0.467 5.467 22 Si 0.798 3.202 23 H -0.189 1.189 24 H -0.189 1.189 25 H -0.187 1.187 26 H 0.180 0.820 27 H 0.130 0.870 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.113 0.887 31 H 0.131 0.869 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.150 0.850 37 H 0.144 0.856 38 H 0.130 0.870 39 H 0.124 0.876 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.154 -0.331 8.892 14.269 hybrid contribution 0.067 0.058 -0.601 0.608 sum -11.087 -0.274 8.291 13.847 Atomic orbital electron populations 1.25052 0.93085 1.05373 0.86671 1.21157 0.95517 0.91890 1.10020 1.20795 0.99820 0.92559 1.03869 1.22164 0.81118 0.91054 0.71672 1.90796 1.69834 1.34890 1.48389 1.86680 1.20727 1.35421 1.83297 1.23255 0.90061 0.82607 1.03691 1.22603 0.92282 0.98248 0.84940 0.88010 1.22174 1.01799 1.00798 0.97446 1.86066 1.26278 1.71512 1.39600 1.19395 0.84524 1.03221 0.96171 1.20989 0.95262 1.02472 1.01568 1.20640 0.95722 1.05687 0.99638 1.20698 0.99049 0.99193 0.96970 1.20888 0.94528 1.01164 1.01197 1.17448 0.93541 0.93071 0.90605 1.19460 0.94714 1.11067 1.25860 0.91990 1.26600 0.96511 0.97429 0.97504 1.69859 1.15364 1.25151 1.36303 0.85241 0.78909 0.78064 0.77986 1.18949 1.18913 1.18689 0.82016 0.86958 0.92746 0.90056 0.88744 0.86932 0.91655 0.92772 0.92330 0.88638 0.85034 0.85613 0.86970 0.87604 0.90507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.05 13.96 66.66 0.93 -0.12 16 2 C -0.18 -4.28 6.00 -18.74 -0.11 -4.39 16 3 C -0.11 -2.36 10.04 71.24 0.71 -1.65 16 4 C 0.49 15.20 7.88 70.10 0.55 15.75 16 5 O -0.55 -18.68 16.01 19.72 0.32 -18.36 16 6 O -0.35 -11.54 8.29 -54.48 -0.45 -11.99 16 7 C 0.08 2.39 5.34 71.98 0.38 2.77 16 8 C 0.08 2.54 2.65 30.60 0.08 2.62 16 9 H 0.10 3.02 5.98 -2.39 -0.01 3.01 16 10 C -0.16 -4.93 9.08 71.98 0.65 -4.27 16 11 O -0.32 -14.79 9.12 -86.06 -0.79 -15.58 16 12 C 0.01 0.57 6.60 23.08 0.15 0.72 16 13 C -0.18 -7.86 8.38 22.34 0.19 -7.67 16 14 C -0.20 -8.33 10.04 22.43 0.23 -8.10 16 15 C -0.14 -6.53 9.97 22.00 0.22 -6.32 16 16 C -0.16 -8.50 8.60 22.47 0.19 -8.31 16 17 C 0.06 3.13 5.55 -21.20 -0.12 3.01 16 18 C -0.48 -27.59 8.68 23.40 0.20 -27.39 16 19 H 0.06 3.63 7.71 -2.91 -0.02 3.60 16 20 C 0.03 1.68 5.25 85.25 0.45 2.13 16 21 N -0.84 -45.60 10.88 21.83 0.24 -45.36 16 22 Si 0.98 40.82 29.57 68.60 2.03 42.85 16 23 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 24 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 25 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 26 H 0.16 1.34 8.06 -2.91 -0.02 1.31 16 27 H 0.11 1.94 7.49 -2.91 -0.02 1.91 16 28 H 0.05 1.44 7.16 -2.38 -0.02 1.43 16 29 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.07 2.15 8.14 -2.39 -0.02 2.14 16 33 H 0.05 1.75 7.39 -2.39 -0.02 1.73 16 34 H 0.06 1.90 7.55 -2.39 -0.02 1.88 16 35 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.13 4.58 5.70 -2.91 -0.02 4.56 16 37 H 0.13 4.35 8.06 -2.91 -0.02 4.32 16 38 H 0.11 4.55 8.06 -2.92 -0.02 4.53 16 39 H 0.11 5.97 6.27 -2.91 -0.02 5.95 16 40 H 0.28 13.98 8.30 -92.71 -0.77 13.21 16 Total: -1.00 -69.32 341.62 7.10 -62.22 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: 1.04 Total: 27.46 kcal Atomic # 6 Polarization: -45.94 SS G_CDS: 4.72 Total: -41.23 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.24 Total: -45.36 kcal Atomic # 8 Polarization: -45.02 SS G_CDS: -0.92 Total: -45.94 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Total: -69.32 7.10 -62.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230275655.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.439 kcal (2) G-P(sol) polarization free energy of solvation -69.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds