Wall clock time and date at job start Tue Mar 31 2020 06:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45199 * 109.46966 * 2 1 4 4 C 1.34234 * 117.00022 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99801 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00074 * 179.97438 * 4 3 2 7 7 C 1.53778 * 113.61761 * 279.13872 * 6 4 3 8 8 C 1.53953 * 87.02020 * 220.04776 * 7 6 4 9 9 O 1.42897 * 113.61346 * 270.79733 * 8 7 6 10 10 C 1.35643 * 117.00426 * 254.81956 * 9 8 7 11 11 C 1.38439 * 120.26011 * 6.00705 * 10 9 8 12 12 C 1.38312 * 120.04604 * 180.02562 * 11 10 9 13 13 C 1.38821 * 120.59479 * 0.02562 * 12 11 10 14 14 C 1.36492 * 120.53677 * 0.02562 * 13 12 11 15 15 C 1.40728 * 119.92699 * 359.67886 * 14 13 12 16 16 C 1.41154 * 120.29107 * 180.32528 * 15 14 13 17 17 H 1.08001 * 119.99702 * 206.51323 * 16 15 14 18 18 C 1.39931 * 120.00099 * 26.50859 * 16 15 14 19 19 N 1.30872 * 119.99846 * 13.20548 * 18 16 15 20 20 Si 1.86792 * 120.00193 * 193.20239 * 18 16 15 21 21 H 1.48498 * 109.47176 * 60.00015 * 20 18 16 22 22 H 1.48497 * 109.47224 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47340 * 300.00311 * 20 18 16 24 24 C 1.53781 * 113.61325 * 181.52940 * 6 4 3 25 25 H 1.09001 * 109.47083 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47520 * 299.99977 * 1 2 3 27 27 H 1.09004 * 109.47124 * 60.00263 * 1 2 3 28 28 H 1.08996 * 109.47142 * 239.99817 * 2 1 3 29 29 H 1.09004 * 109.47124 * 119.99736 * 2 1 3 30 30 H 1.08997 * 112.84753 * 50.33757 * 6 4 3 31 31 H 1.08997 * 113.61366 * 334.57314 * 7 6 4 32 32 H 1.09003 * 113.61364 * 105.46695 * 7 6 4 33 33 H 1.08997 * 113.66095 * 139.93276 * 8 7 6 34 34 H 1.07996 * 119.98076 * 0.02744 * 11 10 9 35 35 H 1.08002 * 119.70252 * 179.97438 * 12 11 10 36 36 H 1.07998 * 119.73117 * 180.02562 * 13 12 11 37 37 H 1.07996 * 120.03513 * 180.02562 * 14 13 12 38 38 H 0.96995 * 119.99840 * 179.97438 * 19 18 16 39 39 H 1.09002 * 113.61638 * 254.53247 * 24 6 4 40 40 H 1.09002 * 113.61088 * 25.35528 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9375 0.0000 7 6 3.9500 3.5915 -1.3915 8 6 5.3322 4.1522 -1.0103 9 8 5.2748 5.4238 -0.3609 10 6 5.6355 6.5066 -1.0939 11 6 5.9172 6.3735 -2.4428 12 6 6.2850 7.4805 -3.1860 13 6 6.3763 8.7318 -2.5918 14 6 6.1050 8.8903 -1.2636 15 6 5.7227 7.7802 -0.4877 16 6 5.4336 7.9366 0.8850 17 1 5.5603 7.1044 1.5617 18 6 4.9831 9.1697 1.3691 19 7 4.5833 10.0942 0.5335 20 14 4.9520 9.4963 3.2080 21 1 6.3273 9.3770 3.7552 22 1 4.4361 10.8660 3.4588 23 1 4.0674 8.5054 3.8720 24 6 5.4577 2.9683 -0.0369 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.4896 3.5740 0.7726 31 1 3.9809 2.8734 -2.2109 32 1 3.1889 4.3596 -1.5290 33 1 6.0551 4.1256 -1.8257 34 1 5.8497 5.4047 -2.9152 35 1 6.5040 7.3702 -4.2378 36 1 6.6644 9.5868 -3.1854 37 1 6.1782 9.8675 -0.8098 38 1 4.2707 10.9488 0.8691 39 1 5.9122 3.2341 0.9175 40 1 5.9016 2.0789 -0.4840 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230275911.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:23 Heat of formation + Delta-G solvation = -99.000043 kcal Electronic energy + Delta-G solvation = -22571.437354 eV Core-core repulsion = 19123.581246 eV Total energy + Delta-G solvation = -3447.856108 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.97450 -40.72601 -39.07943 -37.69643 -36.54744 -35.44353 -32.65118 -31.57688 -30.38414 -28.01944 -27.01063 -26.80748 -24.36803 -23.31761 -22.54388 -22.04686 -20.26171 -19.49631 -18.91841 -18.21944 -17.72055 -17.38188 -17.08986 -16.37758 -15.95878 -15.78920 -15.51704 -15.01272 -14.80748 -14.49937 -14.35540 -13.87649 -13.61535 -13.51442 -13.34578 -13.01859 -12.96580 -12.89474 -12.79072 -12.69257 -12.49941 -12.17268 -12.09854 -11.79151 -11.56017 -11.54174 -11.41502 -11.13838 -11.03501 -10.99803 -9.33646 -8.83621 -8.50137 -6.20477 0.97617 1.04993 1.12971 1.39853 1.50665 1.54512 1.64425 2.25134 2.56196 2.79979 3.28099 3.44342 3.60233 3.76484 3.81164 3.98774 4.06179 4.10319 4.24228 4.32792 4.46186 4.58078 4.60338 4.68373 4.79874 4.80544 4.89183 4.90566 4.95197 5.06533 5.12463 5.15746 5.26166 5.41280 5.48218 5.53938 5.90450 5.94401 6.20284 6.34566 6.56395 6.65944 6.84471 6.97030 7.26664 8.41964 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015512 B = 0.004043 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.621117 B = 6923.344399 C = 8036.293134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.050 3.950 3 O -0.363 6.363 4 C 0.482 3.518 5 O -0.531 6.531 6 C -0.104 4.104 7 C -0.129 4.129 8 C 0.049 3.951 9 O -0.304 6.304 10 C 0.005 3.995 11 C -0.179 4.179 12 C -0.204 4.204 13 C -0.138 4.138 14 C -0.165 4.165 15 C 0.058 3.942 16 C -0.482 4.482 17 H 0.070 0.930 18 C 0.033 3.967 19 N -0.834 5.834 20 Si 0.978 3.022 21 H -0.262 1.262 22 H -0.267 1.267 23 H -0.264 1.264 24 C -0.105 4.105 25 H 0.103 0.897 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.124 0.876 31 H 0.115 0.885 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.131 0.869 35 H 0.124 0.876 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.285 0.715 39 H 0.083 0.917 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.100 -14.501 -1.613 15.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.023 4.023 3 O -0.280 6.280 4 C 0.326 3.674 5 O -0.421 6.421 6 C -0.123 4.123 7 C -0.167 4.167 8 C -0.008 4.008 9 O -0.219 6.219 10 C -0.039 4.039 11 C -0.198 4.198 12 C -0.223 4.223 13 C -0.156 4.156 14 C -0.185 4.185 15 C 0.056 3.944 16 C -0.512 4.512 17 H 0.088 0.912 18 C -0.180 4.180 19 N -0.462 5.462 20 Si 0.800 3.200 21 H -0.186 1.186 22 H -0.191 1.191 23 H -0.188 1.188 24 C -0.142 4.142 25 H 0.121 0.879 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.142 0.858 31 H 0.133 0.867 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.097 -14.585 -1.420 15.515 hybrid contribution -0.052 0.259 0.609 0.664 sum -5.149 -14.326 -0.810 15.245 Atomic orbital electron populations 1.21835 0.90597 1.04420 1.03601 1.23336 0.97074 0.79155 1.02744 1.86563 1.24085 1.33940 1.83367 1.23696 0.80578 0.92186 0.70891 1.90616 1.61015 1.43600 1.46895 1.22524 0.97539 0.90102 1.02089 1.23426 0.98289 1.00039 0.94942 1.23305 0.98031 0.82640 0.96801 1.85934 1.83234 1.13015 1.39706 1.19346 1.06594 0.87466 0.90525 1.20992 1.06523 0.99548 0.92733 1.20621 1.09922 0.92344 0.99458 1.20698 1.02656 0.97302 0.94992 1.20938 1.04528 0.98759 0.94232 1.17445 0.93241 0.89350 0.94402 1.19514 1.40464 0.97397 0.93856 0.91195 1.26644 0.91971 0.94838 1.04568 1.69863 1.31719 1.06161 1.38424 0.85307 0.79651 0.78200 0.76868 1.18595 1.19139 1.18809 1.23133 0.92799 0.97068 1.01193 0.87888 0.91558 0.91406 0.90934 0.91191 0.85764 0.86709 0.90245 0.88633 0.85158 0.85842 0.87095 0.87342 0.90398 0.89876 0.86156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 10.29 71.98 0.74 -1.16 16 2 C 0.05 0.93 6.19 71.98 0.45 1.38 16 3 O -0.36 -9.04 10.22 -51.45 -0.53 -9.57 16 4 C 0.48 13.09 7.48 71.24 0.53 13.62 16 5 O -0.53 -16.14 15.66 21.95 0.34 -15.80 16 6 C -0.10 -2.85 4.19 -11.01 -0.05 -2.90 16 7 C -0.13 -3.53 7.47 31.18 0.23 -3.30 16 8 C 0.05 1.58 3.72 31.18 0.12 1.70 16 9 O -0.30 -13.36 9.38 -89.57 -0.84 -14.20 16 10 C 0.01 0.25 6.71 23.08 0.15 0.40 16 11 C -0.18 -7.60 9.01 22.34 0.20 -7.40 16 12 C -0.20 -8.59 10.04 22.43 0.23 -8.37 16 13 C -0.14 -6.37 9.97 22.00 0.22 -6.16 16 14 C -0.16 -8.75 8.62 22.47 0.19 -8.56 16 15 C 0.06 3.19 5.58 -21.20 -0.12 3.07 16 16 C -0.48 -26.80 8.72 23.40 0.20 -26.60 16 17 H 0.07 3.86 7.66 -2.91 -0.02 3.84 16 18 C 0.03 1.69 5.22 85.25 0.45 2.14 16 19 N -0.83 -44.47 10.82 21.83 0.24 -44.24 16 20 Si 0.98 39.61 29.58 68.60 2.03 41.64 16 21 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 22 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 23 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 24 C -0.10 -2.90 7.23 31.12 0.23 -2.67 16 25 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.07 1.28 8.13 -2.39 -0.02 1.26 16 29 H 0.07 1.27 8.13 -2.39 -0.02 1.25 16 30 H 0.12 3.60 8.14 -2.39 -0.02 3.58 16 31 H 0.11 2.55 8.09 -2.39 -0.02 2.53 16 32 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.10 2.84 6.02 -2.39 -0.01 2.83 16 34 H 0.13 4.55 5.95 -2.91 -0.02 4.53 16 35 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 36 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 37 H 0.11 6.03 6.13 -2.91 -0.02 6.01 16 38 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 39 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.12 2.96 7.45 -2.39 -0.02 2.95 16 Total: -1.00 -64.01 338.25 6.06 -57.96 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 1.04 Total: 29.01 kcal Atomic # 6 Polarization: -48.57 SS G_CDS: 3.77 Total: -44.80 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 0.24 Total: -44.24 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -1.02 Total: -39.57 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal Total: -64.01 6.06 -57.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230275911.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.041 kcal (2) G-P(sol) polarization free energy of solvation -64.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds