Wall clock time and date at job start Tue Mar 31 2020 06:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 117.00138 * 2 1 4 4 O 1.20832 * 119.99154 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00226 * 180.02562 * 3 2 1 6 6 H 1.08996 * 110.67333 * 61.78446 * 5 3 2 7 7 C 1.54893 * 110.75815 * 298.54483 * 5 3 2 8 8 C 1.54261 * 104.19728 * 203.74091 * 7 5 3 9 9 C 1.53879 * 106.59844 * 23.61541 * 8 7 5 10 10 H 1.09003 * 110.03203 * 240.66474 * 9 8 7 11 11 O 1.42901 * 110.03311 * 119.28160 * 9 8 7 12 12 C 1.35632 * 116.99920 * 85.33206 * 11 9 8 13 13 C 1.38445 * 120.26919 * 354.93720 * 12 11 9 14 14 C 1.38306 * 120.05209 * 180.02562 * 13 12 11 15 15 C 1.38812 * 120.59598 * 0.02562 * 14 13 12 16 16 C 1.36498 * 120.53588 * 359.97438 * 15 14 13 17 17 C 1.40724 * 119.92818 * 0.02562 * 16 15 14 18 18 C 1.41148 * 120.29014 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00230 * 204.98310 * 18 17 16 20 20 C 1.39940 * 120.00102 * 24.98246 * 18 17 16 21 21 N 1.30871 * 119.99398 * 16.26164 * 20 18 17 22 22 Si 1.86797 * 120.00137 * 196.25835 * 20 18 17 23 23 H 1.48499 * 109.46577 * 94.95402 * 22 20 18 24 24 H 1.48504 * 109.47237 * 214.95006 * 22 20 18 25 25 H 1.48494 * 109.47327 * 334.95497 * 22 20 18 26 26 C 1.54262 * 106.63907 * 359.97030 * 9 8 7 27 27 H 1.08999 * 109.46986 * 60.00169 * 1 2 3 28 28 H 1.09001 * 109.46460 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46857 * 299.99600 * 1 2 3 30 30 H 1.08998 * 110.48057 * 85.06701 * 7 5 3 31 31 H 1.08998 * 110.59566 * 322.47895 * 7 5 3 32 32 H 1.08998 * 110.03876 * 264.32650 * 8 7 5 33 33 H 1.09005 * 110.07289 * 142.91482 * 8 7 5 34 34 H 1.08001 * 119.97523 * 0.02562 * 13 12 11 35 35 H 1.08011 * 119.70440 * 179.97438 * 14 13 12 36 36 H 1.07999 * 119.73705 * 180.27355 * 15 14 13 37 37 H 1.07999 * 120.03664 * 179.97438 * 16 15 14 38 38 H 0.96996 * 119.99585 * 179.97438 * 21 20 18 39 39 H 1.09007 * 110.48993 * 95.09622 * 26 9 8 40 40 H 1.09007 * 110.48843 * 217.73430 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9755 0.8137 -0.8994 7 6 4.1513 0.6122 1.2714 8 6 5.5326 1.2771 1.4432 9 6 5.4612 2.6326 0.7184 10 1 6.2002 2.6673 -0.0821 11 8 5.6932 3.6958 1.6446 12 6 6.9851 4.0289 1.8887 13 6 8.0139 3.2852 1.3363 14 6 9.3296 3.6285 1.5887 15 6 9.6337 4.7169 2.3949 16 6 8.6385 5.4668 2.9518 17 6 7.2919 5.1374 2.7099 18 6 6.2567 5.9081 3.2815 19 1 5.2847 5.4677 3.4484 20 6 6.4897 7.2427 3.6320 21 7 7.5332 7.8718 3.1547 22 14 5.3111 8.1260 4.7810 23 1 5.8202 8.0407 6.1733 24 1 5.2039 9.5518 4.3796 25 1 3.9725 7.4879 4.7034 26 6 4.0395 2.7447 0.1303 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.2607 -0.4624 1.1256 31 1 3.5192 0.8167 2.1355 32 1 6.3057 0.6537 0.9940 33 1 5.7450 1.4303 2.5013 34 1 7.7888 2.4361 0.7079 35 1 10.1279 3.0441 1.1552 36 1 10.6660 4.9752 2.5791 37 1 8.8842 6.3117 3.5782 38 1 7.6946 8.7970 3.3974 39 1 3.3883 3.2959 0.8088 40 1 4.0679 3.2258 -0.8474 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230276379.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:39 Heat of formation + Delta-G solvation = -113.415290 kcal Electronic energy + Delta-G solvation = -22867.902469 eV Core-core repulsion = 19419.421269 eV Total energy + Delta-G solvation = -3448.481200 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.72828 -39.15018 -37.34437 -36.45950 -35.23602 -33.55727 -29.97719 -29.25145 -28.93208 -28.11319 -27.16915 -25.06718 -22.83923 -21.42480 -20.80785 -20.05681 -19.50855 -17.81163 -17.43073 -16.92841 -16.58253 -16.34858 -15.49673 -15.22065 -14.54191 -14.14497 -13.85659 -13.63888 -13.36359 -13.14090 -12.99819 -12.62084 -12.46210 -12.17300 -11.80749 -11.63836 -11.51218 -11.23026 -11.19016 -11.05025 -10.96161 -10.83723 -10.71259 -10.47738 -10.38743 -10.24293 -9.80674 -9.66844 -9.34060 -9.12994 -7.43658 -6.97103 -6.64501 -4.19869 2.11611 2.56188 2.79196 3.02873 3.13325 3.18978 3.24958 4.01375 4.20894 4.38410 4.54124 4.69330 4.86960 4.90745 4.98274 5.03039 5.31292 5.35183 5.44594 5.48962 5.54824 5.68105 5.76650 5.88850 6.08084 6.12402 6.19656 6.23827 6.27571 6.38796 6.43095 6.55175 7.00287 7.16080 7.35448 7.42397 7.65155 7.78234 7.82534 8.11219 8.26931 8.47539 8.76653 8.91238 9.13537 10.27049 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016321 B = 0.004360 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.151377 B = 6420.187064 C = 7827.383945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.360 6.360 3 C 0.469 3.531 4 O -0.501 6.501 5 C -0.087 4.087 6 H 0.116 0.884 7 C -0.105 4.105 8 C -0.147 4.147 9 C 0.085 3.915 10 H 0.070 0.930 11 O -0.298 6.298 12 C 0.011 3.989 13 C -0.177 4.177 14 C -0.216 4.216 15 C -0.127 4.127 16 C -0.147 4.147 17 C 0.098 3.902 18 C -0.445 4.445 19 H 0.082 0.918 20 C 0.073 3.927 21 N -0.799 5.799 22 Si 0.908 3.092 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.261 1.261 26 C -0.102 4.102 27 H 0.061 0.939 28 H 0.099 0.901 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.124 0.876 38 H 0.279 0.721 39 H 0.094 0.906 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.864 -13.013 -4.927 15.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.312 3.688 4 O -0.388 6.388 5 C -0.106 4.106 6 H 0.134 0.866 7 C -0.143 4.143 8 C -0.185 4.185 9 C 0.027 3.973 10 H 0.088 0.912 11 O -0.213 6.213 12 C -0.033 4.033 13 C -0.196 4.196 14 C -0.235 4.235 15 C -0.146 4.146 16 C -0.167 4.167 17 C 0.095 3.905 18 C -0.475 4.475 19 H 0.100 0.900 20 C -0.144 4.144 21 N -0.426 5.426 22 Si 0.733 3.267 23 H -0.195 1.195 24 H -0.204 1.204 25 H -0.185 1.185 26 C -0.139 4.139 27 H 0.080 0.920 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.142 0.858 38 H 0.090 0.910 39 H 0.113 0.887 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.170 -12.380 -4.842 15.603 hybrid contribution -0.489 0.365 0.214 0.647 sum -8.659 -12.015 -4.628 15.516 Atomic orbital electron populations 1.23254 0.76615 1.03510 1.02588 1.86516 1.23218 1.33664 1.84244 1.23708 0.91888 0.81208 0.72035 1.90691 1.67055 1.36347 1.44710 1.22029 0.86629 0.99730 1.02221 0.86614 1.22274 0.96805 0.99735 0.95477 1.22760 0.96224 0.96429 1.03052 1.22696 0.96060 0.86784 0.91724 0.91188 1.86040 1.24821 1.50710 1.59689 1.19169 0.81274 1.00169 1.02704 1.20623 0.93481 1.00905 1.04556 1.20128 0.94422 1.01498 1.07499 1.20384 0.97526 0.96612 1.00052 1.20912 0.91311 1.01342 1.03099 1.17068 0.93353 0.89483 0.90591 1.19452 0.98617 0.94927 1.34484 0.90008 1.25888 0.95784 0.97827 0.94862 1.69839 1.26263 1.11411 1.35053 0.86293 0.81361 0.78433 0.80637 1.19459 1.20374 1.18534 1.22309 0.95927 0.93168 1.02505 0.91987 0.88213 0.91870 0.90380 0.90898 0.91046 0.89773 0.88652 0.89494 0.89453 0.85793 0.91041 0.88699 0.90187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.35 16 2 O -0.36 -4.04 10.55 -39.26 -0.41 -4.45 16 3 C 0.47 6.17 7.26 36.00 0.26 6.43 16 4 O -0.50 -8.14 15.54 -18.76 -0.29 -8.43 16 5 C -0.09 -1.04 3.40 -89.74 -0.31 -1.34 16 6 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 7 C -0.11 -1.23 6.25 -25.07 -0.16 -1.38 16 8 C -0.15 -2.07 5.85 -25.61 -0.15 -2.22 16 9 C 0.09 1.44 2.81 -25.61 -0.07 1.37 16 10 H 0.07 1.15 6.40 -51.93 -0.33 0.82 16 11 O -0.30 -6.74 9.00 -18.60 -0.17 -6.91 16 12 C 0.01 0.27 6.65 -38.33 -0.25 0.01 16 13 C -0.18 -3.93 8.75 -39.48 -0.35 -4.28 16 14 C -0.22 -4.84 10.04 -39.34 -0.39 -5.24 16 15 C -0.13 -3.02 9.97 -40.00 -0.40 -3.42 16 16 C -0.15 -3.86 8.64 -39.27 -0.34 -4.20 16 17 C 0.10 2.66 5.58 -106.68 -0.60 2.06 16 18 C -0.45 -12.20 8.72 -37.84 -0.33 -12.53 16 19 H 0.08 2.24 7.65 -52.49 -0.40 1.84 16 20 C 0.07 1.88 5.17 -17.32 -0.09 1.79 16 21 N -0.80 -21.04 10.90 55.55 0.61 -20.44 16 22 Si 0.91 19.40 29.59 -169.99 -5.03 14.37 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 24 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 26 C -0.10 -1.53 5.60 -25.03 -0.14 -1.67 16 27 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 28 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.90 8.04 -51.93 -0.42 0.48 16 32 H 0.07 0.88 8.05 -51.93 -0.42 0.46 16 33 H 0.08 1.35 7.95 -51.93 -0.41 0.94 16 34 H 0.10 1.82 5.68 -52.49 -0.30 1.52 16 35 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 36 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.12 3.34 6.13 -52.49 -0.32 3.02 16 38 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 39 H 0.09 1.66 7.47 -51.93 -0.39 1.27 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 332.77 15.07 5.01 5.01 Total: -1.00 -30.50 332.77 -8.03 -38.54 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -5.51 Total: 5.57 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: -2.24 Total: -23.27 kcal Atomic # 7 Polarization: -21.04 SS G_CDS: 0.61 Total: -20.44 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.87 Total: -19.79 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.50 -8.03 -38.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276379.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.880 kcal (2) G-P(sol) polarization free energy of solvation -30.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds