Wall clock time and date at job start Tue Mar 31 2020 06:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 117.00138 * 2 1 4 4 O 1.20832 * 119.99154 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00226 * 180.02562 * 3 2 1 6 6 H 1.08996 * 110.67333 * 61.78446 * 5 3 2 7 7 C 1.54893 * 110.75815 * 298.54483 * 5 3 2 8 8 C 1.54261 * 104.19728 * 203.74091 * 7 5 3 9 9 C 1.53879 * 106.59844 * 23.61541 * 8 7 5 10 10 H 1.09003 * 110.03203 * 240.66474 * 9 8 7 11 11 O 1.42901 * 110.03311 * 119.28160 * 9 8 7 12 12 C 1.35632 * 116.99920 * 85.33206 * 11 9 8 13 13 C 1.38445 * 120.26919 * 354.93720 * 12 11 9 14 14 C 1.38306 * 120.05209 * 180.02562 * 13 12 11 15 15 C 1.38812 * 120.59598 * 0.02562 * 14 13 12 16 16 C 1.36498 * 120.53588 * 359.97438 * 15 14 13 17 17 C 1.40724 * 119.92818 * 0.02562 * 16 15 14 18 18 C 1.41148 * 120.29014 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00230 * 204.98310 * 18 17 16 20 20 C 1.39940 * 120.00102 * 24.98246 * 18 17 16 21 21 N 1.30871 * 119.99398 * 16.26164 * 20 18 17 22 22 Si 1.86797 * 120.00137 * 196.25835 * 20 18 17 23 23 H 1.48499 * 109.46577 * 94.95402 * 22 20 18 24 24 H 1.48504 * 109.47237 * 214.95006 * 22 20 18 25 25 H 1.48494 * 109.47327 * 334.95497 * 22 20 18 26 26 C 1.54262 * 106.63907 * 359.97030 * 9 8 7 27 27 H 1.08999 * 109.46986 * 60.00169 * 1 2 3 28 28 H 1.09001 * 109.46460 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46857 * 299.99600 * 1 2 3 30 30 H 1.08998 * 110.48057 * 85.06701 * 7 5 3 31 31 H 1.08998 * 110.59566 * 322.47895 * 7 5 3 32 32 H 1.08998 * 110.03876 * 264.32650 * 8 7 5 33 33 H 1.09005 * 110.07289 * 142.91482 * 8 7 5 34 34 H 1.08001 * 119.97523 * 0.02562 * 13 12 11 35 35 H 1.08011 * 119.70440 * 179.97438 * 14 13 12 36 36 H 1.07999 * 119.73705 * 180.27355 * 15 14 13 37 37 H 1.07999 * 120.03664 * 179.97438 * 16 15 14 38 38 H 0.96996 * 119.99585 * 179.97438 * 21 20 18 39 39 H 1.09007 * 110.48993 * 95.09622 * 26 9 8 40 40 H 1.09007 * 110.48843 * 217.73430 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9755 0.8137 -0.8994 7 6 4.1513 0.6122 1.2714 8 6 5.5326 1.2771 1.4432 9 6 5.4612 2.6326 0.7184 10 1 6.2002 2.6673 -0.0821 11 8 5.6932 3.6958 1.6446 12 6 6.9851 4.0289 1.8887 13 6 8.0139 3.2852 1.3363 14 6 9.3296 3.6285 1.5887 15 6 9.6337 4.7169 2.3949 16 6 8.6385 5.4668 2.9518 17 6 7.2919 5.1374 2.7099 18 6 6.2567 5.9081 3.2815 19 1 5.2847 5.4677 3.4484 20 6 6.4897 7.2427 3.6320 21 7 7.5332 7.8718 3.1547 22 14 5.3111 8.1260 4.7810 23 1 5.8202 8.0407 6.1733 24 1 5.2039 9.5518 4.3796 25 1 3.9725 7.4879 4.7034 26 6 4.0395 2.7447 0.1303 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.2607 -0.4624 1.1256 31 1 3.5192 0.8167 2.1355 32 1 6.3057 0.6537 0.9940 33 1 5.7450 1.4303 2.5013 34 1 7.7888 2.4361 0.7079 35 1 10.1279 3.0441 1.1552 36 1 10.6660 4.9752 2.5791 37 1 8.8842 6.3117 3.5782 38 1 7.6946 8.7970 3.3974 39 1 3.3883 3.2959 0.8088 40 1 4.0679 3.2258 -0.8474 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230276379.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:38 Heat of formation + Delta-G solvation = -129.694631 kcal Electronic energy + Delta-G solvation = -22868.608394 eV Core-core repulsion = 19419.421269 eV Total energy + Delta-G solvation = -3449.187125 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.77095 -40.69515 -38.79876 -37.59180 -36.71920 -35.47012 -31.71987 -30.61176 -30.40515 -29.42457 -28.10195 -26.99786 -24.01131 -22.95663 -22.56205 -21.19801 -20.89028 -19.34112 -18.91030 -18.22768 -17.70883 -17.55748 -16.98298 -16.60350 -16.11006 -15.92456 -15.00195 -14.96409 -14.81910 -14.58848 -14.37310 -14.11028 -13.79098 -13.35314 -13.24001 -13.06152 -12.98548 -12.80085 -12.68422 -12.50251 -12.22112 -12.19352 -11.96166 -11.80987 -11.65841 -11.56323 -11.43404 -11.29922 -11.08567 -11.03208 -9.35228 -8.83914 -8.54027 -6.20901 0.95608 1.10081 1.14178 1.35742 1.48869 1.50012 1.66375 2.22466 2.73009 2.80228 3.29691 3.46159 3.74109 3.88932 4.03811 4.18283 4.30414 4.31132 4.33644 4.37935 4.41683 4.45912 4.56678 4.58739 4.69407 4.71873 4.84707 5.02627 5.05315 5.16428 5.20177 5.22235 5.26542 5.33722 5.47783 5.54657 5.90749 5.93770 6.20003 6.34480 6.57395 6.67225 6.84424 6.95077 7.30746 8.38097 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016321 B = 0.004360 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.151377 B = 6420.187064 C = 7827.383945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.355 6.355 3 C 0.472 3.528 4 O -0.542 6.542 5 C -0.076 4.076 6 H 0.155 0.845 7 C -0.097 4.097 8 C -0.141 4.141 9 C 0.073 3.927 10 H 0.080 0.920 11 O -0.327 6.327 12 C 0.007 3.993 13 C -0.177 4.177 14 C -0.204 4.204 15 C -0.138 4.138 16 C -0.168 4.168 17 C 0.055 3.945 18 C -0.485 4.485 19 H 0.063 0.937 20 C 0.034 3.966 21 N -0.831 5.831 22 Si 0.976 3.024 23 H -0.259 1.259 24 H -0.266 1.266 25 H -0.268 1.268 26 C -0.102 4.102 27 H 0.062 0.938 28 H 0.136 0.864 29 H 0.056 0.944 30 H 0.114 0.886 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.058 0.942 34 H 0.133 0.867 35 H 0.126 0.874 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.286 0.714 39 H 0.060 0.940 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.650 -15.636 -6.124 18.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.271 6.271 3 C 0.316 3.684 4 O -0.431 6.431 5 C -0.095 4.095 6 H 0.172 0.828 7 C -0.134 4.134 8 C -0.178 4.178 9 C 0.016 3.984 10 H 0.098 0.902 11 O -0.242 6.242 12 C -0.038 4.038 13 C -0.195 4.195 14 C -0.223 4.223 15 C -0.157 4.157 16 C -0.188 4.188 17 C 0.053 3.947 18 C -0.515 4.515 19 H 0.082 0.918 20 C -0.179 4.179 21 N -0.458 5.458 22 Si 0.798 3.202 23 H -0.183 1.183 24 H -0.190 1.190 25 H -0.192 1.192 26 C -0.140 4.140 27 H 0.080 0.920 28 H 0.154 0.846 29 H 0.074 0.926 30 H 0.133 0.867 31 H 0.077 0.923 32 H 0.119 0.881 33 H 0.077 0.923 34 H 0.151 0.849 35 H 0.144 0.856 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.948 -15.040 -6.048 18.054 hybrid contribution -0.556 1.017 0.471 1.251 sum -8.504 -14.023 -5.577 17.323 Atomic orbital electron populations 1.23563 0.74989 1.05813 1.02322 1.86501 1.24780 1.32261 1.83571 1.23909 0.92326 0.81197 0.70954 1.90687 1.67965 1.37760 1.46718 1.22026 0.86058 0.97334 1.04038 0.82770 1.22253 0.94858 1.01549 0.94739 1.22702 0.98672 0.95214 1.01241 1.23131 0.97123 0.86752 0.91389 0.90215 1.86008 1.24089 1.52906 1.61219 1.19343 0.82769 0.99656 1.02011 1.21005 0.92846 1.01437 1.04247 1.20629 0.95572 1.00514 1.05586 1.20686 0.98133 0.96824 1.00030 1.20885 0.91932 1.01825 1.04146 1.17458 0.93859 0.91223 0.92156 1.19511 0.98304 0.96321 1.37343 0.91841 1.26629 0.97540 0.97931 0.95825 1.69879 1.27799 1.12015 1.36118 0.85279 0.78648 0.77488 0.78802 1.18333 1.19001 1.19176 1.22262 0.94433 0.95520 1.01758 0.91954 0.84610 0.92563 0.86733 0.92330 0.88113 0.92311 0.84930 0.85631 0.87070 0.87609 0.90329 0.92147 0.89540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.59 16 2 O -0.36 -7.11 10.55 -51.44 -0.54 -7.65 16 3 C 0.47 11.76 7.26 71.23 0.52 12.27 16 4 O -0.54 -17.69 15.54 21.95 0.34 -17.35 16 5 C -0.08 -1.63 3.40 -10.22 -0.03 -1.66 16 6 H 0.15 2.18 8.14 -2.39 -0.02 2.16 16 7 C -0.10 -1.99 6.25 31.67 0.20 -1.79 16 8 C -0.14 -3.65 5.85 31.32 0.18 -3.47 16 9 C 0.07 2.39 2.81 31.32 0.09 2.47 16 10 H 0.08 2.44 6.40 -2.39 -0.02 2.42 16 11 O -0.33 -15.25 9.00 -89.45 -0.81 -16.05 16 12 C 0.01 0.34 6.65 23.08 0.15 0.49 16 13 C -0.18 -7.53 8.75 22.34 0.20 -7.33 16 14 C -0.20 -8.59 10.04 22.42 0.23 -8.37 16 15 C -0.14 -6.46 9.97 22.00 0.22 -6.24 16 16 C -0.17 -9.12 8.64 22.47 0.19 -8.93 16 17 C 0.06 3.14 5.58 -21.20 -0.12 3.02 16 18 C -0.48 -28.18 8.72 23.40 0.20 -27.98 16 19 H 0.06 3.76 7.65 -2.91 -0.02 3.73 16 20 C 0.03 1.83 5.17 85.25 0.44 2.27 16 21 N -0.83 -45.52 10.90 21.83 0.24 -45.28 16 22 Si 0.98 41.37 29.59 68.60 2.03 43.40 16 23 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 24 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 26 C -0.10 -3.04 5.60 31.69 0.18 -2.87 16 27 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 28 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 30 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.06 1.38 8.04 -2.39 -0.02 1.36 16 32 H 0.10 2.03 8.05 -2.39 -0.02 2.01 16 33 H 0.06 1.85 7.95 -2.38 -0.02 1.83 16 34 H 0.13 4.56 5.68 -2.91 -0.02 4.54 16 35 H 0.13 4.33 8.06 -2.90 -0.02 4.31 16 36 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 37 H 0.11 6.00 6.13 -2.91 -0.02 5.98 16 38 H 0.29 14.16 8.30 -92.71 -0.77 13.39 16 39 H 0.06 2.22 7.47 -2.38 -0.02 2.21 16 40 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 Total: -1.00 -70.68 332.77 6.14 -64.54 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 1.04 Total: 24.92 kcal Atomic # 6 Polarization: -50.37 SS G_CDS: 3.84 Total: -46.53 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.24 Total: -45.28 kcal Atomic # 8 Polarization: -40.04 SS G_CDS: -1.01 Total: -41.05 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -70.68 6.14 -64.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276379.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.158 kcal (2) G-P(sol) polarization free energy of solvation -70.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds