Wall clock time and date at job start Tue Mar 31 2020 06:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45195 * 109.47171 * 2 1 4 4 C 1.34225 * 117.00488 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99602 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00519 * 180.02562 * 4 3 2 7 7 H 1.08998 * 112.90446 * 311.25286 * 6 4 3 8 8 C 1.53781 * 113.61365 * 82.50508 * 6 4 3 9 9 C 1.53775 * 87.08163 * 139.98300 * 8 6 4 10 10 H 1.09005 * 113.61530 * 89.11165 * 9 8 6 11 11 O 1.42905 * 113.61432 * 220.01772 * 9 8 6 12 12 C 1.35639 * 116.99646 * 254.77267 * 11 9 8 13 13 C 1.38445 * 120.27182 * 6.00985 * 12 11 9 14 14 C 1.38305 * 120.05289 * 180.02562 * 13 12 11 15 15 C 1.38817 * 120.59396 * 0.02562 * 14 13 12 16 16 C 1.36492 * 120.53743 * 0.02562 * 15 14 13 17 17 C 1.40733 * 119.92664 * 359.68413 * 16 15 14 18 18 C 1.41156 * 120.28670 * 180.31999 * 17 16 15 19 19 H 1.07995 * 119.99522 * 206.48545 * 18 17 16 20 20 C 1.39927 * 120.00007 * 26.48663 * 18 17 16 21 21 N 1.30867 * 120.00436 * 13.20057 * 20 18 17 22 22 Si 1.86805 * 119.99672 * 193.20048 * 20 18 17 23 23 H 1.48499 * 109.46966 * 60.00254 * 22 20 18 24 24 H 1.48505 * 109.46897 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47149 * 299.99954 * 22 20 18 26 26 C 1.53778 * 87.08219 * 334.56540 * 9 8 6 27 27 H 1.09000 * 109.46962 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47122 * 299.99410 * 1 2 3 29 29 H 1.09000 * 109.47211 * 59.99847 * 1 2 3 30 30 H 1.09010 * 109.47065 * 240.00532 * 2 1 3 31 31 H 1.08997 * 109.47393 * 120.00649 * 2 1 3 32 32 H 1.08999 * 113.60970 * 254.53123 * 8 6 4 33 33 H 1.08996 * 113.61413 * 25.43120 * 8 6 4 34 34 H 1.08003 * 119.97379 * 0.02562 * 13 12 11 35 35 H 1.08001 * 119.70210 * 179.97438 * 14 13 12 36 36 H 1.07998 * 119.72964 * 180.02562 * 15 14 13 37 37 H 1.08003 * 120.03622 * 179.97438 * 16 15 14 38 38 H 0.97000 * 120.00029 * 180.02562 * 21 20 18 39 39 H 1.08999 * 113.61504 * 270.88255 * 26 9 8 40 40 H 1.09006 * 113.61567 * 139.98071 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0012 7 1 3.4713 3.5827 -0.7537 8 6 3.9858 3.5765 1.3984 9 6 5.3560 4.1422 0.9896 10 1 5.2991 5.1169 0.5050 11 8 6.3291 4.0968 2.0352 12 6 6.6307 5.2693 2.6469 13 6 5.9211 6.4183 2.3421 14 6 6.2328 7.6114 2.9681 15 6 7.2559 7.6718 3.9045 16 6 7.9718 6.5540 4.2225 17 6 7.6694 5.3269 3.6035 18 6 8.4004 4.1648 3.9316 19 1 8.4913 3.3634 3.2135 20 6 9.0072 4.0513 5.1874 21 7 8.6922 4.8866 6.1443 22 14 10.2668 2.7072 5.4979 23 1 11.4077 2.8723 4.5618 24 1 10.7571 2.8019 6.8965 25 1 9.6376 1.3797 5.2821 26 6 5.4582 2.9681 0.0017 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.2286 4.3430 1.5636 33 1 4.0376 2.8497 2.2089 34 1 5.1234 6.3828 1.6148 35 1 5.6758 8.5044 2.7257 36 1 7.4872 8.6108 4.3852 37 1 8.7663 6.6103 4.9519 38 1 9.1131 4.8080 7.0147 39 1 5.9126 2.0750 0.4305 40 1 5.8897 3.2435 -0.9606 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230280900.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:28 Heat of formation + Delta-G solvation = -102.322081 kcal Electronic energy + Delta-G solvation = -22497.725148 eV Core-core repulsion = 19049.724986 eV Total energy + Delta-G solvation = -3448.000163 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.96330 -40.67816 -39.09105 -37.70514 -36.72034 -35.45810 -32.66096 -31.58559 -30.41878 -27.93482 -26.99426 -26.82107 -24.37523 -23.29175 -22.57350 -21.78460 -20.51639 -19.40126 -19.07084 -18.33800 -17.65188 -17.46616 -16.85043 -16.49897 -15.97006 -15.84460 -15.59076 -14.98747 -14.66345 -14.57535 -14.37238 -13.83581 -13.68288 -13.55772 -13.36996 -13.03025 -12.91352 -12.80693 -12.74864 -12.54984 -12.43345 -12.22808 -12.18960 -11.97489 -11.56861 -11.55138 -11.39984 -11.20915 -11.05314 -11.04576 -9.33726 -8.83286 -8.51442 -6.22106 0.96925 1.05144 1.13360 1.36136 1.47291 1.51679 1.58901 2.22870 2.77888 2.81554 3.23911 3.39299 3.64979 3.76537 3.81362 3.93760 3.97883 4.06483 4.26958 4.32256 4.45841 4.58280 4.62807 4.67559 4.72378 4.80576 4.89612 4.90728 4.92522 5.09522 5.12635 5.20262 5.26096 5.41291 5.47914 5.53673 5.90852 5.93662 6.19886 6.34387 6.56668 6.65941 6.84642 6.95633 7.29311 8.39965 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016399 B = 0.003898 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.998765 B = 7180.867958 C = 8317.029580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.049 3.951 3 O -0.356 6.356 4 C 0.476 3.524 5 O -0.540 6.540 6 C -0.091 4.091 7 H 0.170 0.830 8 C -0.134 4.134 9 C 0.047 3.953 10 H 0.120 0.880 11 O -0.318 6.318 12 C 0.004 3.996 13 C -0.179 4.179 14 C -0.200 4.200 15 C -0.140 4.140 16 C -0.164 4.164 17 C 0.053 3.947 18 C -0.485 4.485 19 H 0.064 0.936 20 C 0.032 3.968 21 N -0.834 5.834 22 Si 0.977 3.023 23 H -0.260 1.260 24 H -0.264 1.264 25 H -0.268 1.268 26 C -0.114 4.114 27 H 0.099 0.901 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.108 0.892 33 H 0.069 0.931 34 H 0.137 0.863 35 H 0.127 0.873 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.286 0.714 39 H 0.075 0.925 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.369 -3.893 -11.562 18.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 O -0.273 6.273 4 C 0.320 3.680 5 O -0.430 6.430 6 C -0.109 4.109 7 H 0.187 0.813 8 C -0.172 4.172 9 C -0.009 4.009 10 H 0.137 0.863 11 O -0.233 6.233 12 C -0.040 4.040 13 C -0.197 4.197 14 C -0.220 4.220 15 C -0.158 4.158 16 C -0.184 4.184 17 C 0.051 3.949 18 C -0.515 4.515 19 H 0.083 0.917 20 C -0.181 4.181 21 N -0.462 5.462 22 Si 0.799 3.201 23 H -0.185 1.185 24 H -0.188 1.188 25 H -0.193 1.193 26 C -0.151 4.151 27 H 0.118 0.882 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.126 0.874 33 H 0.087 0.913 34 H 0.154 0.846 35 H 0.145 0.855 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.069 -4.355 -11.267 17.796 hybrid contribution 0.690 -0.786 0.543 1.178 sum -12.379 -5.141 -10.724 17.166 Atomic orbital electron populations 1.21818 0.90098 1.04400 1.03852 1.23321 0.97346 0.79351 1.02394 1.86516 1.23704 1.33605 1.83443 1.23816 0.80669 0.92608 0.70910 1.90660 1.61330 1.44202 1.46783 1.22313 0.96324 0.90536 1.01747 0.81261 1.23428 0.98352 1.00727 0.94682 1.24078 0.87996 1.00178 0.88670 0.86288 1.86045 1.58561 1.29956 1.48745 1.19407 0.98186 0.85366 1.01037 1.21008 1.02212 0.92571 1.03932 1.20650 1.01984 0.97500 1.01822 1.20707 0.98007 0.97590 0.99514 1.20931 1.02299 0.91640 1.03501 1.17482 0.90941 0.94215 0.92286 1.19490 1.29464 1.02730 0.99854 0.91740 1.26630 0.97469 0.99162 0.94836 1.69857 1.37021 1.36002 1.03332 0.85328 0.78369 0.78109 0.78317 1.18454 1.18781 1.19271 1.23157 0.93473 0.98265 1.00203 0.88226 0.91471 0.90755 0.91007 0.92098 0.87391 0.91262 0.84567 0.85478 0.87026 0.87470 0.90393 0.90622 0.87419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 10.29 71.98 0.74 -0.97 16 2 C 0.05 0.92 6.19 71.98 0.45 1.37 16 3 O -0.36 -8.20 10.22 -51.37 -0.52 -8.72 16 4 C 0.48 12.72 7.48 71.24 0.53 13.26 16 5 O -0.54 -18.19 15.65 21.97 0.34 -17.85 16 6 C -0.09 -2.03 4.26 -11.01 -0.05 -2.08 16 7 H 0.17 2.36 8.14 -2.39 -0.02 2.34 16 8 C -0.13 -3.65 7.46 31.12 0.23 -3.42 16 9 C 0.05 1.51 3.65 31.12 0.11 1.62 16 10 H 0.12 3.22 6.02 -2.38 -0.01 3.20 16 11 O -0.32 -14.65 9.46 -89.53 -0.85 -15.50 16 12 C 0.00 0.22 6.71 23.08 0.15 0.38 16 13 C -0.18 -7.47 9.01 22.34 0.20 -7.27 16 14 C -0.20 -8.31 10.04 22.42 0.23 -8.09 16 15 C -0.14 -6.46 9.97 22.00 0.22 -6.24 16 16 C -0.16 -8.83 8.62 22.47 0.19 -8.64 16 17 C 0.05 2.99 5.58 -21.20 -0.12 2.87 16 18 C -0.49 -28.05 8.72 23.40 0.20 -27.84 16 19 H 0.06 3.76 7.65 -2.91 -0.02 3.74 16 20 C 0.03 1.70 5.22 85.25 0.45 2.14 16 21 N -0.83 -45.66 10.82 21.83 0.24 -45.42 16 22 Si 0.98 41.28 29.58 68.60 2.03 43.31 16 23 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 24 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 26 C -0.11 -3.16 7.24 31.12 0.23 -2.93 16 27 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.06 1.24 8.13 -2.39 -0.02 1.22 16 32 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.07 2.27 8.09 -2.39 -0.02 2.25 16 34 H 0.14 4.49 5.95 -2.91 -0.02 4.47 16 35 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 36 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 37 H 0.11 6.05 6.13 -2.91 -0.02 6.04 16 38 H 0.29 14.17 8.30 -92.71 -0.77 13.41 16 39 H 0.08 2.61 7.44 -2.39 -0.02 2.59 16 40 H 0.11 2.40 8.14 -2.38 -0.02 2.38 16 Total: -1.00 -69.91 338.30 6.05 -63.86 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: 1.04 Total: 26.16 kcal Atomic # 6 Polarization: -49.62 SS G_CDS: 3.77 Total: -45.85 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.24 Total: -45.42 kcal Atomic # 8 Polarization: -41.04 SS G_CDS: -1.03 Total: -42.07 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -69.91 6.05 -63.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230280900.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.462 kcal (2) G-P(sol) polarization free energy of solvation -69.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds