Wall clock time and date at job start Tue Mar 31 2020 06:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.47052 * 2 1 4 4 C 1.34232 * 116.99633 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00289 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99688 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.46848 * 305.00436 * 6 4 3 8 8 O 1.42902 * 109.46996 * 185.00682 * 6 4 3 9 9 C 1.35636 * 117.00147 * 141.65934 * 8 6 4 10 10 C 1.38451 * 120.26715 * 5.47224 * 9 8 6 11 11 C 1.38303 * 120.05478 * 180.02562 * 10 9 8 12 12 C 1.38817 * 120.58960 * 359.97438 * 11 10 9 13 13 C 1.36497 * 120.53973 * 0.03196 * 12 11 10 14 14 C 1.40727 * 119.92581 * 359.67269 * 13 12 11 15 15 C 1.41148 * 120.28733 * 180.32418 * 14 13 12 16 16 H 1.08009 * 120.00174 * 151.16572 * 15 14 13 17 17 C 1.39933 * 120.00308 * 331.16420 * 15 14 13 18 18 N 1.30863 * 119.99982 * 349.57784 * 17 15 14 19 19 Si 1.86798 * 120.00121 * 169.57723 * 17 15 14 20 20 H 1.48503 * 109.47337 * 90.00192 * 19 17 15 21 21 H 1.48500 * 109.47420 * 210.00133 * 19 17 15 22 22 H 1.48504 * 109.47052 * 330.00208 * 19 17 15 23 23 C 1.52995 * 109.47090 * 65.00207 * 6 4 3 24 24 C 1.52994 * 117.50353 * 248.62032 * 23 6 4 25 25 C 1.52996 * 117.49753 * 179.97438 * 23 6 4 26 26 H 1.08998 * 109.47328 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47187 * 299.99981 * 1 2 3 28 28 H 1.08996 * 109.47438 * 59.99790 * 1 2 3 29 29 H 1.08996 * 109.46916 * 239.99717 * 2 1 3 30 30 H 1.09002 * 109.46833 * 119.99897 * 2 1 3 31 31 H 1.08001 * 119.97008 * 0.02562 * 10 9 8 32 32 H 1.07994 * 119.70702 * 179.97438 * 11 10 9 33 33 H 1.08001 * 119.73208 * 179.97438 * 12 11 10 34 34 H 1.08001 * 120.03407 * 180.02562 * 13 12 11 35 35 H 0.97002 * 119.99857 * 179.97438 * 18 17 15 36 36 H 1.09001 * 115.54867 * 34.33426 * 23 6 4 37 37 H 1.09004 * 117.49372 * 0.02562 * 24 23 6 38 38 H 1.08998 * 117.50340 * 145.01992 * 24 23 6 39 39 H 1.09008 * 117.49846 * 214.98086 * 25 23 6 40 40 H 1.09002 * 117.50138 * 359.97438 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.5153 3.4979 -0.8423 8 8 5.3431 2.8645 -0.1169 9 6 5.9467 3.8037 -0.8871 10 6 5.2083 4.8429 -1.4274 11 6 5.8282 5.7979 -2.2125 12 6 7.1910 5.7273 -2.4669 13 6 7.9421 4.7133 -1.9465 14 6 7.3353 3.7330 -1.1395 15 6 8.1060 2.6849 -0.5919 16 1 7.8117 2.2292 0.3421 17 6 9.2512 2.2361 -1.2590 18 7 9.4975 2.6388 -2.4796 19 14 10.4286 1.0622 -0.4074 20 1 10.0198 -0.3379 -0.6864 21 1 11.8056 1.2865 -0.9160 22 1 10.3962 1.3047 1.0573 23 6 3.5518 3.6424 1.3067 24 6 2.5661 4.8097 1.2258 25 6 4.0478 5.0767 1.5000 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 4.1475 4.9077 -1.2355 32 1 5.2468 6.6058 -2.6315 33 1 7.6608 6.4804 -3.0822 34 1 9.0019 4.6665 -2.1493 35 1 10.2916 2.3279 -2.9419 36 1 3.5044 3.0034 2.1885 37 1 2.1801 5.0751 0.2416 38 1 1.8697 4.9387 2.0543 39 1 4.3259 5.3815 2.5090 40 1 4.6374 5.5180 0.6964 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230281532.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:51 Heat of formation + Delta-G solvation = -71.943358 kcal Electronic energy + Delta-G solvation = -23361.973033 eV Core-core repulsion = 19915.290191 eV Total energy + Delta-G solvation = -3446.682842 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.49831 -39.04645 -37.01231 -36.39810 -35.47098 -33.56823 -31.84442 -29.91670 -29.13542 -27.92147 -25.10349 -23.47815 -22.24364 -21.71294 -21.52330 -20.76085 -19.69815 -18.09062 -17.11616 -16.63966 -16.48079 -16.33771 -15.45900 -14.94852 -14.63582 -14.18020 -14.12622 -13.73188 -13.12315 -13.02151 -12.94073 -12.72578 -12.54955 -11.97233 -11.91588 -11.60834 -11.47915 -11.30510 -11.24561 -11.01317 -10.83555 -10.52972 -10.48556 -10.44208 -10.29124 -10.05622 -9.72904 -9.70951 -9.36361 -9.16690 -7.45718 -7.02078 -6.63481 -4.24118 2.42179 2.50036 2.77013 2.94737 3.13998 3.20055 3.24650 3.76235 4.03311 4.47619 4.66280 4.71968 4.84227 4.87893 4.94411 5.06475 5.12796 5.20088 5.29570 5.57774 5.62469 5.64582 5.67104 5.75330 5.83731 5.99745 6.06869 6.19714 6.26914 6.42332 6.43841 6.53339 6.88360 7.11838 7.27253 7.35627 7.67439 7.74729 8.00795 8.04080 8.21921 8.37852 8.72125 8.88557 9.04188 10.29166 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014087 B = 0.005528 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.219666 B = 5064.211789 C = 6234.940840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.060 3.940 3 O -0.356 6.356 4 C 0.463 3.537 5 O -0.479 6.479 6 C 0.125 3.875 7 H 0.106 0.894 8 O -0.270 6.270 9 C 0.008 3.992 10 C -0.182 4.182 11 C -0.210 4.210 12 C -0.127 4.127 13 C -0.137 4.137 14 C 0.102 3.898 15 C -0.441 4.441 16 H 0.082 0.918 17 C 0.071 3.929 18 N -0.805 5.805 19 Si 0.912 3.088 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.261 1.261 23 C -0.168 4.168 24 C -0.169 4.169 25 C -0.166 4.166 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.127 0.873 35 H 0.279 0.721 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.220 0.230 4.672 14.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.014 4.014 3 O -0.274 6.274 4 C 0.303 3.697 5 O -0.363 6.363 6 C 0.066 3.934 7 H 0.124 0.876 8 O -0.185 6.185 9 C -0.035 4.035 10 C -0.201 4.201 11 C -0.229 4.229 12 C -0.145 4.145 13 C -0.157 4.157 14 C 0.100 3.900 15 C -0.471 4.471 16 H 0.100 0.900 17 C -0.145 4.145 18 N -0.432 5.432 19 Si 0.737 3.263 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.185 1.185 23 C -0.187 4.187 24 C -0.206 4.206 25 C -0.202 4.202 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.145 0.855 35 H 0.090 0.910 36 H 0.126 0.874 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.726 -0.308 4.587 13.531 hybrid contribution 0.361 -0.719 0.123 0.814 sum -12.365 -1.027 4.710 13.272 Atomic orbital electron populations 1.21788 0.92699 1.02752 1.03474 1.23004 0.95166 0.80567 1.02674 1.86485 1.24270 1.32050 1.84578 1.23566 0.80554 0.92389 0.73166 1.90703 1.60167 1.42531 1.42948 1.20947 0.84711 0.89140 0.98608 0.87643 1.86120 1.14802 1.51404 1.66138 1.19243 0.92551 0.91241 1.00493 1.20586 0.97459 0.97607 1.04467 1.20120 0.95004 1.01186 1.06620 1.20424 0.94014 0.98820 1.01271 1.20968 1.00032 0.93196 1.01477 1.17041 0.87119 0.93299 0.92577 1.19447 1.05900 1.14608 1.07154 0.90013 1.25873 0.97772 0.96530 0.94278 1.69797 1.25042 1.38358 1.09994 0.86244 0.78870 0.80522 0.80697 1.19525 1.20261 1.18510 1.22377 1.06309 0.91950 0.98054 1.23001 0.93055 1.01353 1.03200 1.23186 0.96390 0.96553 1.04098 0.90401 0.91516 0.91478 0.91241 0.91308 0.88506 0.89203 0.89219 0.85491 0.91036 0.87367 0.88576 0.88524 0.88612 0.86741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.29 37.16 0.38 -0.88 16 2 C 0.06 0.72 6.19 37.16 0.23 0.95 16 3 O -0.36 -5.36 10.21 -39.26 -0.40 -5.76 16 4 C 0.46 8.61 7.27 36.01 0.26 8.87 16 5 O -0.48 -10.62 16.26 -25.46 -0.41 -11.04 16 6 C 0.13 2.33 2.54 -27.88 -0.07 2.26 16 7 H 0.11 1.85 5.24 -51.93 -0.27 1.58 16 8 O -0.27 -6.42 8.59 -38.51 -0.33 -6.75 16 9 C 0.01 0.21 6.31 -38.33 -0.24 -0.03 16 10 C -0.18 -3.95 6.86 -39.48 -0.27 -4.22 16 11 C -0.21 -4.53 10.04 -39.34 -0.39 -4.93 16 12 C -0.13 -2.92 9.97 -40.00 -0.40 -3.32 16 13 C -0.14 -3.55 8.60 -39.27 -0.34 -3.88 16 14 C 0.10 2.78 5.56 -106.68 -0.59 2.19 16 15 C -0.44 -12.27 8.69 -37.84 -0.33 -12.60 16 16 H 0.08 2.30 7.70 -52.48 -0.40 1.90 16 17 C 0.07 1.86 5.26 -17.33 -0.09 1.77 16 18 N -0.81 -21.34 10.83 55.55 0.60 -20.73 16 19 Si 0.91 19.86 29.57 -169.99 -5.03 14.83 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 22 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 23 C -0.17 -2.60 5.37 -90.63 -0.49 -3.09 16 24 C -0.17 -2.08 10.18 -26.71 -0.27 -2.35 16 25 C -0.17 -2.45 9.68 -26.71 -0.26 -2.70 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 30 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 31 H 0.10 1.80 5.28 -52.49 -0.28 1.52 16 32 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 33 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 34 H 0.13 3.38 6.21 -52.49 -0.33 3.05 16 35 H 0.28 6.74 8.30 -40.82 -0.34 6.41 16 36 H 0.11 1.61 8.11 -51.93 -0.42 1.19 16 37 H 0.10 1.12 8.05 -51.93 -0.42 0.70 16 38 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.10 1.27 8.14 -51.92 -0.42 0.85 16 40 H 0.11 1.95 5.24 -51.93 -0.27 1.67 16 LS Contribution 336.80 15.07 5.08 5.08 Total: -1.00 -30.54 336.80 -8.70 -39.24 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -5.33 Total: 7.11 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: -2.87 Total: -21.97 kcal Atomic # 7 Polarization: -21.34 SS G_CDS: 0.60 Total: -20.73 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -1.15 Total: -23.55 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.03 Total: 14.83 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.54 -8.70 -39.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230281532.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.708 kcal (2) G-P(sol) polarization free energy of solvation -30.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds